Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGATTATAGGCCTATTTCGTGTTGTAATGTGGTTTACAAGTGCATTTCTAAGATTTTGGCGGATAGGCTTCATGTGTGGCTTCCTTTTTTTATCGGTGGTAATCAGTCGGCCTTTGTAGTTGGGAGGAGTATTGTTGATAACATTCTGCTTTGTCAGGAGATGGTGGGGATTATCATGGTTCTTCGGGTTCGCCTAGGTGTGCAATGAACGTGGATCTTCAGAAGGCTTATGATTCGGTGAATTGGGATTTTCTGTTCAGCTTGTTGCTTGCTATTGGCACTCCCCTGCATTTTGTGAGTTGGATTAGGGCGTGTGTTACTTCTCCTATGTTCTCTATCATGGTTAATGGTTCTGTCGAGGAGTTTTATCATGGTAGAAAAGGGTTGCGGCAGGGTGACCCCTTATCCCCCTTTTTGTTTGTGATGGTGATGGAGGTGCTTACTCATCTTTTGAATAGGCCCTCTCTAGATTTTAAGTATCATCATCTTTGTGAGAAGGTTTGTTTGACATCTTATGATTTTTTGTTATGCTGACACCGCTTCCATTGGCTTTGTGCGCGAGTCGGGGTTAATTGCTAATTTGGAGAAGAGTTCTATGTGTGTGGCAGGGGTTGACATTGAGGCTACTACTGTGTTGGCTAATAGTATGGGGTTTGCGCTGGGTACTTTGCCTGTTCGTTACCTGGGTGTTCCCTTACTCTCTGGTCGTATGCGTTCTTCGGATTGTGCTCCGCTCATCCAGCGTATTACTAGTCGGATTCAGTCTTAG
mRNA sequence
ATGGAGGATTATAGGCCTATTTCGTGTTGTAATGTGGTTTACAAGTGCATTTCTAAGATTTTGGCGGATAGGCTTCATGTGTGGCTTCCTTTTTTTATCGGTGGTAATCAGTCGGCCTTTGTAGTTGGGAGGAGTATTGTTGATAACATTCTGCTTTGTCAGGAGATGTCGGGGTTAATTGCTAATTTGGAGAAGAGTTCTATGTGTGTGGCAGGGGTTGACATTGAGGCTACTACTGTGTTGGCTAATAGTATGGGGTTTGCGCTGGGTACTTTGCCTGTTCGTTACCTGGGTGTTCCCTTACTCTCTGGTCGTATGCGTTCTTCGGATTGTGCTCCGCTCATCCAGCGTATTACTAGTCGGATTCAGTCTTAG
Coding sequence (CDS)
ATGGAGGATTATAGGCCTATTTCGTGTTGTAATGTGGTTTACAAGTGCATTTCTAAGATTTTGGCGGATAGGCTTCATGTGTGGCTTCCTTTTTTTATCGGTGGTAATCAGTCGGCCTTTGTAGTTGGGAGGAGTATTGTTGATAACATTCTGCTTTGTCAGGAGATGTCGGGGTTAATTGCTAATTTGGAGAAGAGTTCTATGTGTGTGGCAGGGGTTGACATTGAGGCTACTACTGTGTTGGCTAATAGTATGGGGTTTGCGCTGGGTACTTTGCCTGTTCGTTACCTGGGTGTTCCCTTACTCTCTGGTCGTATGCGTTCTTCGGATTGTGCTCCGCTCATCCAGCGTATTACTAGTCGGATTCAGTCTTAG
Protein sequence
MEDYRPISCCNVVYKCISKILADRLHVWLPFFIGGNQSAFVVGRSIVDNILLCQEMSGLIANLEKSSMCVAGVDIEATTVLANSMGFALGTLPVRYLGVPLLSGRMRSSDCAPLIQRITSRIQS
Homology
BLAST of PI0006148 vs. ExPASy TrEMBL
Match:
A0A5A7V4C1 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G00110 PE=4 SV=1)
HSP 1 Score: 170.2 bits (430), Expect = 5.3e-39
Identity = 94/170 (55.29%), Postives = 108/170 (63.53%), Query Frame = 0
Query: 1 MEDYRPISCCNVVYKCISKILADRLHVWLPFFIGGNQSAFVVGRSIVDNILLCQEM---- 60
ME++RPISCCNV+YKCISKILADR+ VWLP FI NQSAF+ GRSI+DNILLCQE+
Sbjct: 197 MEEFRPISCCNVIYKCISKILADRICVWLPSFISSNQSAFMPGRSIIDNILLCQELVGGY 256
Query: 61 ------------------------------------------SGLIANLEKSSMCVAGVD 120
SGL ANL KSS+ VAGV
Sbjct: 257 HLNFGKPRYTLKVDLQKAYDSVNWDFLFGLLIAIGTPLKFVTSGLFANLRKSSIFVAGVS 316
