PI0006186 (gene) Melon (PI 482460) v1

Overview


Name	PI0006186
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr01: 22616091 .. 22616383 (+)
RNA-Seq Expression	PI0006186
Synteny	PI0006186

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTTTTCACCCTTTAAAATCCACCCACAAATCCCCAATTCTTCTTCATTACGCTTCCGATTCTCCTTCTCCGGCAAAGCTAAGAGATTACCATGCGCGGCGGCGGCAAGAATTCACGGTTCCTTTTTGCCCTAATGGCAGGGCTTCTGCTTCTGGTTGCGATCGCGACGGTGATGGCGAGGCCGATTCATGACTCCACCGGTCCATTGCATAGACCGCTAGTTCCGCCGTCTGGCCGGAACCCTTGCTCTCATGTTCCGTTGCCTGGTGATGGAAGGCATTGCCTTTGA

mRNA sequence

ATGGCGTTTTCACCCTTTAAAATCCACCCACAAATCCCCAATTCTTCTTCATTACGCTTCCGATTCTCCTTCTCCGGCAAAAATTCACGGTTCCTTTTTGCCCTAATGGCAGGGCTTCTGCTTCTGGTTGCGATCGCGACGGTGATGGCGAGGCCGATTCATGACTCCACCGGTCCATTGCATAGACCGCTAGTTCCGCCGTCTGGCCGGAACCCTTGCTCTCATGTTCCGTTGCCTGGTGATGGAAGGCATTGCCTTTGA

Coding sequence (CDS)

ATGGCGTTTTCACCCTTTAAAATCCACCCACAAATCCCCAATTCTTCTTCATTACGCTTCCGATTCTCCTTCTCCGGCAAAAATTCACGGTTCCTTTTTGCCCTAATGGCAGGGCTTCTGCTTCTGGTTGCGATCGCGACGGTGATGGCGAGGCCGATTCATGACTCCACCGGTCCATTGCATAGACCGCTAGTTCCGCCGTCTGGCCGGAACCCTTGCTCTCATGTTCCGTTGCCTGGTGATGGAAGGCATTGCCTTTGA

Protein sequence

MAFSPFKIHPQIPNSSSLRFRFSFSGKNSRFLFALMAGLLLLVAIATVMARPIHDSTGPLHRPLVPPSGRNPCSHVPLPGDGRHCL

Homology

[Close]

BLAST of PI0006186 vs. ExPASy TrEMBL
Match: A0A0A0K702 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G372930 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.5e-24
Identity = 64/96 (66.67%), Postives = 67/96 (69.79%), Query Frame = 0


Query: 1  MAFSPFKIHPQIPNSSSLRFRFSF----------SGKNSRFLFALMAGLLLLVAIATVMA 60
          MAF PFK     P  SS R  FSF           GKNSR +FAL+AGLLLLV IAT MA
Sbjct: 1  MAFHPFKSSHASPFPSSSRSPFSFFGKAKRFNMRRGKNSRIVFALIAGLLLLVGIATAMA 60

Query: 61 RPIHDSTGPLHRPLVPPSGRNPCSHVPLPGDGRHCL 87
          RPIHDS  PL RP +PPSGRNPCSHVPLPGDGRHCL
Sbjct: 61 RPIHDSAAPLRRPPIPPSGRNPCSHVPLPGDGRHCL 96

[Close]

BLAST of PI0006186 vs. NCBI nr
Match: KGN44699.1 (hypothetical protein Csa_016711 [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 5.2e-24
Identity = 64/96 (66.67%), Postives = 67/96 (69.79%), Query Frame = 0


Query: 1  MAFSPFKIHPQIPNSSSLRFRFSF----------SGKNSRFLFALMAGLLLLVAIATVMA 60
          MAF PFK     P  SS R  FSF           GKNSR +FAL+AGLLLLV IAT MA
Sbjct: 1  MAFHPFKSSHASPFPSSSRSPFSFFGKAKRFNMRRGKNSRIVFALIAGLLLLVGIATAMA 60

Query: 61 RPIHDSTGPLHRPLVPPSGRNPCSHVPLPGDGRHCL 87
          RPIHDS  PL RP +PPSGRNPCSHVPLPGDGRHCL
Sbjct: 61 RPIHDSAAPLRRPPIPPSGRNPCSHVPLPGDGRHCL 96

[Close]

BLAST of PI0006186 vs. NCBI nr
Match: KAG6576035.1 (hypothetical protein SDJN03_26674, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 75.5 bits (184), Expect = 2.5e-10
Identity = 43/69 (62.32%), Postives = 47/69 (68.12%), Query Frame = 0


Query: 27  KNSRFLFALMAGLLLLVAI-----ATVMARPIHDSTG----PLHRPLVPPSGRNPCSHVP 86
           K S   FA+MA LLLL+AI     ATV ARPI DS+G    P +R  VPPSGRNPCSH  
Sbjct: 55  KKSGLKFAVMAVLLLLIAIEEAGVATVTARPIRDSSGEALRPQYRAPVPPSGRNPCSHFS 114

The following BLAST results are available for this feature:

BLAST of PI0006186 vs.


Match Name	E-value	Identity	Description

BLAST of PI0006186 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K702	2.5e-24	66.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G372930 PE=4 SV=1	[more]

BLAST of PI0006186 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44699.1	5.2e-24	66.67	hypothetical protein Csa_016711 [Cucumis sativus]	[more]
KAG6576035.1	2.5e-10	62.32	hypothetical protein SDJN03_26674, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of PI0006186 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0006186.1	PI0006186.1	mRNA