PI0006406 (gene) Melon (PI 482460) v1

Overview


Name	PI0006406
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr05: 15583253 .. 15584019 (+)
RNA-Seq Expression	PI0006406
Synteny	PI0006406

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTAATAGAGTTGGTATCCGCCAGCGACTAGAGGTCGGGCAACAGGACGTTTAGACTCGGTTACCATAGTCATTTGTAGAAAATGATGGCTGAGAGGATGTCAAGACATAATATATAGGCTTCGACCATTGATTGTCGGATAAAGACGCTTAAAAGAATGTAACAAGCCATATCTAAAATGAGGGACCCATCGTGCAGTGGGTTCGATTGAACGATGAGCTCAAATGCATCATTGTCGAGAAGAACTTGTACGACAATTGGGTGAAGGTATGTTCTTGATTCTATCCATTACTGTTTGTTTCTAATAGTAAATCGACTAATTAGTTCCTACAACACTGGTACAGAGTCATCCAACCGTGAAGGGCCTCCTAAACAAATCCTTTCCCCATTACGACGACTTATGCTACACATTTGGAAGAGATCGTGCAACAGGAGGGCATGCTGAAACCTTTGTCGATGTTAGGTCGAACGTGTTCGGAGGGTATGAGGGATTTCCTGTCAACGACATGGAGATCCTCTCGATGTACAGTCAGGGACTAGACATGTCACCTAGTGAAGTCATGGGCACACGACTCGATCGCTCAGCTGATGGTAGAACTGGTTCGAGTGGGTCGAAGAGGAAGTGTGGAGGCCAGACGTTAGAAACGACGAAAATCATTCGCAATGCGATGGAGTATGCGAATGACCAACTGAAGGTCATTGCAGAATGGCTGAATGTACAACGCCAAGATGCAAGCGCTACACGTGCGGAGGTCGTTAGGTAG

mRNA sequence

ATGTCTAATAGAGTTGGTATCCGCCAGCGACTAGAGGTCGGGCAACAGGACTGGGTTCGATTGAACGATGAGCTCAAATGCATCATTGTCGAGAAGAACTTGTACGACAATTGGGTGAAGAGTCATCCAACCGTGAAGGGCCTCCTAAACAAATCCTTTCCCCATTACGACGACTTATGCTACACATTTGGAAGAGATCGTGCAACAGGAGGGCATGCTGAAACCTTTGTCGATGTTAGGTCGAACGTGTTCGGAGGGTATGAGGGATTTCCTGTCAACGACATGGAGATCCTCTCGATGTACAGTCAGGGACTAGACATGTCACCTAGTGAAGTCATGGGCACACGACTCGATCGCTCAGCTGATGGTAGAACTGGTTCGAGTGGGTCGAAGAGGAAGTGTGGAGGCCAGACGTTAGAAACGACGAAAATCATTCGCAATGCGATGGAGTATGCGAATGACCAACTGAAGGTCATTGCAGAATGGCTGAATGTACAACGCCAAGATGCAAGCGCTACACGTGCGGAGGTCGTTAGGTAG

Coding sequence (CDS)

ATGTCTAATAGAGTTGGTATCCGCCAGCGACTAGAGGTCGGGCAACAGGACTGGGTTCGATTGAACGATGAGCTCAAATGCATCATTGTCGAGAAGAACTTGTACGACAATTGGGTGAAGAGTCATCCAACCGTGAAGGGCCTCCTAAACAAATCCTTTCCCCATTACGACGACTTATGCTACACATTTGGAAGAGATCGTGCAACAGGAGGGCATGCTGAAACCTTTGTCGATGTTAGGTCGAACGTGTTCGGAGGGTATGAGGGATTTCCTGTCAACGACATGGAGATCCTCTCGATGTACAGTCAGGGACTAGACATGTCACCTAGTGAAGTCATGGGCACACGACTCGATCGCTCAGCTGATGGTAGAACTGGTTCGAGTGGGTCGAAGAGGAAGTGTGGAGGCCAGACGTTAGAAACGACGAAAATCATTCGCAATGCGATGGAGTATGCGAATGACCAACTGAAGGTCATTGCAGAATGGCTGAATGTACAACGCCAAGATGCAAGCGCTACACGTGCGGAGGTCGTTAGGTAG

Protein sequence

MSNRVGIRQRLEVGQQDWVRLNDELKCIIVEKNLYDNWVKSHPTVKGLLNKSFPHYDDLCYTFGRDRATGGHAETFVDVRSNVFGGYEGFPVNDMEILSMYSQGLDMSPSEVMGTRLDRSADGRTGSSGSKRKCGGQTLETTKIIRNAMEYANDQLKVIAEWLNVQRQDASATRAEVVR

Homology

[Close]

BLAST of PI0006406 vs. ExPASy TrEMBL
Match: A0A5A7SXX8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold862G00320 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.9e-45
Identity = 96/160 (60.00%), Postives = 117/160 (73.12%), Query Frame = 0


Query: 22  NDELKCIIVEKNLYDNWVKSHPTVKGLLNKSFPHYDDLCYTFGRDRATGGHAETFVDVRS 81
           NDE KCI+ EK ++DNWVKSHPT KGLLNKSFPHYD+L Y FG+DRATGG AE+F D+  
Sbjct: 175 NDEQKCIVAEKEVFDNWVKSHPTAKGLLNKSFPHYDELSYVFGKDRATGGRAESFADIGL 234

Query: 82  NVFGGYEGFPVN---DMEILSMYSQGLDMSPSEVMGTRLDRSADGRTGSSGSKRKCGGQT 141
           N   GYE F V+   D +   MYSQGL+MSP E+MG R  + ++GR  SSGSKRK  GQ 
Sbjct: 235 NDPAGYEPFAVDATPDTDFQPMYSQGLNMSPDELMGIRNAQVSEGRYVSSGSKRKRKGQA 294

Query: 142 LETTKIIRNAMEYANDQLKVIAEWLNVQRQDASATRAEVV 179
            ++  ++R A+EY N+QL  IAEW  +QRQDAS TR EVV
Sbjct: 295 TDSGDVLRTAIEYGNEQLNCIAEWPILQRQDASQTRQEVV 334

[Close]

BLAST of PI0006406 vs. ExPASy TrEMBL
Match: A0A5A7TZA5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1871G00090 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 4.2e-45
Identity = 94/161 (58.39%), Postives = 118/161 (73.29%), Query Frame = 0


Query: 22  NDELKCIIVEKNLYDNWVKSHPTVKGLLNKSFPHYDDLCYTFGRDRATGGHAETFVDVRS 81
           NDE KCI+ EK ++D+WV+SHP  KGLLNKSFPHYD+L Y F +D ATGG AE+F DV S
Sbjct: 65  NDEQKCIVAEKEVFDDWVRSHPAAKGLLNKSFPHYDELSYVFSKDHATGGRAESFADVGS 124

Query: 82  NVFGGYEGFPVN---DMEILSMYSQGLDMSPSEVMGTRLDRSADGRTGSSGSKRKCGGQT 141
           N   GY+ F  N   D +   MYS+GL+MSP E+MGTR  R ++GR  SSGSK+K GG T
Sbjct: 125 NDPTGYDAFAANAASDTDFQPMYSRGLNMSPDELMGTRTARVSEGRYVSSGSKQKRGGST 184

Query: 142 LETTKIIRNAMEYANDQLKVIAEWLNVQRQDASATRAEVVR 180
           +++  I+R A+EY N+QL  IAEW  +QRQDA+ TR EVVR
Sbjct: 185 IDSGDILRTAIEYGNEQLNRIAEWHVLQRQDATQTRQEVVR 225

[Close]

BLAST of PI0006406 vs. ExPASy TrEMBL
Match: A0A5D3CX17 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold692G00870 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 3.9e-43
Identity = 96/162 (59.26%), Postives = 119/162 (73.46%), Query Frame = 0


