PI0006151 (gene) Melon (PI 482460) v1

Overview


Name	PI0006151
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Tropomyosin
Location	chr11: 6832312 .. 6832623 (-)
RNA-Seq Expression	PI0006151
Synteny	PI0006151

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTCCTCATCAAAGATTTGTTTCTGTATTCCCCGCCATAAAAATGGCCACAAAGCTGATGGAGGATCAGAGAAATCTACCAAATCTAAGCCTTCTCGTCGCAAATCTCGTCGAGGCTCAAAAGAAGGTAAGCCATTGTCTAGCAGTGATAGTAGTGGAAATGGAAACACAGGTGATGCAAGTGCAGCCGGTGCCACTGCCGTGGCTGCTGTTGCAGTCACGGCAGTGACCATGGATGCATTTGATGATGACGGTGGCAGTACCCATGTCCACGGTGGTGAGGGAGGCGGCGGGGGTGGTGGAGATTAG

mRNA sequence

ATGGAGTCCTCATCAAAGATTTGTTTCTGTATTCCCCGCCATAAAAATGGCCACAAAGCTGATGGAGGATCAGAGAAATCTACCAAATCTAAGCCTTCTCGTCGCAAATCTCGTCGAGGCTCAAAAGAAGGTAAGCCATTGTCTAGCAGTGATAGTAGTGGAAATGGAAACACAGGTGATGCAAGTGCAGCCGGTGCCACTGCCGTGGCTGCTGTTGCAGTCACGGCAGTGACCATGGATGCATTTGATGATGACGGTGGCAGTACCCATGTCCACGGTGGTGAGGGAGGCGGCGGGGGTGGTGGAGATTAG

Coding sequence (CDS)

ATGGAGTCCTCATCAAAGATTTGTTTCTGTATTCCCCGCCATAAAAATGGCCACAAAGCTGATGGAGGATCAGAGAAATCTACCAAATCTAAGCCTTCTCGTCGCAAATCTCGTCGAGGCTCAAAAGAAGGTAAGCCATTGTCTAGCAGTGATAGTAGTGGAAATGGAAACACAGGTGATGCAAGTGCAGCCGGTGCCACTGCCGTGGCTGCTGTTGCAGTCACGGCAGTGACCATGGATGCATTTGATGATGACGGTGGCAGTACCCATGTCCACGGTGGTGAGGGAGGCGGCGGGGGTGGTGGAGATTAG

Protein sequence

MESSSKICFCIPRHKNGHKADGGSEKSTKSKPSRRKSRRGSKEGKPLSSSDSSGNGNTGDASAAGATAVAAVAVTAVTMDAFDDDGGSTHVHGGEGGGGGGGD

Homology

[Close]

BLAST of PI0006151 vs. ExPASy TrEMBL
Match: A0A5D3CVK1 (Tropomyosin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00300 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.7e-36
Identity = 92/102 (90.20%), Postives = 94/102 (92.16%), Query Frame = 0


Query: 1   MESSSKICFCIPRHKNGHKADGGSEKSTKSKPSRRKSRRGSKEGKPLSSSDSSGNGNTGD 60
           MESSSKICFCIPRHKNGHKADGGSEKS+KSKPSRRKSRRGSKEGK  S SDSSGNGN+GD
Sbjct: 430 MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGSKEGKHSSGSDSSGNGNSGD 489

Query: 61  ASAAGATAVAAVAVTAVTMDAFDDDGGSTHVHGGEGGGGGGG 103
           A AA ATAVAAVAVTAVTMDA DDDGGSTHVHGGEGG GG G
Sbjct: 490 AGAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGGAG 531

[Close]

BLAST of PI0006151 vs. ExPASy TrEMBL
Match: A0A5A7V5U9 (Tropomyosin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G001080 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.7e-36
Identity = 92/102 (90.20%), Postives = 94/102 (92.16%), Query Frame = 0


Query: 1   MESSSKICFCIPRHKNGHKADGGSEKSTKSKPSRRKSRRGSKEGKPLSSSDSSGNGNTGD 60
           MESSSKICFCIPRHKNGHKADGGSEKS+KSKPSRRKSRRGSKEGK  S SDSSGNGN+GD
Sbjct: 460 MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGSKEGKHSSGSDSSGNGNSGD 519

