PI0006212 (gene) Melon (PI 482460) v1

Overview


Name	PI0006212
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr10: 19412304 .. 19412717 (-)
RNA-Seq Expression	PI0006212
Synteny	PI0006212

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGGCCAAACCCAACACTTGGTTATGAGTTTTTTCCTTGTCTCTTTACTGATCATCTTCTTCAATACTGTCTCTGCATCAAGTACACAACCCTCAAACTTTGTTTAATGAAATTACTTCCTTTAAAATTCTTACTTCATCTTAATAAGTTTCTATATTCCTTATCCACAGGGGCTACAGTTATGATCCATCTTGGTCAAGACTTTCCAGCTTCCCAAGCTGCAAACCAGGTATATAAATATATGCATGATTGATTTATAGAAATGATTTAGGCCTGATCGATCTCTTCAATGGCAGAAGAATCAGCCACTGCAGAATTTGTGGAATGGCAGAATGGATTTGCAGTTCAATGACTATCAAATATTTGGAGCTAATCCTCGCCATACTCCAAAGCCAACAGGGAAAGTTTGA

mRNA sequence

ATGGCAGGCCAAACCCAACACTTGGTTATGAGTTTTTTCCTTGTCTCTTTACTGATCATCTTCTTCAATACTGTCTCTGCATCAAGGGCTACAGTTATGATCCATCTTGGTCAAGACTTTCCAGCTTCCCAAGCTGCAAACCAGAAGAATCAGCCACTGCAGAATTTGTGGAATGGCAGAATGGATTTGCAGTTCAATGACTATCAAATATTTGGAGCTAATCCTCGCCATACTCCAAAGCCAACAGGGAAAGTTTGA

Coding sequence (CDS)

ATGGCAGGCCAAACCCAACACTTGGTTATGAGTTTTTTCCTTGTCTCTTTACTGATCATCTTCTTCAATACTGTCTCTGCATCAAGGGCTACAGTTATGATCCATCTTGGTCAAGACTTTCCAGCTTCCCAAGCTGCAAACCAGAAGAATCAGCCACTGCAGAATTTGTGGAATGGCAGAATGGATTTGCAGTTCAATGACTATCAAATATTTGGAGCTAATCCTCGCCATACTCCAAAGCCAACAGGGAAAGTTTGA

Protein sequence

MAGQTQHLVMSFFLVSLLIIFFNTVSASRATVMIHLGQDFPASQAANQKNQPLQNLWNGRMDLQFNDYQIFGANPRHTPKPTGKV

Homology

[Close]

BLAST of PI0006212 vs. ExPASy TrEMBL
Match: A0A0A0KQN6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G605220 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.4e-38
Identity = 82/85 (96.47%), Postives = 83/85 (97.65%), Query Frame = 0


Query: 1  MAGQTQHLVMSFFLVSLLIIFFNTVSASRATVMIHLGQDFPASQAANQKNQPLQNLWNGR 60
          MA QTQHLVMSFFLVSLLIIFFNTVSASRATVMIHLGQDFPASQA NQKNQPL+NLWNGR
Sbjct: 1  MADQTQHLVMSFFLVSLLIIFFNTVSASRATVMIHLGQDFPASQATNQKNQPLENLWNGR 60

Query: 61 MDLQFNDYQIFGANPRHTPKPTGKV 86
          MDLQFNDYQIFGANPRHTPKPTGKV
Sbjct: 61 MDLQFNDYQIFGANPRHTPKPTGKV 85

[Close]

BLAST of PI0006212 vs. ExPASy TrEMBL
Match: A0A5A7SX31 (Putative lipoprotein yfhM OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1932G00360 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.7e-36
Identity = 78/85 (91.76%), Postives = 81/85 (95.29%), Query Frame = 0


Query: 1  MAGQTQHLVMSFFLVSLLIIFFNTVSASRATVMIHLGQDFPASQAANQKNQPLQNLWNGR 60
          MA QTQHLVMSF L+SLLIIFFNTVSASRAT M+HLGQDFPASQAANQKNQP +NLWNGR
Sbjct: 1  MADQTQHLVMSFLLLSLLIIFFNTVSASRATFMVHLGQDFPASQAANQKNQPPENLWNGR 60