Query: 22  NDELKCIIVEKNLYDNWVKSHPTVKGLLNKSFPHYDDLCYTFGRDRATGGHAETFVDVRS 81
           N ELKCIIV+K++++NW  SHP   GLLN+SFPHY++LCY FGRD ATGG  ETFVDV S
Sbjct: 12  NYELKCIIVKKDVFENW--SHPVANGLLNRSFPHYNELCYVFGRDCATGGRIETFVDVES 71

Query: 82  NVFGGYEGFPV----NDMEILSMYSQGLDMSPSEVMGTRLDRSADGRTGSSGSKRKCGGQ 141
           NV G YEG       N++EI +MYSQGLDMSP+++MGTR  R++  R  SS  KRK GGQ
Sbjct: 72  NVSGWYEGLASTDDGNNIEIPTMYSQGLDMSPNDIMGTRPKRASGDRNASSELKRKRGGQ 131

Query: 142 TLETTKIIRNAMEYANDQLKVIAEWLNVQRQDASATRAEVVR 180
           ++E  K+I + MEY NDQL    + L +Q QDASATR EVV+
Sbjct: 132 SVEIAKVICSVMEYVNDQLNQNVDRLIIQCQDASATRQEVVQ 171

[Close]

BLAST of PI0006406 vs. ExPASy TrEMBL
Match: A0A5A7TYQ6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G002060 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 9.6e-42
Identity = 90/157 (57.32%), Postives = 112/157 (71.34%), Query Frame = 0


Query: 26  KCIIVEKNLYDNWVKSHPTVKGLLNKSFPHYDDLCYTFGRDRATGGHAETFVDVRSNVFG 85
           KCII EK ++D+WVKSHP  KGLLNKSF HYD+L Y FG+DRATGG AE+F D+ SN   
Sbjct: 67  KCIIAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPA 126

Query: 86  GYEGF---PVNDMEILSMYSQGLDMSPSEVMGTRLDRSADGRTGSSGSKRKCGGQTLETT 145
           GY+ F    V+D + L MYS GL+MSP ++M TR  R ++ R  SSGSKRK  G   ++ 
Sbjct: 127 GYDAFAADDVSDTDFLPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRSGHATDSG 186

Query: 146 KIIRNAMEYANDQLKVIAEWLNVQRQDASATRAEVVR 180
            I+R AMEY N+QL  IAEW  +QRQDA+ TR E+VR
Sbjct: 187 DIVRTAMEYGNEQLHRIAEWPILQRQDATETRQEIVR 223

[Close]

BLAST of PI0006406 vs. ExPASy TrEMBL
Match: A0A5D3C1M0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1317G00570 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 2.8e-41
Identity = 91/161 (56.52%), Postives = 113/161 (70.19%), Query Frame = 0


Query: 22  NDELKCIIVEKNLYDNWVKSHPTVKGLLNKSFPHYDDLCYTFGRDRATGGHAETFVDVRS 81
           NDE KCI+VEK L+D+WVKSHP  KGLLNKSF HYD+L Y FG+DRATGG AE+F D+ S
Sbjct: 94  NDEKKCIVVEKELFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGS 153

Query: 82  NVFGGYEGFPVN---DMEILSMYSQGLDMSPSEVMGTRLDRSADGRTGSSGSKRKCGGQT 141
           N   GY+    +   D +   MYS GL+MSP ++M TR  R ++ R  SSGSKRK  G  
Sbjct: 154 NDPPGYDAGAADAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHA 213

Query: 142 LETTKIIRNAMEYANDQLKVIAEWLNVQRQDASATRAEVVR 180
            ++  I+R A+EY N+QL  IAEW  +QRQDAS TR E+VR
Sbjct: 214 TDSGDIVRTAIEYGNEQLHRIAEWPILQRQDASQTRQEIVR 254

[Close]

BLAST of PI0006406 vs. NCBI nr
Match: KAA0035413.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK25738.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 192.2 bits (487), Expect = 3.9e-45
Identity = 96/160 (60.00%), Postives = 117/160 (73.12%), Query Frame = 0


