PI0006316 (gene) Melon (PI 482460) v1

Overview


Name	PI0006316
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Reverse transcriptase
Location	chr07: 5941742 .. 5942278 (-)
RNA-Seq Expression	PI0006316
Synteny	PI0006316

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATATTGCAAGTCAATGCCGCGGGAGGCTCTGTGCATGCAGCAAACCAAATTGATGACATGGGATGTGTGGGATGCGGCGGTCCTCATAACACTGACGCATGCCCACTCAACACTGAAACTGTCGCGTTCATAAGAAATGACCCCTTCTCCAATACTTACAACCCTGGTTGGAGGAACCATCCTAATTTTGGATGGGGAGGATCGGGTCAACAAAATCAAGGGCGACATGGTGGTCAAGGTGACCATCGCGGGGAAGCATCTGGCTCCCACGCGAGGTACCAGAATAATAGACCCCAACACTCCCATCATCAACAACAACCCACCACCACTGCTCCATCCACTTCATCTATGGAAAACCTCCTCCGCGAATACATGCAGAAAATGGATGCTCTTCTGCAAAGTCAAACTTCATCAATTCGTAATCTGGAGGTACAATTAGGGCAGCTTGCCAGTGATGTCTCCGGAAGACCACAGGGATCTCTCCCAAGCAATACAGAAACGCCAAATCAGGTGGGGGGATCTGGTAAATAG

mRNA sequence

ATGGCAATATTGCAAGTCAATGCCGCGGGAGGCTCTGTGCATGCAGCAAACCAAATTGATGACATGGGATGTGTGGGATGCGGCGGTGACCATCGCGGGGAAGCATCTGGCTCCCACGCGAGGTACCAGAATAATAGACCCCAACACTCCCATCATCAACAACAACCCACCACCACTGCTCCATCCACTTCATCTATGGAAAACCTCCTCCGCGAATACATGCAGAAAATGGATGCTCTTCTGCAAAGTCAAACTTCATCAATTCGTAATCTGGAGGTACAATTAGGGCAGCTTGCCAGTGATGTCTCCGGAAGACCACAGGGATCTCTCCCAAGCAATACAGAAACGCCAAATCAGGTGGGGGGATCTGGTAAATAG

Coding sequence (CDS)

ATGGCAATATTGCAAGTCAATGCCGCGGGAGGCTCTGTGCATGCAGCAAACCAAATTGATGACATGGGATGTGTGGGATGCGGCGGTGACCATCGCGGGGAAGCATCTGGCTCCCACGCGAGGTACCAGAATAATAGACCCCAACACTCCCATCATCAACAACAACCCACCACCACTGCTCCATCCACTTCATCTATGGAAAACCTCCTCCGCGAATACATGCAGAAAATGGATGCTCTTCTGCAAAGTCAAACTTCATCAATTCGTAATCTGGAGGTACAATTAGGGCAGCTTGCCAGTGATGTCTCCGGAAGACCACAGGGATCTCTCCCAAGCAATACAGAAACGCCAAATCAGGTGGGGGGATCTGGTAAATAG

Protein sequence

MAILQVNAAGGSVHAANQIDDMGCVGCGGDHRGEASGSHARYQNNRPQHSHHQQQPTTTAPSTSSMENLLREYMQKMDALLQSQTSSIRNLEVQLGQLASDVSGRPQGSLPSNTETPNQVGGSGK

Homology

[Close]

BLAST of PI0006316 vs. ExPASy TrEMBL
Match: A0A0A0KMN3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G055570 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 2.1e-19
Identity = 66/131 (50.38%), Postives = 90/131 (68.70%), Query Frame = 0


Query: 1   MAILQVNAAGGSVHAANQIDDMGCVGCGGDHRGEASGSHARYQNNRPQH-----SHH-QQ 60
           MA+L+VNAAG S+   +Q  ++G V CGG   GE SG   R  +  PQ      +HH   
Sbjct: 1   MALLEVNAAGSSLQIVHQTAELGFVECGGP--GEVSGYCPRKYHEWPQQPIQHLNHHILN 60

Query: 61  QPTTTAPSTSSMENLLREYMQKMDALLQSQTSSIRNLEVQLGQLASDVSGRPQGSLPSNT 120
           Q  +++ S  SME+L +EYMQ+ DALLQSQ +SI+NLE+Q+GQ+A+D+S +P+G+LPSNT
Sbjct: 61  QSHSSSSSLPSMESLFQEYMQRNDALLQSQAASIKNLELQMGQIANDISRQPKGTLPSNT 120

Query: 121 ETPNQVGGSGK 126
           E P Q G SGK
Sbjct: 121 EIPIQGGSSGK 129

[Close]

BLAST of PI0006316 vs. ExPASy TrEMBL
Match: A0A5D3D2S0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00800 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 2.3e-18
Identity = 71/156 (45.51%), Postives = 85/156 (54.49%), Query Frame = 0