Query: 61 MDLQFNDYQIFGANPRHTPKPTGKV 86
          MDLQFNDYQIFGANPRHTPKPTGKV
Sbjct: 61 MDLQFNDYQIFGANPRHTPKPTGKV 85

[Close]

BLAST of PI0006212 vs. ExPASy TrEMBL
Match: A0A1S3BEE6 (uncharacterized protein LOC103489129 OS=Cucumis melo OX=3656 GN=LOC103489129 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.7e-36
Identity = 78/85 (91.76%), Postives = 81/85 (95.29%), Query Frame = 0


Query: 1   MAGQTQHLVMSFFLVSLLIIFFNTVSASRATVMIHLGQDFPASQAANQKNQPLQNLWNGR 60
           MA QTQHLVMSF L+SLLIIFFNTVSASRAT M+HLGQDFPASQAANQKNQP +NLWNGR
Sbjct: 28  MADQTQHLVMSFLLLSLLIIFFNTVSASRATFMVHLGQDFPASQAANQKNQPPENLWNGR 87

Query: 61  MDLQFNDYQIFGANPRHTPKPTGKV 86
           MDLQFNDYQIFGANPRHTPKPTGKV
Sbjct: 88  MDLQFNDYQIFGANPRHTPKPTGKV 112

[Close]

BLAST of PI0006212 vs. ExPASy TrEMBL
Match: B9S8Y1 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0836660 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.3e-04
Identity = 30/74 (40.54%), Postives = 40/74 (54.05%), Query Frame = 0


Query: 8  LVMSFFLVSLLIIFFNTVSASRATVMIHLGQDFPASQAANQKNQPLQNLWNGRMDLQFND 67
          LV+   + S L+   N  S SRA  + H GQ  P+S   N   Q ++ L NGR D++ ND
Sbjct: 10 LVIILLVFSQLLFSLNAASTSRANELFHGGQHVPSSSFENTYLQRMRKLGNGRKDIEVND 69

Query: 68 YQIFGANPRHTPKP 82
          Y   G N  HTP+P
Sbjct: 70 YSESGPNKSHTPEP 83

[Close]

BLAST of PI0006212 vs. NCBI nr
Match: KGN51928.1 (hypothetical protein Csa_009059 [Cucumis sativus])

HSP 1 Score: 168.3 bits (425), Expect = 2.8e-38
Identity = 82/85 (96.47%), Postives = 83/85 (97.65%), Query Frame = 0


Query: 1  MAGQTQHLVMSFFLVSLLIIFFNTVSASRATVMIHLGQDFPASQAANQKNQPLQNLWNGR 60
          MA QTQHLVMSFFLVSLLIIFFNTVSASRATVMIHLGQDFPASQA NQKNQPL+NLWNGR
Sbjct: 1  MADQTQHLVMSFFLVSLLIIFFNTVSASRATVMIHLGQDFPASQATNQKNQPLENLWNGR 60

Query: 61 MDLQFNDYQIFGANPRHTPKPTGKV 86
          MDLQFNDYQIFGANPRHTPKPTGKV
Sbjct: 61 MDLQFNDYQIFGANPRHTPKPTGKV 85

[Close]

BLAST of PI0006212 vs. NCBI nr
Match: KAA0034426.1 (putative lipoprotein yfhM [Cucumis melo var. makuwa] >TYK17708.1 putative lipoprotein yfhM [Cucumis melo var. makuwa])

HSP 1 Score: 161.4 bits (407), Expect = 3.5e-36
Identity = 78/85 (91.76%), Postives = 81/85 (95.29%), Query Frame = 0


Query: 1  MAGQTQHLVMSFFLVSLLIIFFNTVSASRATVMIHLGQDFPASQAANQKNQPLQNLWNGR 60
          MA QTQHLVMSF L+SLLIIFFNTVSASRAT M+HLGQDFPASQAANQKNQP +NLWNGR
Sbjct: 1  MADQTQHLVMSFLLLSLLIIFFNTVSASRATFMVHLGQDFPASQAANQKNQPPENLWNGR 60

Query: 61 MDLQFNDYQIFGANPRHTPKPTGKV 86
          MDLQFNDYQIFGANPRHTPKPTGKV
Sbjct: 61 MDLQFNDYQIFGANPRHTPKPTGKV 85

[Close]