Query: 121 IEATTVLANSMGFALGTLPVRYLGVPLLSGRMRSSDCAPLIQRITSRIQS 125
EA + LA SMGF LG LPVRYLG+PLL+GR+RS+DCAPLIQRITS I+S
Sbjct: 317 HEAASHLAASMGFGLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSWIRS 366
BLAST of PI0006148 vs. ExPASy TrEMBL
Match:
A0A1S4E258 (uncharacterized protein LOC103496880 OS=Cucumis melo OX=3656 GN=LOC103496880 PE=4 SV=1)
HSP 1 Score: 162.5 bits (410), Expect = 1.1e-36
Identity = 92/166 (55.42%), Postives = 106/166 (63.86%), Query Frame = 0
Query: 1 MEDYRPISCCNVVYKCISKILADRLHVWLPFFIGGNQSAFVVGRSIVDNILLCQEMSG-- 60
ME++RPISCCNV+YKCISKILADR+ VWLP FI NQSAF+ GRSI+DNILLCQE+ G
Sbjct: 197 MEEFRPISCCNVIYKCISKILADRICVWLPSFISSNQSAFMPGRSIIDNILLCQELVGGY 256
Query: 61 ------------------------------LIA----------NLEKSSMCVAGVDIEAT 120
LIA KSS+ VAGV EA
Sbjct: 257 HLNFGKPRYTLKVDLQKAYDSVNWDFLFGLLIAIGTPLKFERCKARKSSIFVAGVSHEAA 316
Query: 121 TVLANSMGFALGTLPVRYLGVPLLSGRMRSSDCAPLIQRITSRIQS 125
+ LA SMGF LG LPVRYLG+PLL+GR+RS+DCAPLIQRITS I+S
Sbjct: 317 SHLAASMGFGLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSWIRS 362
BLAST of PI0006148 vs. ExPASy TrEMBL
Match:
A0A1S3BSI8 (uncharacterized protein LOC103493225 OS=Cucumis melo OX=3656 GN=LOC103493225 PE=4 SV=1)
HSP 1 Score: 148.3 bits (373), Expect = 2.1e-32
Identity = 89/212 (41.98%), Postives = 106/212 (50.00%), Query Frame = 0
Query: 1 MEDYRPISCCNVVYKCISKILADRLHVWLPFFIGGNQSAFVVGRSIVDNILLCQ------ 60
+ED+RPISCCNV+YKCISKILADRL VWLP FI NQSAF++GRSI++NILLCQ
Sbjct: 399 LEDFRPISCCNVLYKCISKILADRLRVWLPSFISSNQSAFILGRSIIENILLCQELVGGY 458
Query: 61 ------------------------------------------------------------ 120
Sbjct: 459 HLNSGKPRCTLKVDLQKAYDSVNWDFLFGLQISISTPLKKGVRQGDPLSLFLFVMVMEVL 518
Query: 121 ----------------------EMSGLIANLEKSSMCVAGVDIEATTVLANSMGFALGTL 125
E+SGL AN KSS+ +AGV+ E + LA MGF G L
Sbjct: 519 SRMLNKIPQSFQFHHRCEKRFGELSGLFANPRKSSIFIAGVNNENASRLAACMGFVRGNL 578
BLAST of PI0006148 vs. ExPASy TrEMBL
Match:
A0A5A7V5J2 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00210 PE=4 SV=1)
HSP 1 Score: 145.2 bits (365), Expect = 1.8e-31
Identity = 91/201 (45.27%), Postives = 107/201 (53.23%), Query Frame = 0
Query: 1 MEDYRPISCCNVVYKCISKILADRLHVWLPFFIGGNQSAFVVGRSIVDNILLCQEM---- 60
ME++RPISCCNV+YKCISKILADRL VWLP FIG NQSAF+ GRSI+DNILLCQE+
Sbjct: 753 MEEFRPISCCNVIYKCISKILADRLRVWLPSFIGSNQSAFIPGRSIIDNILLCQELVEGY 812
Query: 61 ---SG-----LIANLEKS------------------------------------------ 120
SG L +L+K+