Query: 61  ASAAGATAVAAVAVTAVTMDAFDDDGGSTHVHGGEGGGGGGG 103
           A AA ATAVAAVAVTAVTMDA DDDGGSTHVHGGEGG GG G
Sbjct: 520 AGAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGGAG 561

[Close]

BLAST of PI0006151 vs. ExPASy TrEMBL
Match: A0A0A0KFD0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G188150 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.1e-34
Identity = 90/103 (87.38%), Postives = 92/103 (89.32%), Query Frame = 0


Query: 1   MESSSKICFCIPRHKNGHKADGGSEKSTKSKPSRRKSRRGSKEGKPLSSSDSSGNGNTGD 60
           MESSSKICFCIPRHKNGHKADGGSEKS+KSKPSRRKS R SKEGK  SSSDSSGNGN G+
Sbjct: 1   MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGE 60

Query: 61  ASAAGATAVAAVAVTAVTMDAFDDDGGSTHVHGGEGGGGGGGD 104
             AA ATAVAAVAVTAVTMDA DDDGGSTHVHGGEGG G GGD
Sbjct: 61  ECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGAGGD 103

[Close]

BLAST of PI0006151 vs. ExPASy TrEMBL
Match: A0A6J1D515 (circumsporozoite protein-like OS=Momordica charantia OX=3673 GN=LOC111017006 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.0e-23
Identity = 78/106 (73.58%), Postives = 84/106 (79.25%), Query Frame = 0


Query: 4   SSKICFCIPRHKNGHKADGGSEKSTKSKPSRRKSRRGSKEGKPLSSSDSSGNGNTGDASA 63
           S+KICFCIPRHKNGHKA+GGSEKS+KSKPSRRKSRRG K GK  SSSDSSG+GNT   +A
Sbjct: 3   STKICFCIPRHKNGHKANGGSEKSSKSKPSRRKSRRGEKGGKHSSSSDSSGDGNTNTGAA 62

Query: 64  AGA---TAVAAVAV---TAVTMDAFDDDGGSTHVHGGEGGGGGGGD 104
           AG     AVAAV V   TA TMDA +DDGGS H HGG GG GGGGD
Sbjct: 63  AGGGSDAAVAAVVVMGTTAATMDAVEDDGGSAHGHGG-GGEGGGGD 107

[Close]

BLAST of PI0006151 vs. NCBI nr
Match: TYK15390.1 (tropomyosin [Cucumis melo var. makuwa])

HSP 1 Score: 161.0 bits (406), Expect = 5.5e-36
Identity = 92/102 (90.20%), Postives = 94/102 (92.16%), Query Frame = 0


Query: 1   MESSSKICFCIPRHKNGHKADGGSEKSTKSKPSRRKSRRGSKEGKPLSSSDSSGNGNTGD 60
           MESSSKICFCIPRHKNGHKADGGSEKS+KSKPSRRKSRRGSKEGK  S SDSSGNGN+GD
Sbjct: 430 MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGSKEGKHSSGSDSSGNGNSGD 489

Query: 61  ASAAGATAVAAVAVTAVTMDAFDDDGGSTHVHGGEGGGGGGG 103
           A AA ATAVAAVAVTAVTMDA DDDGGSTHVHGGEGG GG G
Sbjct: 490 AGAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGGAG 531

[Close]

BLAST of PI0006151 vs. NCBI nr
Match: KAA0061866.1 (tropomyosin [Cucumis melo var. makuwa])

HSP 1 Score: 161.0 bits (406), Expect = 5.5e-36
Identity = 92/102 (90.20%), Postives = 94/102 (92.16%), Query Frame = 0


Query: 1   MESSSKICFCIPRHKNGHKADGGSEKSTKSKPSRRKSRRGSKEGKPLSSSDSSGNGNTGD 60
           MESSSKICFCIPRHKNGHKADGGSEKS+KSKPSRRKSRRGSKEGK  S SDSSGNGN+GD
Sbjct: 460 MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGSKEGKHSSGSDSSGNGNSGD 519

Query: 61  ASAAGATAVAAVAVTAVTMDAFDDDGGSTHVHGGEGGGGGGG 103
           A AA ATAVAAVAVTAVTMDA DDDGGSTHVHGGEGG GG G
Sbjct: 520 AGAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGGAG 561

[Close]

