PI0006220 (gene) Melon (PI 482460) v1

Overview


Name	PI0006220
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotrans_gag domain-containing protein
Location	chr11: 7585858 .. 7586721 (+)
RNA-Seq Expression	PI0006220
Synteny	PI0006220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGCTCAACAATAACAACCAAGTTGTCCCTTTGAACGACACTACACAACAAGAGCATCCCATAATTATAGCCCATGACGTAACTAAGCCAATTCGAGAATACGCATCGGCTAGTCTGTACGATTTCAATATTGGTATCACCTACTCTGAGTTTAGAGACAACACCGAATGTCAAATGAAGCTGGTGATGTTACAAATGATTTAGAACGCCGGGCAATTTGGGGGAGAACCAGGCGAGGACCCCCATGATCATATTAAGAGCTTTTATTCAATATGCTCTTTCTTCCATCCATCGAGCATAATGCAAGACGAGCTCCATCTCACGCTATTTCCTTTCACTTTAAAGGAGGATGCAAAGAGATGGCTGGACTAGATAGAGGTAGGGGAAATTACTTCTTGGGACCAACTTATCAATAAATTCATGATGAAGGTCTTTCCACCTCATGAAAATGCCAAAAGAAGGAGGGACATAATGAATTTCTAGCAACAAGGAAGAGAGTTTTTATATGAGACATAGGGGCGTTATAAAAGATTGATAAAGGCTTGCCCGCATAACAGCATACCAAAATGTATTTTGATTGAAGATTTCTATGGCGGGCTGAACAAAGAAATGAAACATAGTGCGAATGCTGCGTTTCAAAGAGGGATGCTTAAGCAATCTTATAACCAGATTAAAGCTACCTTGGATTCATTATCCAAGAATCAAGAAGAATGGGAAGATGACGATTATGGTTCTCATTACGGAAGAAGACAGAGGAATGATGAGGGAATGGATAGAAATGGAGTAGTGGCCTTACCAAACCAAATGACTGCGATGAACAATCTCTTGCAATCAATGGTTCATACACAAAGCAGAAATTGA

mRNA sequence

ATGACGCTCAACAATAACAACCAAGTTGTCCCTTTGAACGACACTACACAACAAGAGCATCCCATAATTATAGCCCATGACGTAACTAAGCCAATTCGAGAATACGCATCGGCTAGTCTGTACGATTTCAATATTGGTATCACCTACTCTGAGTTTAGAGACAACACCGAATGTCAAATGAAGCTGGGGCGTTATAAAAGATTGATAAAGGCTTGCCCGCATAACAGCATACCAAAATGTATTTTGATTGAAGATTTCTATGGCGGGCTGAACAAAGAAATGAAACATAGTGCGAATGCTGCGTTTCAAAGAGGGATGCTTAAGCAATCTTATAACCAGATTAAAGCTACCTTGGATTCATTATCCAAGAATCAAGAAGAATGGGAAGATGACGATTATGGTTCTCATTACGGAAGAAGACAGAGGAATGATGAGGGAATGGATAGAAATGGAGTAGTGGCCTTACCAAACCAAATGACTGCGATGAACAATCTCTTGCAATCAATGGTTCATACACAAAGCAGAAATTGA

Coding sequence (CDS)

ATGACGCTCAACAATAACAACCAAGTTGTCCCTTTGAACGACACTACACAACAAGAGCATCCCATAATTATAGCCCATGACGTAACTAAGCCAATTCGAGAATACGCATCGGCTAGTCTGTACGATTTCAATATTGGTATCACCTACTCTGAGTTTAGAGACAACACCGAATGTCAAATGAAGCTGGGGCGTTATAAAAGATTGATAAAGGCTTGCCCGCATAACAGCATACCAAAATGTATTTTGATTGAAGATTTCTATGGCGGGCTGAACAAAGAAATGAAACATAGTGCGAATGCTGCGTTTCAAAGAGGGATGCTTAAGCAATCTTATAACCAGATTAAAGCTACCTTGGATTCATTATCCAAGAATCAAGAAGAATGGGAAGATGACGATTATGGTTCTCATTACGGAAGAAGACAGAGGAATGATGAGGGAATGGATAGAAATGGAGTAGTGGCCTTACCAAACCAAATGACTGCGATGAACAATCTCTTGCAATCAATGGTTCATACACAAAGCAGAAATTGA