Sbjct: 813 HLNSGKPRCTLKVDLQKAYDSVNWDFLKGVRQGDPLSPFLFVMVMEVLSRMLNKIPQSFK 872
Query: 121 --------------------SMCVA---GVDIEATTVLANSMGFALGTLPVRYLGVPLLS 125
C A + EA + LA SMGF LG LPVRYLG+PLL+
Sbjct: 873 FHHRCEKVKLTHLTFADDLMIFCAADEPSLSNEAASHLAASMGFVLGNLPVRYLGLPLLT 932
BLAST of PI0006148 vs. ExPASy TrEMBL
Match:
A0A5D3DSA8 (Putative non-LTR retroelement reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G002870 PE=4 SV=1)
HSP 1 Score: 141.0 bits (354), Expect = 3.4e-30
Identity = 83/179 (46.37%), Postives = 98/179 (54.75%), Query Frame = 0
Query: 1 MEDYRPISCCNVVYKCISKILADRLHVWLPFFIGGNQSAFVVGRSIVDNILLCQEMSGLI 60
MED+RPISCCNV+YKCISKILADRL VWLP FI NQSAF+ GRSI++NILLCQE+ GL+
Sbjct: 237 MEDFRPISCCNVLYKCISKILADRLRVWLPSFISSNQSAFIPGRSIIENILLCQELFGLL 296
Query: 61 ANL-------------------------------------------EKSSM--------- 120
+ EK +
Sbjct: 297 IAIGTPLKKGVRQGDPLSPFLFVMMMEVLSCMLNKIPQSFLFHHRCEKVKLNHLTFADDL 356
Query: 121 ---CVAGVDIEATTVLANSMGFALGTLPVRYLGVPLLSGRMRSSDCAPLIQRITSRIQS 125
C A ++ + LG LPVRYLG+PLLSGR+RSSDCAPLIQRITSRI+S
Sbjct: 357 MIFCAADESSLRLLLIWLLVWVVLGNLPVRYLGLPLLSGRLRSSDCAPLIQRITSRIRS 415
BLAST of PI0006148 vs. NCBI nr
Match:
KAA0060725.1 (uncharacterized protein E6C27_scaffold72G00120 [Cucumis melo var. makuwa] >TYK01467.1 uncharacterized protein E5676_scaffold451G00110 [Cucumis melo var. makuwa])
HSP 1 Score: 170.2 bits (430), Expect = 1.1e-38
Identity = 94/170 (55.29%), Postives = 108/170 (63.53%), Query Frame = 0
Query: 1 MEDYRPISCCNVVYKCISKILADRLHVWLPFFIGGNQSAFVVGRSIVDNILLCQEM---- 60
ME++RPISCCNV+YKCISKILADR+ VWLP FI NQSAF+ GRSI+DNILLCQE+
Sbjct: 197 MEEFRPISCCNVIYKCISKILADRICVWLPSFISSNQSAFMPGRSIIDNILLCQELVGGY 256
Query: 61 ------------------------------------------SGLIANLEKSSMCVAGVD 120
SGL ANL KSS+ VAGV
Sbjct: 257 HLNFGKPRYTLKVDLQKAYDSVNWDFLFGLLIAIGTPLKFVTSGLFANLRKSSIFVAGVS 316
Query: 121 IEATTVLANSMGFALGTLPVRYLGVPLLSGRMRSSDCAPLIQRITSRIQS 125
EA + LA SMGF LG LPVRYLG+PLL+GR+RS+DCAPLIQRITS I+S
Sbjct: 317 HEAASHLAASMGFGLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSWIRS 366
BLAST of PI0006148 vs. NCBI nr
Match:
XP_016902060.1 (PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo])
HSP 1 Score: 162.5 bits (410), Expect = 2.3e-36
Identity = 92/166 (55.42%), Postives = 106/166 (63.86%), Query Frame = 0
Query: 1 MEDYRPISCCNVVYKCISKILADRLHVWLPFFIGGNQSAFVVGRSIVDNILLCQEMSG-- 60
ME++RPISCCNV+YKCISKILADR+ VWLP FI NQSAF+ GRSI+DNILLCQE+ G
Sbjct: 197 MEEFRPISCCNVIYKCISKILADRICVWLPSFISSNQSAFMPGRSIIDNILLCQELVGGY 256