BLAST of PI0006151 vs. NCBI nr
Match: KAE8645885.1 (hypothetical protein Csa_017706 [Cucumis sativus] >KGN47122.1 hypothetical protein Csa_020675 [Cucumis sativus])

HSP 1 Score: 155.6 bits (392), Expect = 2.3e-34
Identity = 90/103 (87.38%), Postives = 92/103 (89.32%), Query Frame = 0


Query: 1   MESSSKICFCIPRHKNGHKADGGSEKSTKSKPSRRKSRRGSKEGKPLSSSDSSGNGNTGD 60
           MESSSKICFCIPRHKNGHKADGGSEKS+KSKPSRRKS R SKEGK  SSSDSSGNGN G+
Sbjct: 1   MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGE 60

Query: 61  ASAAGATAVAAVAVTAVTMDAFDDDGGSTHVHGGEGGGGGGGD 104
             AA ATAVAAVAVTAVTMDA DDDGGSTHVHGGEGG G GGD
Sbjct: 61  ECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGAGGD 103

[Close]

BLAST of PI0006151 vs. NCBI nr
Match: KAG7010529.1 (hypothetical protein SDJN02_27323, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 143.7 bits (361), Expect = 9.1e-31
Identity = 89/102 (87.25%), Postives = 92/102 (90.20%), Query Frame = 0


Query: 4   SSKICFCIPRHKNGHKADGGSEKSTKSKPSRRKSRRGSKEGKPLSSSDSSGNGNTGDASA 63
           SSKICFCIPRHKN HK DGGSEKS+KSKPSRRKS  G+KEGK  SSSDSSGNGNTGDASA
Sbjct: 59  SSKICFCIPRHKNSHKVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSSGNGNTGDASA 118

Query: 64  AG-ATAVAAVAVTAVTMDAFD-DDGGSTHVHGGEGGGGGGGD 104
           AG A AVAA+AVTAVTMDA D DDGGSTHVHGGEGGGGGGGD
Sbjct: 119 AGSAAAVAAIAVTAVTMDAVDEDDGGSTHVHGGEGGGGGGGD 158

[Close]

BLAST of PI0006151 vs. NCBI nr
Match: KAG6570682.1 (hypothetical protein SDJN03_29597, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 140.6 bits (353), Expect = 7.7e-30
Identity = 88/102 (86.27%), Postives = 91/102 (89.22%), Query Frame = 0


Query: 4   SSKICFCIPRHKNGHKADGGSEKSTKSKPSRRKSRRGSKEGKPLSSSDSSGNGNTGDASA 63
           SSKICFCIPRHKN HK DGGSEKS+KSKPSRRKS  G+KEGK  SSSDSSGNGNTG ASA
Sbjct: 127 SSKICFCIPRHKNSHKVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSSGNGNTGAASA 186

Query: 64  AG-ATAVAAVAVTAVTMDAFD-DDGGSTHVHGGEGGGGGGGD 104
           AG A AVAA+AVTAVTMDA D DDGGSTHVHGGEGGGGGGGD
Sbjct: 187 AGSAAAVAAIAVTAVTMDAVDEDDGGSTHVHGGEGGGGGGGD 226

The following BLAST results are available for this feature:

BLAST of PI0006151 vs.


Match Name	E-value	Identity	Description

BLAST of PI0006151 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CVK1	2.7e-36	90.20	Tropomyosin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00300 PE...	[more]
A0A5A7V5U9	2.7e-36	90.20	Tropomyosin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G001080 PE...	[more]
A0A0A0KFD0	1.1e-34	87.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G188150 PE=4 SV=1	[more]
A0A6J1D515	2.0e-23	73.58	circumsporozoite protein-like OS=Momordica charantia OX=3673 GN=LOC111017006 PE=...	[more]

BLAST of PI0006151 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK15390.1	5.5e-36	90.20	tropomyosin [Cucumis melo var. makuwa]	[more]
KAA0061866.1	5.5e-36	90.20	tropomyosin [Cucumis melo var. makuwa]	[more]
KAE8645885.1	2.3e-34	87.38	hypothetical protein Csa_017706 [Cucumis sativus] >KGN47122.1 hypothetical prote...	[more]
KAG7010529.1	9.1e-31	87.25	hypothetical protein SDJN02_27323, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6570682.1	7.7e-30	86.27	hypothetical protein SDJN03_29597, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of PI0006151 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0006151.1	PI0006151.1	mRNA