Protein sequence

MTLNNNNQVVPLNDTTQQEHPIIIAHDVTKPIREYASASLYDFNIGITYSEFRDNTECQMKLGRYKRLIKACPHNSIPKCILIEDFYGGLNKEMKHSANAAFQRGMLKQSYNQIKATLDSLSKNQEEWEDDDYGSHYGRRQRNDEGMDRNGVVALPNQMTAMNNLLQSMVHTQSRN

Homology

[Close]

BLAST of PI0006220 vs. ExPASy TrEMBL
Match: A0A0A0K6F9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G307410 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.0e-23
Identity = 62/121 (51.24%), Postives = 80/121 (66.12%), Query Frame = 0


Query: 53  RDNTECQMKLGRYKRLIKACPHNSIPKCILIEDFYGGLNKEMKHSANAAFQRGMLKQSYN 112
           RD         R+KRL+KACP + IP+C+ +E FY GL+K+     N  F  GML+ SYN
Sbjct: 6   RDKENMHDTWSRFKRLVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGMLRSSYN 65

Query: 113 QIKATLDSLSKNQEEWEDDDYGSHYGRRQRNDEGMDRNGVVALPNQMTAMNNLLQSMVHT 172
           QIKATLDS+S N +EW+D  +GS +  R R  EG+D++ VV L  QM AMNNLLQSM  +
Sbjct: 66  QIKATLDSMSNNSQEWDDIGFGSRH--RGRTKEGLDKSVVVVLQGQMIAMNNLLQSMTLS 124

Query: 173 Q 174
           Q
Sbjct: 126 Q 124

[Close]

BLAST of PI0006220 vs. ExPASy TrEMBL
Match: A0A5D3CC26 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00270 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 5.0e-19
Identity = 55/116 (47.41%), Postives = 76/116 (65.52%), Query Frame = 0


Query: 64  RYKRLIKACPHNSIPKCILIEDFYGGLNKEMKHSANAAFQRGMLKQSYNQIKATLDSLSK 123
           R+KR+IK CPH+ IP+C+L+E FY GL+K    SAN  F  GML+ SYNQIK  LD+++ 
Sbjct: 17  RFKRMIKRCPHHCIPECVLMEQFYFGLSKNTLQSANIVFTGGMLRSSYNQIKNMLDTMAS 76

Query: 124 NQEEWEDDDYGSH------YGRRQRNDEGMDRNGVVALPNQMTAMNNLLQSMVHTQ 174
           N +EW D+ +GS        G R R ++G+D + +VAL  Q+  M N+LQSM   Q
Sbjct: 77  NSQEWRDESFGSRNDSRGTKGNRGRIEDGIDMSIMVALQGQVIEM-NILQSMALLQ 131

[Close]

BLAST of PI0006220 vs. ExPASy TrEMBL
Match: A0A5A7TUE1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1251G00450 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.2e-14
Identity = 47/104 (45.19%), Postives = 64/104 (61.54%), Query Frame = 0


Query: 66  KRLIKACPHNSIPKCILIEDFYGGLNKEMKHSANAAFQRGMLKQSYNQIKATLDSLSKNQ 125
           KRL+KAC H+ I KC+L+E FY  L+++ + + +  F  G+L+ SYNQ K  LD++  N 
Sbjct: 36  KRLVKACLHHGISKCVLMEKFYFRLSEDAQQTVDVVFVGGVLRNSYNQTKTMLDTMISNS 95

Query: 126 EEWEDDDYGSHY---GRRQRNDEGMDRNGVVALPNQMTAMNNLL 167
           +E  DD   S       R R DEGMDRN +V L  Q+T MN LL
Sbjct: 96  QECRDDCISSQQENGENRGRTDEGMDRNAMVTLQGQVTEMNKLL 139

[Close]

BLAST of PI0006220 vs. ExPASy TrEMBL
Match: A0A0A0L0Y4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G131150 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.9e-14
Identity = 46/112 (41.07%), Postives = 73/112 (65.18%), Query Frame = 0


Query: 68  LIKACPHNSIPKCILIEDFYGGLNKEMKHSANAAFQRGMLKQSYNQIKATLDSLSKNQEE 127
           ++K C H++I  C++IE FY GL+++ +   +A F  GML+ S N IK TLD++  N +E
Sbjct: 1   MMKGCLHHNILGCVIIEQFYFGLSRDTQQFVDAVFIGGMLRLSCNHIKTTLDAMVSNSQE 60