Query: 1   MAILQVNAAGGSVHAANQIDDMGCVGCG-----------------------------GDH 60
           MA+ QV+A G  V A  Q+D+M  VGCG                             G++
Sbjct: 64  MALSQVDAVGNYVQAVKQVDEMRPVGCGEPHTTDACLLNAEIAAYVKSYPYSNTYNAGNY 123

Query: 61  RGEASGSHARYQNNRPQHS--HHQQQPTTTAPSTSSMENLLREYMQKMDALLQSQTSSIR 120
           RGEA   H +   +RP +S   HQQ  T T  S SSM  LLR+YMQ+ DA +QSQT+SI 
Sbjct: 124 RGEAP-DHRQRHYDRPHYSAPQHQQATTNTPSSFSSMVALLRKYMQRKDAFMQSQTTSII 183

Query: 121 NLEVQLGQLASDVSGRPQGSLPSNTETPNQVGGSGK 126
           NLE+ LGQLA D SGRP GSLPSN E PN   G  K
Sbjct: 184 NLEIHLGQLAKDFSGRPHGSLPSNIEVPNHNNGVHK 218

[Close]

BLAST of PI0006316 vs. ExPASy TrEMBL
Match: A0A5D3DWD5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold749G00200 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.7e-16
Identity = 61/110 (55.45%), Postives = 72/110 (65.45%), Query Frame = 0


Query: 23  GCVGCG---------GDHRGEASGSHARYQNNRPQHS-HHQQQPTTTAPS-TSSMENLLR 82
           GCV CG         G + G+ASG   R   +RP HS   QQQ TT  PS +SSME L+R
Sbjct: 3   GCVRCGSPQNIDGGQGSYHGKASGYRQRQHQDRPHHSTPQQQQATTNTPSFSSSMETLIR 62

Query: 83  EYMQKMDALLQSQTSSIRNLEVQLGQLASDVSGRPQGSLPSNTETPNQVG 122
            YM++ DALLQSQ +SIRNLE+Q+GQ+A D S RPQ  LPSNTE  NQ G
Sbjct: 63  GYMKRNDALLQSQATSIRNLELQMGQIAIDFSERPQVFLPSNTEMSNQAG 112

[Close]

BLAST of PI0006316 vs. ExPASy TrEMBL
Match: A0A5A7U1G5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00940 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.9e-12
Identity = 41/60 (68.33%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 66  MENLLREYMQKMDALLQSQTSSIRNLEVQLGQLASDVSGRPQGSLPSNTETPNQVGGSGK 125
           ME LLREYMQ+ DALLQ+Q +SI+NL++QL QLASD+SGRP+GSLP++T+TPN+VG   K
Sbjct: 1   METLLREYMQRNDALLQTQATSIKNLKLQLAQLASDISGRPRGSLPNSTKTPNKVGDPRK 60

[Close]

BLAST of PI0006316 vs. ExPASy TrEMBL
Match: A0A5A7TGS2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold32G00540 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.5e-12
Identity = 43/65 (66.15%), Postives = 51/65 (78.46%), Query Frame = 0


Query: 61  PSTSSMENLLREYMQKMDALLQSQTSSIRNLEVQLGQLASDVSGRPQGSLPSNTETPNQV 120
           P  +   N ++   Q  DALLQSQ SSI+NLE+QLGQL S++S RP+GSLPSNTETPNQV
Sbjct: 11  PQVNGTGNFIQAMQQWNDALLQSQASSIKNLELQLGQLFSNISRRPKGSLPSNTETPNQV 70

Query: 121 GGSGK 126
           GGSGK
Sbjct: 71  GGSGK 75

[Close]

BLAST of PI0006316 vs. NCBI nr
Match: KAA0040852.1 (hypothetical protein E6C27_scaffold333G00770 [Cucumis melo var. makuwa] >TYK17828.1 hypothetical protein E5676_scaffold306G00800 [Cucumis melo var. makuwa])

HSP 1 Score: 101.7 bits (252), Expect = 4.8e-18
Identity = 71/156 (45.51%), Postives = 85/156 (54.49%), Query Frame = 0


Query: 1   MAILQVNAAGGSVHAANQIDDMGCVGCG-----------------------------GDH 60
           MA+ QV+A G  V A  Q+D+M  VGCG                             G++
Sbjct: 64  MALSQVDAVGNYVQAVKQVDEMRPVGCGEPHTTDACLLNAEIAAYVKSYPYSNTYNAGNY 123

Query: 61  RGEASGSHARYQNNRPQHS--HHQQQPTTTAPSTSSMENLLREYMQKMDALLQSQTSSIR 120
           RGEA   H +   +RP +S   HQQ  T T  S SSM  LLR+YMQ+ DA +QSQT+SI 
Sbjct: 124 RGEAP-DHRQRHYDRPHYSAPQHQQATTNTPSSFSSMVALLRKYMQRKDAFMQSQTTSII 183

Query: 121 NLEVQLGQLASDVSGRPQGSLPSNTETPNQVGGSGK 126
           NLE+ LGQLA D SGRP GSLPSN E PN   G  K
Sbjct: 184 NLEIHLGQLAKDFSGRPHGSLPSNIEVPNHNNGVHK 218

[Close]