Query: 22  NDELKCIIVEKNLYDNWVKSHPTVKGLLNKSFPHYDDLCYTFGRDRATGGHAETFVDVRS 81
           NDE KCI+ EK ++DNWVKSHPT KGLLNKSFPHYD+L Y FG+DRATGG AE+F D+  
Sbjct: 175 NDEQKCIVAEKEVFDNWVKSHPTAKGLLNKSFPHYDELSYVFGKDRATGGRAESFADIGL 234

Query: 82  NVFGGYEGFPVN---DMEILSMYSQGLDMSPSEVMGTRLDRSADGRTGSSGSKRKCGGQT 141
           N   GYE F V+   D +   MYSQGL+MSP E+MG R  + ++GR  SSGSKRK  GQ 
Sbjct: 235 NDPAGYEPFAVDATPDTDFQPMYSQGLNMSPDELMGIRNAQVSEGRYVSSGSKRKRKGQA 294

Query: 142 LETTKIIRNAMEYANDQLKVIAEWLNVQRQDASATRAEVV 179
            ++  ++R A+EY N+QL  IAEW  +QRQDAS TR EVV
Sbjct: 295 TDSGDVLRTAIEYGNEQLNCIAEWPILQRQDASQTRQEVV 334

[Close]

BLAST of PI0006406 vs. NCBI nr
Match: KAA0048374.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04074.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 191.0 bits (484), Expect = 8.6e-45
Identity = 94/161 (58.39%), Postives = 118/161 (73.29%), Query Frame = 0


Query: 22  NDELKCIIVEKNLYDNWVKSHPTVKGLLNKSFPHYDDLCYTFGRDRATGGHAETFVDVRS 81
           NDE KCI+ EK ++D+WV+SHP  KGLLNKSFPHYD+L Y F +D ATGG AE+F DV S
Sbjct: 65  NDEQKCIVAEKEVFDDWVRSHPAAKGLLNKSFPHYDELSYVFSKDHATGGRAESFADVGS 124

Query: 82  NVFGGYEGFPVN---DMEILSMYSQGLDMSPSEVMGTRLDRSADGRTGSSGSKRKCGGQT 141
           N   GY+ F  N   D +   MYS+GL+MSP E+MGTR  R ++GR  SSGSK+K GG T
Sbjct: 125 NDPTGYDAFAANAASDTDFQPMYSRGLNMSPDELMGTRTARVSEGRYVSSGSKQKRGGST 184

Query: 142 LETTKIIRNAMEYANDQLKVIAEWLNVQRQDASATRAEVVR 180
           +++  I+R A+EY N+QL  IAEW  +QRQDA+ TR EVVR
Sbjct: 185 IDSGDILRTAIEYGNEQLNRIAEWHVLQRQDATQTRQEVVR 225

[Close]

BLAST of PI0006406 vs. NCBI nr
Match: KAA0061395.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK14749.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 184.5 bits (467), Expect = 8.0e-43
Identity = 96/162 (59.26%), Postives = 119/162 (73.46%), Query Frame = 0


Query: 22  NDELKCIIVEKNLYDNWVKSHPTVKGLLNKSFPHYDDLCYTFGRDRATGGHAETFVDVRS 81
           N ELKCIIV+K++++NW  SHP   GLLN+SFPHY++LCY FGRD ATGG  ETFVDV S
Sbjct: 12  NYELKCIIVKKDVFENW--SHPVANGLLNRSFPHYNELCYVFGRDCATGGRIETFVDVES 71

Query: 82  NVFGGYEGFPV----NDMEILSMYSQGLDMSPSEVMGTRLDRSADGRTGSSGSKRKCGGQ 141
           NV G YEG       N++EI +MYSQGLDMSP+++MGTR  R++  R  SS  KRK GGQ
Sbjct: 72  NVSGWYEGLASTDDGNNIEIPTMYSQGLDMSPNDIMGTRPKRASGDRNASSELKRKRGGQ 131