Query: 128 WEDDDYGSHY----GRRQ--RNDEGMDRNGVVALPNQMTAMNNLLQSMVHTQ 174
           W D+++GSH      RR+  R ++G + N ++ L +Q+T MN LLQSM  +Q
Sbjct: 61  WRDNEFGSHNESKGNRREKGRTNKGSNGNAMITLQSQVTEMNKLLQSMALSQ 112

[Close]

BLAST of PI0006220 vs. ExPASy TrEMBL
Match: A0A5A7V1F3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G002850 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 5.4e-13
Identity = 50/160 (31.25%), Postives = 74/160 (46.25%), Query Frame = 0


Query: 24  IAHDVTKPIREYASASLYDFNIGITYSEFRDNTECQMK---------------------- 83
           +AH++ +PIR YA  SLY+FN GI Y EF +N   + K                      
Sbjct: 18  LAHNLHRPIRSYALPSLYEFNPGIAYPEFGENAHYESKDDAKRWANSMEHGEVTTWEDLI 77

Query: 84  ----------------------------------LGRYKRLIKACPHNSIPKCILIEDFY 128
                                                +KR++KAC H+ I K +L+E FY
Sbjct: 78  EKFMKKFFPTIKIAKRRQDLILFKQRDRKNLHDAWSIFKRMVKACLHHGITKYVLMEGFY 137

[Close]

BLAST of PI0006220 vs. NCBI nr
Match: KGN44484.1 (hypothetical protein Csa_015918 [Cucumis sativus])

HSP 1 Score: 119.0 bits (297), Expect = 4.1e-23
Identity = 62/121 (51.24%), Postives = 80/121 (66.12%), Query Frame = 0


Query: 53  RDNTECQMKLGRYKRLIKACPHNSIPKCILIEDFYGGLNKEMKHSANAAFQRGMLKQSYN 112
           RD         R+KRL+KACP + IP+C+ +E FY GL+K+     N  F  GML+ SYN
Sbjct: 6   RDKENMHDTWSRFKRLVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGMLRSSYN 65

Query: 113 QIKATLDSLSKNQEEWEDDDYGSHYGRRQRNDEGMDRNGVVALPNQMTAMNNLLQSMVHT 172
           QIKATLDS+S N +EW+D  +GS +  R R  EG+D++ VV L  QM AMNNLLQSM  +
Sbjct: 66  QIKATLDSMSNNSQEWDDIGFGSRH--RGRTKEGLDKSVVVVLQGQMIAMNNLLQSMTLS 124

Query: 173 Q 174
           Q
Sbjct: 126 Q 124

[Close]

BLAST of PI0006220 vs. NCBI nr
Match: KAA0048713.1 (hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa] >TYK07916.1 hypothetical protein E5676_scaffold265G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 104.4 bits (259), Expect = 1.0e-18
Identity = 55/116 (47.41%), Postives = 76/116 (65.52%), Query Frame = 0


Query: 64  RYKRLIKACPHNSIPKCILIEDFYGGLNKEMKHSANAAFQRGMLKQSYNQIKATLDSLSK 123
           R+KR+IK CPH+ IP+C+L+E FY GL+K    SAN  F  GML+ SYNQIK  LD+++ 
Sbjct: 17  RFKRMIKRCPHHCIPECVLMEQFYFGLSKNTLQSANIVFTGGMLRSSYNQIKNMLDTMAS 76

Query: 124 NQEEWEDDDYGSH------YGRRQRNDEGMDRNGVVALPNQMTAMNNLLQSMVHTQ 174
           N +EW D+ +GS        G R R ++G+D + +VAL  Q+  M N+LQSM   Q
Sbjct: 77  NSQEWRDESFGSRNDSRGTKGNRGRIEDGIDMSIMVALQGQVIEM-NILQSMALLQ 131

[Close]

BLAST of PI0006220 vs. NCBI nr
Match: KAA0046468.1 (hypothetical protein E6C27_scaffold543G00470 [Cucumis melo var. makuwa] >TYJ97743.1 hypothetical protein E5676_scaffold1251G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 4.5e-14
Identity = 47/104 (45.19%), Postives = 64/104 (61.54%), Query Frame = 0