Query: 61 ------------------------------LIA----------NLEKSSMCVAGVDIEAT 120
LIA KSS+ VAGV EA
Sbjct: 257 HLNFGKPRYTLKVDLQKAYDSVNWDFLFGLLIAIGTPLKFERCKARKSSIFVAGVSHEAA 316
Query: 121 TVLANSMGFALGTLPVRYLGVPLLSGRMRSSDCAPLIQRITSRIQS 125
+ LA SMGF LG LPVRYLG+PLL+GR+RS+DCAPLIQRITS I+S
Sbjct: 317 SHLAASMGFGLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSWIRS 362
BLAST of PI0006148 vs. NCBI nr
Match:
XP_031745634.1 (uncharacterized protein LOC116406053 [Cucumis sativus])
HSP 1 Score: 152.9 bits (385), Expect = 1.8e-33
Identity = 79/149 (53.02%), Postives = 98/149 (65.77%), Query Frame = 0
Query: 1 MEDYRPISCCNVVYKCISKILADRLHVWLPFFIGGNQSAFVVGRSIVDNILLCQEMSGLI 60
+ED+ PISCC+V+YKCIS+ILADRL VWLP F+ GNQ AF+ GRSI+DNILLCQE+ G
Sbjct: 639 LEDFSPISCCSVIYKCISRILADRLRVWLPSFVSGNQPAFIPGRSIIDNILLCQELVGAY 698
Query: 61 ANLEKSSMCVAGVDIE-------------------------ATTVLANSMGFALGTLPVR 120
C VD++ ++ LA +MGF++G LPVR
Sbjct: 699 HLHRGKPRCTMKVDLQKAYDYVNWDFLFGLLIAIGTPLRFFESSRLAANMGFSIGHLPVR 758
Query: 121 YLGVPLLSGRMRSSDCAPLIQRITSRIQS 125
YLG+PLLS R+RSSDC PLIQRITSRI+S
Sbjct: 759 YLGLPLLSRRLRSSDCDPLIQRITSRIRS 787
BLAST of PI0006148 vs. NCBI nr
Match:
XP_031740402.1 (uncharacterized protein LOC116403409 [Cucumis sativus] >XP_031740413.1 uncharacterized protein LOC116403417 [Cucumis sativus] >XP_031745405.1 uncharacterized protein LOC116405607 [Cucumis sativus] >XP_031745422.1 uncharacterized protein LOC116405638 [Cucumis sativus] >XP_031745640.1 uncharacterized protein LOC116406072 [Cucumis sativus])
HSP 1 Score: 149.8 bits (377), Expect = 1.5e-32
Identity = 85/189 (44.97%), Postives = 104/189 (55.03%), Query Frame = 0
Query: 1 MEDYRPISCCNVVYKCISKILADRLHVWLPFFIGGNQSAFVVGRSIVDNILLCQ------ 60
+ED+ PISCC+V+YKCIS+ILADRL VWLP F+ GNQ AF+ GRSI+DNILLCQ
Sbjct: 302 LEDFSPISCCSVIYKCISRILADRLRVWLPSFVSGNQPAFIPGRSIIDNILLCQELVGAY 361
Query: 61 -----------------------------------------------------------E 120
E
Sbjct: 362 HLHRGKPRCTMKVDLQKAYDYVNWDFLFGLLIAIDDLMIFCTADNHSMSFIKETIKRFGE 421
Query: 121 MSGLIANLEKSSMCVAGVDIEATTVLANSMGFALGTLPVRYLGVPLLSGRMRSSDCAPLI 125
+SGL ANL KS + + GV+ + LA +MGF++G LPVRYLG+PLLS R+RSSDC PLI
Sbjct: 422 LSGLFANLAKSLIFLVGVNSSKASRLAANMGFSIGHLPVRYLGLPLLSRRLRSSDCDPLI 481
BLAST of PI0006148 vs. NCBI nr
Match:
XP_008452126.1 (PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo])
HSP 1 Score: 148.3 bits (373), Expect = 4.4e-32