Query: 142 TLETTKIIRNAMEYANDQLKVIAEWLNVQRQDASATRAEVVR 180
           ++E  K+I + MEY NDQL    + L +Q QDASATR EVV+
Sbjct: 132 SVEIAKVICSVMEYVNDQLNQNVDRLIIQCQDASATRQEVVQ 171

[Close]

BLAST of PI0006406 vs. NCBI nr
Match: KAA0048280.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 179.9 bits (455), Expect = 2.0e-41
Identity = 90/157 (57.32%), Postives = 112/157 (71.34%), Query Frame = 0


Query: 26  KCIIVEKNLYDNWVKSHPTVKGLLNKSFPHYDDLCYTFGRDRATGGHAETFVDVRSNVFG 85
           KCII EK ++D+WVKSHP  KGLLNKSF HYD+L Y FG+DRATGG AE+F D+ SN   
Sbjct: 67  KCIIAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPA 126

Query: 86  GYEGF---PVNDMEILSMYSQGLDMSPSEVMGTRLDRSADGRTGSSGSKRKCGGQTLETT 145
           GY+ F    V+D + L MYS GL+MSP ++M TR  R ++ R  SSGSKRK  G   ++ 
Sbjct: 127 GYDAFAADDVSDTDFLPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRSGHATDSG 186

Query: 146 KIIRNAMEYANDQLKVIAEWLNVQRQDASATRAEVVR 180
            I+R AMEY N+QL  IAEW  +QRQDA+ TR E+VR
Sbjct: 187 DIVRTAMEYGNEQLHRIAEWPILQRQDATETRQEIVR 223

[Close]

BLAST of PI0006406 vs. NCBI nr
Match: KAA0047075.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 178.3 bits (451), Expect = 5.8e-41
Identity = 91/161 (56.52%), Postives = 112/161 (69.57%), Query Frame = 0


Query: 22  NDELKCIIVEKNLYDNWVKSHPTVKGLLNKSFPHYDDLCYTFGRDRATGGHAETFVDVRS 81
           NDE KCI+VEK L+D+WVKSHP  KGLLNKSF HYD+L Y FG+DRATGG AE+F D+ S
Sbjct: 94  NDEKKCIVVEKELFDDWVKSHPMAKGLLNKSFVHYDELSYVFGKDRATGGRAESFTDIGS 153

Query: 82  NVFGGYEGFPVN---DMEILSMYSQGLDMSPSEVMGTRLDRSADGRTGSSGSKRKCGGQT 141
           N   GY+ F  +   D     MYS GL+MSP ++M TR  R ++ R  SSGSKRK  G  
Sbjct: 154 NDPAGYDAFAADAAPDTNFSPMYSSGLNMSPDDLMETRTVRVSERRNVSSGSKRKRPGHV 213

Query: 142 LETTKIIRNAMEYANDQLKVIAEWLNVQRQDASATRAEVVR 180
            ++  I+  A+EY N+QL  IAEW  +QRQDAS TR E+VR
Sbjct: 214 TDSGDIVCTAIEYRNEQLHRIAEWPILQRQDASQTRQEIVR 254

The following BLAST results are available for this feature:

BLAST of PI0006406 vs.


Match Name	E-value	Identity	Description

BLAST of PI0006406 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SXX8	1.9e-45	60.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TZA5	4.2e-45	58.39	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CX17	3.9e-43	59.26	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TYQ6	9.6e-42	57.32	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3C1M0	2.8e-41	56.52	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0006406 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035413.1	3.9e-45	60.00	retrotransposon protein [Cucumis melo var. makuwa] >TYK25738.1 retrotransposon p...	[more]
KAA0048374.1	8.6e-45	58.39	retrotransposon protein [Cucumis melo var. makuwa] >TYK04074.1 retrotransposon p...	[more]
KAA0061395.1	8.0e-43	59.26	retrotransposon protein [Cucumis melo var. makuwa] >TYK14749.1 retrotransposon p...	[more]
KAA0048280.1	2.0e-41	57.32	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0047075.1	5.8e-41	56.52	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0006406 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..135
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 22..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0006406.1	PI0006406.1	mRNA