Query: 66  KRLIKACPHNSIPKCILIEDFYGGLNKEMKHSANAAFQRGMLKQSYNQIKATLDSLSKNQ 125
           KRL+KAC H+ I KC+L+E FY  L+++ + + +  F  G+L+ SYNQ K  LD++  N 
Sbjct: 36  KRLVKACLHHGISKCVLMEKFYFRLSEDAQQTVDVVFVGGVLRNSYNQTKTMLDTMISNS 95

Query: 126 EEWEDDDYGSHY---GRRQRNDEGMDRNGVVALPNQMTAMNNLL 167
           +E  DD   S       R R DEGMDRN +V L  Q+T MN LL
Sbjct: 96  QECRDDCISSQQENGENRGRTDEGMDRNAMVTLQGQVTEMNKLL 139

[Close]

BLAST of PI0006220 vs. NCBI nr
Match: KGN53801.1 (hypothetical protein Csa_014772 [Cucumis sativus])

HSP 1 Score: 88.6 bits (218), Expect = 5.9e-14
Identity = 46/112 (41.07%), Postives = 73/112 (65.18%), Query Frame = 0


Query: 68  LIKACPHNSIPKCILIEDFYGGLNKEMKHSANAAFQRGMLKQSYNQIKATLDSLSKNQEE 127
           ++K C H++I  C++IE FY GL+++ +   +A F  GML+ S N IK TLD++  N +E
Sbjct: 1   MMKGCLHHNILGCVIIEQFYFGLSRDTQQFVDAVFIGGMLRLSCNHIKTTLDAMVSNSQE 60

Query: 128 WEDDDYGSHY----GRRQ--RNDEGMDRNGVVALPNQMTAMNNLLQSMVHTQ 174
           W D+++GSH      RR+  R ++G + N ++ L +Q+T MN LLQSM  +Q
Sbjct: 61  WRDNEFGSHNESKGNRREKGRTNKGSNGNAMITLQSQVTEMNKLLQSMALSQ 112

[Close]

BLAST of PI0006220 vs. NCBI nr
Match: KAA0061983.1 (uncharacterized protein E6C27_scaffold89G002850 [Cucumis melo var. makuwa])

HSP 1 Score: 84.3 bits (207), Expect = 1.1e-12
Identity = 50/160 (31.25%), Postives = 74/160 (46.25%), Query Frame = 0


Query: 24  IAHDVTKPIREYASASLYDFNIGITYSEFRDNTECQMK---------------------- 83
           +AH++ +PIR YA  SLY+FN GI Y EF +N   + K                      
Sbjct: 18  LAHNLHRPIRSYALPSLYEFNPGIAYPEFGENAHYESKDDAKRWANSMEHGEVTTWEDLI 77

Query: 84  ----------------------------------LGRYKRLIKACPHNSIPKCILIEDFY 128
                                                +KR++KAC H+ I K +L+E FY
Sbjct: 78  EKFMKKFFPTIKIAKRRQDLILFKQRDRKNLHDAWSIFKRMVKACLHHGITKYVLMEGFY 137

The following BLAST results are available for this feature:

BLAST of PI0006220 vs.


Match Name	E-value	Identity	Description

BLAST of PI0006220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6F9	2.0e-23	51.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G307410 PE=4 SV=1	[more]
A0A5D3CC26	5.0e-19	47.41	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TUE1	2.2e-14	45.19	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0L0Y4	2.9e-14	41.07	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G131150 PE=4 SV=1	[more]
A0A5A7V1F3	5.4e-13	31.25	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of PI0006220 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44484.1	4.1e-23	51.24	hypothetical protein Csa_015918 [Cucumis sativus]	[more]
KAA0048713.1	1.0e-18	47.41	hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa] >TYK07916...	[more]
KAA0046468.1	4.5e-14	45.19	hypothetical protein E6C27_scaffold543G00470 [Cucumis melo var. makuwa] >TYJ9774...	[more]
KGN53801.1	5.9e-14	41.07	hypothetical protein Csa_014772 [Cucumis sativus]	[more]
KAA0061983.1	1.1e-12	31.25	uncharacterized protein E6C27_scaffold89G002850 [Cucumis melo var. makuwa]	[more]

BLAST of PI0006220 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 111..131
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..148
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0006220.1	PI0006220.1	mRNA