Identity = 89/212 (41.98%), Postives = 106/212 (50.00%), Query Frame = 0
Query: 1 MEDYRPISCCNVVYKCISKILADRLHVWLPFFIGGNQSAFVVGRSIVDNILLCQ------ 60
+ED+RPISCCNV+YKCISKILADRL VWLP FI NQSAF++GRSI++NILLCQ
Sbjct: 399 LEDFRPISCCNVLYKCISKILADRLRVWLPSFISSNQSAFILGRSIIENILLCQELVGGY 458
Query: 61 ------------------------------------------------------------ 120
Sbjct: 459 HLNSGKPRCTLKVDLQKAYDSVNWDFLFGLQISISTPLKKGVRQGDPLSLFLFVMVMEVL 518
Query: 121 ----------------------EMSGLIANLEKSSMCVAGVDIEATTVLANSMGFALGTL 125
E+SGL AN KSS+ +AGV+ E + LA MGF G L
Sbjct: 519 SRMLNKIPQSFQFHHRCEKRFGELSGLFANPRKSSIFIAGVNNENASRLAACMGFVRGNL 578
BLAST of PI0006148 vs. TAIR 10
Match:
AT3G24255.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )
HSP 1 Score: 49.3 bits (116), Expect = 2.6e-06
Identity = 25/53 (47.17%), Postives = 35/53 (66.04%), Query Frame = 0
Query: 70 VAGVDIEATTVLANSMGFALGTLPVRYLGVPLLSGRMRSSDCAPLIQRITSRI 123
+AGV + +S FA G LPVRYLG+PLL+ +M +SD PL+++I RI
Sbjct: 1 MAGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRI 53
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7V4C1 | 5.3e-39 | 55.29 | Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... | [more] |
A0A1S4E258 | 1.1e-36 | 55.42 | uncharacterized protein LOC103496880 OS=Cucumis melo OX=3656 GN=LOC103496880 PE=... | [more] |
A0A1S3BSI8 | 2.1e-32 | 41.98 | uncharacterized protein LOC103493225 OS=Cucumis melo OX=3656 GN=LOC103493225 PE=... | [more] |
A0A5A7V5J2 | 1.8e-31 | 45.27 | Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak... | [more] |
A0A5D3DSA8 | 3.4e-30 | 46.37 | Putative non-LTR retroelement reverse transcriptase OS=Cucumis melo var. makuwa ... | [more] |
Match Name | E-value | Identity | Description | |
KAA0060725.1 | 1.1e-38 | 55.29 | uncharacterized protein E6C27_scaffold72G00120 [Cucumis melo var. makuwa] >TYK01... | [more] |
XP_016902060.1 | 2.3e-36 | 55.42 | PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo] | [more] |
XP_031745634.1 | 1.8e-33 | 53.02 | uncharacterized protein LOC116406053 [Cucumis sativus] | [more] |
XP_031740402.1 | 1.5e-32 | 44.97 | uncharacterized protein LOC116403409 [Cucumis sativus] >XP_031740413.1 uncharact... | [more] |
XP_008452126.1 | 4.4e-32 | 41.98 | PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo] | [more] |
Match Name | E-value | Identity | Description | |
AT3G24255.1 | 2.6e-06 | 47.17 | RNA-directed DNA polymerase (reverse transcriptase)-related family protein | [more] |