BLAST of PI0006316 vs. NCBI nr
Match: TYK27798.1 (hypothetical protein E5676_scaffold749G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 3.4e-16
Identity = 61/110 (55.45%), Postives = 72/110 (65.45%), Query Frame = 0


Query: 23  GCVGCG---------GDHRGEASGSHARYQNNRPQHS-HHQQQPTTTAPS-TSSMENLLR 82
           GCV CG         G + G+ASG   R   +RP HS   QQQ TT  PS +SSME L+R
Sbjct: 3   GCVRCGSPQNIDGGQGSYHGKASGYRQRQHQDRPHHSTPQQQQATTNTPSFSSSMETLIR 62

Query: 83  EYMQKMDALLQSQTSSIRNLEVQLGQLASDVSGRPQGSLPSNTETPNQVG 122
            YM++ DALLQSQ +SIRNLE+Q+GQ+A D S RPQ  LPSNTE  NQ G
Sbjct: 63  GYMKRNDALLQSQATSIRNLELQMGQIAIDFSERPQVFLPSNTEMSNQAG 112

[Close]

BLAST of PI0006316 vs. NCBI nr
Match: KAA0049612.1 (hypothetical protein E6C27_scaffold163G00690 [Cucumis melo var. makuwa] >TYK15970.1 hypothetical protein E5676_scaffold94G00940 [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 3.9e-12
Identity = 41/60 (68.33%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 66  MENLLREYMQKMDALLQSQTSSIRNLEVQLGQLASDVSGRPQGSLPSNTETPNQVGGSGK 125
           ME LLREYMQ+ DALLQ+Q +SI+NL++QL QLASD+SGRP+GSLP++T+TPN+VG   K
Sbjct: 1   METLLREYMQRNDALLQTQATSIKNLKLQLAQLASDISGRPRGSLPNSTKTPNKVGDPRK 60

[Close]

BLAST of PI0006316 vs. NCBI nr
Match: KAA0041246.1 (uncharacterized protein E6C27_scaffold128G002220 [Cucumis melo var. makuwa] >TYK16045.1 uncharacterized protein E5676_scaffold32G00540 [Cucumis melo var. makuwa])

HSP 1 Score: 81.6 bits (200), Expect = 5.1e-12
Identity = 43/65 (66.15%), Postives = 51/65 (78.46%), Query Frame = 0


Query: 61  PSTSSMENLLREYMQKMDALLQSQTSSIRNLEVQLGQLASDVSGRPQGSLPSNTETPNQV 120
           P  +   N ++   Q  DALLQSQ SSI+NLE+QLGQL S++S RP+GSLPSNTETPNQV
Sbjct: 11  PQVNGTGNFIQAMQQWNDALLQSQASSIKNLELQLGQLFSNISRRPKGSLPSNTETPNQV 70

Query: 121 GGSGK 126
           GGSGK
Sbjct: 71  GGSGK 75

[Close]

BLAST of PI0006316 vs. NCBI nr
Match: XP_030509259.1 (uncharacterized protein LOC115723937 [Cannabis sativa])

HSP 1 Score: 80.5 bits (197), Expect = 1.1e-11
Identity = 44/79 (55.70%), Postives = 57/79 (72.15%), Query Frame = 0


Query: 43  QNNRPQHSHHQQQPTTTAPSTSSMENLLREYMQKMDALLQSQTSSIRNLEVQLGQLASDV 102
           Q  RPQ  H  Q        TSS+E+L+R+YM K DA++QSQ +S+RNLEVQLGQLA+D+
Sbjct: 372 QQPRPQQPHQPQ-----GSQTSSLESLMRDYMAKNDAVIQSQAASLRNLEVQLGQLANDL 431

Query: 103 SGRPQGSLPSNTETPNQVG 122
             RPQG+LPS+TE P + G
Sbjct: 432 KNRPQGTLPSDTENPRRDG 445

The following BLAST results are available for this feature:

BLAST of PI0006316 vs.


Match Name	E-value	Identity	Description

BLAST of PI0006316 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMN3	2.1e-19	50.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G055570 PE=4 SV=1	[more]
A0A5D3D2S0	2.3e-18	45.51	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DWD5	1.7e-16	55.45	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U1G5	1.9e-12	68.33	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TGS2	2.5e-12	66.15	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0006316 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040852.1	4.8e-18	45.51	hypothetical protein E6C27_scaffold333G00770 [Cucumis melo var. makuwa] >TYK1782...	[more]
TYK27798.1	3.4e-16	55.45	hypothetical protein E5676_scaffold749G00200 [Cucumis melo var. makuwa]	[more]
KAA0049612.1	3.9e-12	68.33	hypothetical protein E6C27_scaffold163G00690 [Cucumis melo var. makuwa] >TYK1597...	[more]
KAA0041246.1	5.1e-12	66.15	uncharacterized protein E6C27_scaffold128G002220 [Cucumis melo var. makuwa] >TYK...	[more]
XP_030509259.1	1.1e-11	55.70	uncharacterized protein LOC115723937 [Cannabis sativa]	[more]

BLAST of PI0006316 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0006316.1	PI0006316.1	mRNA