BLAST of PI0006212 vs. NCBI nr
Match: XP_008446367.1 (PREDICTED: uncharacterized protein LOC103489129 [Cucumis melo])

HSP 1 Score: 161.4 bits (407), Expect = 3.5e-36
Identity = 78/85 (91.76%), Postives = 81/85 (95.29%), Query Frame = 0


Query: 1   MAGQTQHLVMSFFLVSLLIIFFNTVSASRATVMIHLGQDFPASQAANQKNQPLQNLWNGR 60
           MA QTQHLVMSF L+SLLIIFFNTVSASRAT M+HLGQDFPASQAANQKNQP +NLWNGR
Sbjct: 28  MADQTQHLVMSFLLLSLLIIFFNTVSASRATFMVHLGQDFPASQAANQKNQPPENLWNGR 87

Query: 61  MDLQFNDYQIFGANPRHTPKPTGKV 86
           MDLQFNDYQIFGANPRHTPKPTGKV
Sbjct: 88  MDLQFNDYQIFGANPRHTPKPTGKV 112

[Close]

BLAST of PI0006212 vs. NCBI nr
Match: KAG7032221.1 (hypothetical protein SDJN02_06264, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 105.1 bits (261), Expect = 2.9e-19
Identity = 55/85 (64.71%), Postives = 63/85 (74.12%), Query Frame = 0


Query: 1  MAGQTQHLVMSFFLVSLLIIFFNTVSASRATVMIHLGQDFPASQAANQKNQPLQNLWNGR 60
          MAGQTQH +M   L+SLL+      SAS A +MIHLGQDF ASQAA+Q  QPLQ L N R
Sbjct: 1  MAGQTQHFLMVLILLSLLL------SASGAAIMIHLGQDFSASQAAHQTKQPLQKLLNDR 60

Query: 61 MDLQFNDYQIFGANPRHTPKPTGKV 86
          MDLQ+NDY +  AN RHTPKPTG+V
Sbjct: 61 MDLQYNDYPVSEANHRHTPKPTGRV 79

[Close]

BLAST of PI0006212 vs. NCBI nr
Match: KAG6601439.1 (hypothetical protein SDJN03_06672, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 93.2 bits (230), Expect = 1.2e-15
Identity = 46/69 (66.67%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 17 LLIIFFNTVSASRATVMIHLGQDFPASQAANQKNQPLQNLWNGRMDLQFNDYQIFGANPR 76
          +LI+    +SAS A +MIHLGQDF ASQAA+QK QPLQ L N RMDLQ+NDY +  AN R
Sbjct: 2  VLILLSLLLSASGAAIMIHLGQDFSASQAAHQKKQPLQKLLNDRMDLQYNDYPVSEANHR 61

Query: 77 HTPKPTGKV 86
          HTPKPTG+V
Sbjct: 62 HTPKPTGRV 70

The following BLAST results are available for this feature:

BLAST of PI0006212 vs.


Match Name	E-value	Identity	Description

BLAST of PI0006212 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQN6	1.4e-38	96.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G605220 PE=4 SV=1	[more]
A0A5A7SX31	1.7e-36	91.76	Putative lipoprotein yfhM OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3BEE6	1.7e-36	91.76	uncharacterized protein LOC103489129 OS=Cucumis melo OX=3656 GN=LOC103489129 PE=...	[more]
B9S8Y1	1.3e-04	40.54	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0836660 PE=4 SV=1	[more]

BLAST of PI0006212 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN51928.1	2.8e-38	96.47	hypothetical protein Csa_009059 [Cucumis sativus]	[more]
KAA0034426.1	3.5e-36	91.76	putative lipoprotein yfhM [Cucumis melo var. makuwa] >TYK17708.1 putative lipopr...	[more]
XP_008446367.1	3.5e-36	91.76	PREDICTED: uncharacterized protein LOC103489129 [Cucumis melo]	[more]
KAG7032221.1	2.9e-19	64.71	hypothetical protein SDJN02_06264, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6601439.1	1.2e-15	66.67	hypothetical protein SDJN03_06672, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of PI0006212 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0006212.1	PI0006212.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane