PI0006139 (gene) Melon (PI 482460) v1

Overview


Name	PI0006139
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	F-box domain-containing protein
Location	chr08: 4303705 .. 4305245 (+)
RNA-Seq Expression	PI0006139
Synteny	PI0006139

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACAACCTCTTCCCTCACTTTCTTCTTCGCCGCCACCGTGGGAGGTGCTTCTTCTCGTCGCCGAACGGCTCGACCCCAAAACCCTGGCCACCGCCTCCTGCGTTTGCAAGTCTTGGTCCATTTCCATGGCCTCCGACCACCTTTGGGAGCCTATTTTCACCGCTAATTTCCCTTCTCTCTTTAACCTTGCTATCTCCGCCGCCACGTCACCACCTGTCTCCTTCCGCCGTCTCTTTGGCCTTGGCTACATTGCTGCCGCTCGTCGCCGTCCCGCTCAGTCCAAACCTACTCTTTCCCTCACCGACCTCGTCTTTGTTATTAGTATTTCCTTCACCGACAAAGGTCGGTGTATTATTGCTTGTGACGGAGTGAATAAAGAAGAAAAAGGTAATTTTTAATGCTTTTGTACACATTGAGAAGCTACGTTAAATAACGTAGGGGCCATTGGGTTGATTTTAAAACTCTGGTAACATTTGTTTTTTTAAAAAAAATATCAAGTCCAATGTTTTAAAATAAATAAATTTACGAAATATTTACAATTCATAAAAAAAAAAAAAAAAAATTCTAAAAACAGTTTTAAATTTTTTTAGAAGAAAACATCATCGATGCATCTCACCAAAAAATTTCAATTATAACGTTGACAAGCCTCATATTGGGCGTGATATTCGCATACACACAAGTATTACCCATTTTTATTTTGGCAAAATTTTCAAACTGGAAAATGGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCATTTTGCTAAATTAGCAAGTAAACGGGCATTTTGCTGTATACATGAAATGAAAAGAACCTGAGTTATTGTTTGCAAATTTTCACATACGCAAATCAGGTTTATAAAAAATTAAGGTAATAAAAGACCTAAAACATTCTCTCTCTTTTTTTTTTTTCACGATAAAATCAATCTAAAAGTTCGAAAAGTAATAAAAGTAACTTTTATTTTTATTTATTTATTTATTTTGTTTAAAACTGTACTAAAAAATGCTAGCTAGAGTTCGAATATATATATAATTCTTCATTCCTTGAAAACTTGTAGCTCCGCGACCACAATCCAGCCTCACCGTCGTGAAGCATGGCGGGGAGCTACCCGTGGATCGAAATGGACTATTCAAATTCGACATAAATCTCAACGAGAACGGGGACGGTGGTCCGGTGGTGATCGGAGCAAGAGAGGAGGTAGAGGTGGTGTGGAACATAGTGTTAGAAGGGTGGAGGGGGTATTTACAATGATTGAATGTGGAGGAAGAGTGGGAATGGCTCCGAGAGCGGACGGGTGGTTCTCGGAGGAGCTCCCGGCAGCGGGGTGCTGCCCGAACGTTGTGAGCGGCGGCATTGTGGGGGATTTGAGACTAGGGTTGTGTGGAAACGGAGGAGGGAGTAATAAGGTTAGGATTGAAAGTGTGAGTGTAGGGATGATGAGTGTTGTGAGTTGGAGATATGTGAGTTTGGATGATGGGTTAATGTATTTGCAACATTTTTTGTTCAATGCTAACGTCTAA

mRNA sequence

ATGGCACAACCTCTTCCCTCACTTTCTTCTTCGCCGCCACCGTGGGAGGTGCTTCTTCTCGTCGCCGAACGGCTCGACCCCAAAACCCTGGCCACCGCCTCCTGCGTTTGCAAGTCTTGGTCCATTTCCATGGCCTCCGACCACCTTTGGGAGCCTATTTTCACCGCTAATTTCCCTTCTCTCTTTAACCTTGCTATCTCCGCCGCCACGTCACCACCTGTCTCCTTCCGCCGTCTCTTTGGCCTTGGCTACATTGCTGCCGCTCGTCGCCGTCCCGCTCAGTCCAAACCTACTCTTTCCCTCACCGACCTCGTCTTTGTTATTAGTATTTCCTTCACCGACAAAGGTCGGTGTATTATTGCTTGTGACGGAGTGAATAAAGAAGAAAAAGCTCCGCGACCACAATCCAGCCTCACCGTCGTGAAGCATGGCGGGGAGCTACCCGTGGATCGAAATGGACTATTCAAATTCGACATAAATCTCAACGAGAACGGGGACGGTGGTCCGGTGGTGATCGGAGCAAGAGAGGAGGTAGAGGTGGGGGTATTTACAATGATTGAATGTGGAGGAAGAGTGGGAATGGCTCCGAGAGCGGACGGGTGGTTCTCGGAGGAGCTCCCGGCAGCGGGGTGCTGCCCGAACGTTGTGAGCGGCGGCATTGTGGGGGATTTGAGACTAGGGTTGTGTGGAAACGGAGGAGGGAGTAATAAGGTTAGGATTGAAAGTGTGAGTGTAGGGATGATGAGTGTTGTGAGTTGGAGATATGTGAGTTTGGATGATGGGTTAATGTATTTGCAACATTTTTTGTTCAATGCTAACGTCTAA

Coding sequence (CDS)

ATGGCACAACCTCTTCCCTCACTTTCTTCTTCGCCGCCACCGTGGGAGGTGCTTCTTCTCGTCGCCGAACGGCTCGACCCCAAAACCCTGGCCACCGCCTCCTGCGTTTGCAAGTCTTGGTCCATTTCCATGGCCTCCGACCACCTTTGGGAGCCTATTTTCACCGCTAATTTCCCTTCTCTCTTTAACCTTGCTATCTCCGCCGCCACGTCACCACCTGTCTCCTTCCGCCGTCTCTTTGGCCTTGGCTACATTGCTGCCGCTCGTCGCCGTCCCGCTCAGTCCAAACCTACTCTTTCCCTCACCGACCTCGTCTTTGTTATTAGTATTTCCTTCACCGACAAAGGTCGGTGTATTATTGCTTGTGACGGAGTGAATAAAGAAGAAAAAGCTCCGCGACCACAATCCAGCCTCACCGTCGTGAAGCATGGCGGGGAGCTACCCGTGGATCGAAATGGACTATTCAAATTCGACATAAATCTCAACGAGAACGGGGACGGTGGTCCGGTGGTGATCGGAGCAAGAGAGGAGGTAGAGGTGGGGGTATTTACAATGATTGAATGTGGAGGAAGAGTGGGAATGGCTCCGAGAGCGGACGGGTGGTTCTCGGAGGAGCTCCCGGCAGCGGGGTGCTGCCCGAACGTTGTGAGCGGCGGCATTGTGGGGGATTTGAGACTAGGGTTGTGTGGAAACGGAGGAGGGAGTAATAAGGTTAGGATTGAAAGTGTGAGTGTAGGGATGATGAGTGTTGTGAGTTGGAGATATGTGAGTTTGGATGATGGGTTAATGTATTTGCAACATTTTTTGTTCAATGCTAACGTCTAA

Protein sequence

MAQPLPSLSSSPPPWEVLLLVAERLDPKTLATASCVCKSWSISMASDHLWEPIFTANFPSLFNLAISAATSPPVSFRRLFGLGYIAAARRRPAQSKPTLSLTDLVFVISISFTDKGRCIIACDGVNKEEKAPRPQSSLTVVKHGGELPVDRNGLFKFDINLNENGDGGPVVIGAREEVEVGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNVVSGGIVGDLRLGLCGNGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFNANV

Homology

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BLAST of PI0006139 vs. ExPASy Swiss-Prot
Match: Q5EAF6 (Probable F-box protein At5g04010 OS=Arabidopsis thaliana OX=3702 GN=NSFBx PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.4e-17
Identity = 79/272 (29.04%), Postives = 127/272 (46.69%), Query Frame = 0


Query: 11  SPPPWEVLLLVAERLDPKTLATASCVCKSWSISMASDHLWEPIFTANFPSLFNLAISAAT 70
           SPP WE+L LV   +DP++LA ASCV  +WS   +S+ LW+ +  A   S+F  AI+   
Sbjct: 51  SPPSWEILCLVGPYMDPESLAVASCVSTTWSKCFSSEDLWKSL-PATRHSIFAKAITKEG 110

Query: 71  SPP--VSFRRLFGLGYIAAARRRPAQ-SKPTLSLTDLVFVISISFTDKGRCIIACDGVNK 130
           + P  +S++RL      AA RRR  Q ++P +SL+DLVF++ +S   K            
Sbjct: 111 AKPAWLSYKRLISEAESAAKRRRNNQPAEPKISLSDLVFIVHVSAGSK------------ 170

Query: 131 EEKAPRPQSSLTVVKHGGELPVDRNGLFKFDINLNENGDGGP---------VVIGAREEV 190
                       VVK G +L    N  F+ + ++ ++G             VV+   E +
Sbjct: 171 ---------EAVVVKQGKDLVFGSNERFQIEADVRDSGFTADMKDVSMSWNVVLRNYERM 230

Query: 191 EVGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNVVSG-GIVGDLRLGLCGNGGGSNK 250
            +   T+I+            GWF++ELP  G       G  +VG+++          N+
Sbjct: 231 FLMSETVIK------SLDSMIGWFTDELP--GTKNRYCDGSNLVGEVKPSF-------NE 285

Query: 251 VRIESVSVGMMSVVSWRYVSLDDGLMYLQHFL 270
             ++ V   +    +W+ + +DD L YLQ FL
Sbjct: 291 DVLDKVVFAIADSRNWKSLFVDDVLRYLQCFL 285

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BLAST of PI0006139 vs. ExPASy TrEMBL
Match: A0A0A0LDE5 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G497390 PE=4 SV=1)

HSP 1 Score: 522.3 bits (1344), Expect = 1.2e-144
Identity = 260/284 (91.55%), Postives = 267/284 (94.01%), Query Frame = 0


Query: 1   MAQPLPSLSSSPPPWEVLLLVAERLDPKTLATASCVCKSWSISMASDHLWEPIFTANFPS 60
           MAQPLPSLSSSPPPWEV+LLVAERLDPKTLATASCVCKSWS+SMASDHLWEPIFTANFPS
Sbjct: 1   MAQPLPSLSSSPPPWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPS 60

Query: 61  LFNLAISAATSPPVSFRRLFGLGYIAAARRRPAQSKPTLSLTDLVFVISISFTDKGRCII 120
           LFNLA + ATSP VSFRRLFGLGYIAAARRRPAQSKP+LSL+DLVFVISISFT+K RC I
Sbjct: 61  LFNLATAPATSPHVSFRRLFGLGYIAAARRRPAQSKPSLSLSDLVFVISISFTNKDRCSI 120

Query: 121 ACDGVNKEEKAPRPQSSLTVVKHGGELPVDRNGLFKFDINLNENGDGGPVVIGAREEVEV 180
           ACDGVNKEEKAPRPQSSLT+VKHG ELPVDRNGLFKFDINLNENGDG PVVIGAREEVEV
Sbjct: 121 ACDGVNKEEKAPRPQSSLTIVKHGEELPVDRNGLFKFDINLNENGDGAPVVIGAREEVEV 180

Query: 181 ----------GVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNVVSGGIVGDLRLGLCG 240
                     GVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNVVSGGIVGDLRLGLCG
Sbjct: 181 VWNIVLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNVVSGGIVGDLRLGLCG 240

Query: 241 NGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFNANV 275
           NGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFNANV
Sbjct: 241 NGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFNANV 284

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BLAST of PI0006139 vs. ExPASy TrEMBL
Match: A0A5D3DEJ6 (Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1721G00070 PE=4 SV=1)

HSP 1 Score: 508.4 bits (1308), Expect = 1.8e-140
Identity = 256/284 (90.14%), Postives = 263/284 (92.61%), Query Frame = 0


Query: 1   MAQPLPSLSSSPPPWEVLLLVAERLDPKTLATASCVCKSWSISMASDHLWEPIFTANFPS 60
           MAQPLPSLSSSPPPWEV+LLVAERLDPKTLATASCVCKSWS+SMASDHLWEPIFTANFPS
Sbjct: 1   MAQPLPSLSSSPPPWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPS 60

Query: 61  LFNLAISAATSPPVSFRRLFGLGYIAAARRRPAQSKPTLSLTDLVFVISISFTDKGRCII 120
           LFNLA +  +SPPVSFRRLFGLGYIAAARRRPAQ KPTLSL+DLVFVISISFTDK + II
Sbjct: 61  LFNLASAPTSSPPVSFRRLFGLGYIAAARRRPAQLKPTLSLSDLVFVISISFTDKDQSII 120

Query: 121 ACDGVNKEEKAPRPQSSLTVVKHGGELPVDRNGLFKFDINLNENGDGGPVVIGAREEVEV 180
           ACDGVNKEEKAPRPQSSLTVVKHG ELPV+RNGLFKFDINLNENG   PVVIGAREEVEV
Sbjct: 121 ACDGVNKEEKAPRPQSSLTVVKHGEELPVERNGLFKFDINLNENG-AAPVVIGAREEVEV 180

Query: 181 ----------GVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNVVSGGIVGDLRLGLCG 240
                     GVFTMIECGGRVGMAPRADGWFSEELPAAGCCPN VSGGIVGDLRLGLCG
Sbjct: 181 VWNIVLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGIVGDLRLGLCG 240

Query: 241 NGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFNANV 275
           NGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFNANV
Sbjct: 241 NGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFNANV 283

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BLAST of PI0006139 vs. ExPASy TrEMBL
Match: A0A1S3BLJ1 (probable F-box protein At5g04010 OS=Cucumis melo OX=3656 GN=LOC103491161 PE=4 SV=1)

HSP 1 Score: 508.4 bits (1308), Expect = 1.8e-140
Identity = 256/284 (90.14%), Postives = 263/284 (92.61%), Query Frame = 0


Query: 1   MAQPLPSLSSSPPPWEVLLLVAERLDPKTLATASCVCKSWSISMASDHLWEPIFTANFPS 60
           MAQPLPSLSSSPPPWEV+LLVAERLDPKTLATASCVCKSWS+SMASDHLWEPIFTANFPS
Sbjct: 1   MAQPLPSLSSSPPPWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPS 60

Query: 61  LFNLAISAATSPPVSFRRLFGLGYIAAARRRPAQSKPTLSLTDLVFVISISFTDKGRCII 120
           LFNLA +  +SPPVSFRRLFGLGYIAAARRRPAQ KPTLSL+DLVFVISISFTDK + II
Sbjct: 61  LFNLASAPTSSPPVSFRRLFGLGYIAAARRRPAQLKPTLSLSDLVFVISISFTDKDQSII 120

Query: 121 ACDGVNKEEKAPRPQSSLTVVKHGGELPVDRNGLFKFDINLNENGDGGPVVIGAREEVEV 180
           ACDGVNKEEKAPRPQSSLTVVKHG ELPV+RNGLFKFDINLNENG   PVVIGAREEVEV
Sbjct: 121 ACDGVNKEEKAPRPQSSLTVVKHGEELPVERNGLFKFDINLNENG-AAPVVIGAREEVEV 180

Query: 181 ----------GVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNVVSGGIVGDLRLGLCG 240
                     GVFTMIECGGRVGMAPRADGWFSEELPAAGCCPN VSGGIVGDLRLGLCG
Sbjct: 181 VWNIVLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGIVGDLRLGLCG 240

Query: 241 NGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFNANV 275
           NGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFNANV
Sbjct: 241 NGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFNANV 283

[Close]

BLAST of PI0006139 vs. ExPASy TrEMBL
Match: A0A6J1EEG3 (probable F-box protein At5g04010 OS=Cucurbita moschata OX=3662 GN=LOC111432489 PE=4 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 7.2e-105
Identity = 214/284 (75.35%), Postives = 230/284 (80.99%), Query Frame = 0


Query: 1   MAQPLPSLSSSPPPWEVLLLVAERLDPKTLATASCVCKSWSISMASDHLWEPIFTANFPS 60
           MAQ L     SPPPWEVLLLVAERLDP+TLATASCVCKSWSISMAS++LWEPIF+A FPS
Sbjct: 1   MAQSLQP-PPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPS 60

Query: 61  LFNLAISAA-TSPPVSFRRLFGLGYIAAARRRPAQSKPTLSLTDLVFVISISFTDKGRCI 120
           L NLA S+A TSPPVSFRRLFGLG+ AAARRRPA SKP LSL+DLVFVIS+S TDK    
Sbjct: 61  LTNLAASSATTSPPVSFRRLFGLGHTAAARRRPAPSKPILSLSDLVFVISVSGTDKANGC 120

Query: 121 IACDGVNKEEKAPRPQSSLTVVKHGGELPVDRNGLFKFDINLNENGDGGPVVIGAREEVE 180
           I   G  KEEK   P+   TVVKHGGEL VDRN LFKFDIN++ NGD   VVIGA EEVE
Sbjct: 121 IVSGGTKKEEK-DVPEPMFTVVKHGGELAVDRNRLFKFDINVS-NGD-EVVVIGAGEEVE 180

Query: 181 V----------GVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNVVSGGIVGDLRLGLC 240
           V           VFTMIECGGRVGMAPRADGWFSEELPAAGCCP  VSGGIV DL+LG+C
Sbjct: 181 VVWNVVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVC 240

Query: 241 --GNGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFN 272
             G GG ++KVRIESVSVGMMSV+SWRYVSLDDGLMYLQHFLFN
Sbjct: 241 KNGEGGKNDKVRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFN 280

[Close]

BLAST of PI0006139 vs. ExPASy TrEMBL
Match: A0A6J1HMX9 (probable F-box protein At5g04010 OS=Cucurbita maxima OX=3661 GN=LOC111466077 PE=4 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 6.7e-103
Identity = 207/284 (72.89%), Postives = 228/284 (80.28%), Query Frame = 0


Query: 1   MAQPLPSLSSSPPPWEVLLLVAERLDPKTLATASCVCKSWSISMASDHLWEPIFTANFPS 60
           MAQ L     SPPPWEVLLLVAERLDP+TLATASCVCKSWSISMAS+HLWEPIF+A FPS
Sbjct: 1   MAQSLQP-PPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNHLWEPIFSAKFPS 60

Query: 61  LFNLAISAAT-SPPVSFRRLFGLGYIAAARRRPAQSKPTLSLTDLVFVISISFTDKGRCI 120
           L NLA S+AT SPP+SF RLFGLG+ AAARRRPA SKP LSL+DL+FVIS+S TDK    
Sbjct: 61  LTNLAASSATASPPLSFCRLFGLGHTAAARRRPAPSKPILSLSDLIFVISVSGTDKADGC 120

Query: 121 IACDGVNKEEKAPRPQSSLTVVKHGGELPVDRNGLFKFDINLNENGDGGPVVIGAREEVE 180
           I   G  KEEK   P+   T+VKHGGEL VDRNGLFKFDIN+++  +   VVIGA  EVE
Sbjct: 121 IVGGGATKEEK-DVPELMFTIVKHGGELVVDRNGLFKFDINVSKGDEA--VVIGAGGEVE 180

Query: 181 V----------GVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNVVSGGIVGDLRLGLC 240
           V           VFTMIECGGRVGMAPRADGWFSEELPAAGCCP  VSGGIV DL+LG+C
Sbjct: 181 VVWNVVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVC 240

Query: 241 --GNGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFN 272
             G GG +++VRIESVSVGMMSV+SWRYVSLDDGLMYLQHFLFN
Sbjct: 241 KNGEGGKNDEVRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFN 280

[Close]

BLAST of PI0006139 vs. NCBI nr
Match: XP_031740421.1 (probable F-box protein At5g04010 [Cucumis sativus] >KAE8649452.1 hypothetical protein Csa_018886 [Cucumis sativus])

HSP 1 Score: 522.3 bits (1344), Expect = 2.5e-144
Identity = 260/284 (91.55%), Postives = 267/284 (94.01%), Query Frame = 0


Query: 1   MAQPLPSLSSSPPPWEVLLLVAERLDPKTLATASCVCKSWSISMASDHLWEPIFTANFPS 60
           MAQPLPSLSSSPPPWEV+LLVAERLDPKTLATASCVCKSWS+SMASDHLWEPIFTANFPS
Sbjct: 1   MAQPLPSLSSSPPPWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPS 60

Query: 61  LFNLAISAATSPPVSFRRLFGLGYIAAARRRPAQSKPTLSLTDLVFVISISFTDKGRCII 120
           LFNLA + ATSP VSFRRLFGLGYIAAARRRPAQSKP+LSL+DLVFVISISFT+K RC I
Sbjct: 61  LFNLATAPATSPHVSFRRLFGLGYIAAARRRPAQSKPSLSLSDLVFVISISFTNKDRCSI 120

Query: 121 ACDGVNKEEKAPRPQSSLTVVKHGGELPVDRNGLFKFDINLNENGDGGPVVIGAREEVEV 180
           ACDGVNKEEKAPRPQSSLT+VKHG ELPVDRNGLFKFDINLNENGDG PVVIGAREEVEV
Sbjct: 121 ACDGVNKEEKAPRPQSSLTIVKHGEELPVDRNGLFKFDINLNENGDGAPVVIGAREEVEV 180

Query: 181 ----------GVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNVVSGGIVGDLRLGLCG 240
                     GVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNVVSGGIVGDLRLGLCG
Sbjct: 181 VWNIVLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNVVSGGIVGDLRLGLCG 240

Query: 241 NGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFNANV 275
           NGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFNANV
Sbjct: 241 NGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFNANV 284

[Close]

BLAST of PI0006139 vs. NCBI nr
Match: XP_008449214.1 (PREDICTED: probable F-box protein At5g04010 [Cucumis melo] >KAA0047228.1 putative F-box protein [Cucumis melo var. makuwa] >TYK21759.1 putative F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 508.4 bits (1308), Expect = 3.7e-140
Identity = 256/284 (90.14%), Postives = 263/284 (92.61%), Query Frame = 0


Query: 1   MAQPLPSLSSSPPPWEVLLLVAERLDPKTLATASCVCKSWSISMASDHLWEPIFTANFPS 60
           MAQPLPSLSSSPPPWEV+LLVAERLDPKTLATASCVCKSWS+SMASDHLWEPIFTANFPS
Sbjct: 1   MAQPLPSLSSSPPPWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPS 60

Query: 61  LFNLAISAATSPPVSFRRLFGLGYIAAARRRPAQSKPTLSLTDLVFVISISFTDKGRCII 120
           LFNLA +  +SPPVSFRRLFGLGYIAAARRRPAQ KPTLSL+DLVFVISISFTDK + II
Sbjct: 61  LFNLASAPTSSPPVSFRRLFGLGYIAAARRRPAQLKPTLSLSDLVFVISISFTDKDQSII 120

Query: 121 ACDGVNKEEKAPRPQSSLTVVKHGGELPVDRNGLFKFDINLNENGDGGPVVIGAREEVEV 180
           ACDGVNKEEKAPRPQSSLTVVKHG ELPV+RNGLFKFDINLNENG   PVVIGAREEVEV
Sbjct: 121 ACDGVNKEEKAPRPQSSLTVVKHGEELPVERNGLFKFDINLNENG-AAPVVIGAREEVEV 180

Query: 181 ----------GVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNVVSGGIVGDLRLGLCG 240
                     GVFTMIECGGRVGMAPRADGWFSEELPAAGCCPN VSGGIVGDLRLGLCG
Sbjct: 181 VWNIVLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGIVGDLRLGLCG 240

Query: 241 NGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFNANV 275
           NGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFNANV
Sbjct: 241 NGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFNANV 283

[Close]

BLAST of PI0006139 vs. NCBI nr
Match: XP_038883618.1 (probable F-box protein At5g04010 [Benincasa hispida])

HSP 1 Score: 440.3 bits (1131), Expect = 1.2e-119
Identity = 237/288 (82.29%), Postives = 250/288 (86.81%), Query Frame = 0


Query: 1   MAQPLPSLSSSPPPWEVLLLVAERLDPKTLATASCVCKSWSISMASDHLWEPIFTANFPS 60
           MA PLPSL SSPPPWEVLLLVAERLDPKTLATASCVCK WSISMASDHLWEPIFTANFPS
Sbjct: 1   MAPPLPSL-SSPPPWEVLLLVAERLDPKTLATASCVCKFWSISMASDHLWEPIFTANFPS 60

Query: 61  LFNLAI--SAATSPPVSFRRLFGLGYIAAARRRPAQSKPTLSLTDLVFVISISFTDKGRC 120
           L NLAI  SA TSPPVSFRRLFGLG+ AAARRRPA SKPTLSL+DL+FVISIS TDK R 
Sbjct: 61  LSNLAISSSAPTSPPVSFRRLFGLGHTAAARRRPAPSKPTLSLSDLIFVISISSTDKDRY 120

Query: 121 IIACDGVNKEEKAPRPQSSLTVVKHGGELPVDRNGLFKFDINLN-ENGD-GGPVVIGARE 180
           I+  + V K +KAP PQS LTVVKHGGEL VDRNGLFKFDINL+ +NG+ GGPVVIG RE
Sbjct: 121 IVGHELVEK-DKAP-PQSILTVVKHGGELAVDRNGLFKFDINLDGDNGNKGGPVVIGGRE 180

Query: 181 EVEV----------GVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNVVSGGIVGDLRL 240
           EVEV          GVFTMIECGGRVGMAPRADGWFSEELPAAGCC NVVSGGIV DL+L
Sbjct: 181 EVEVVWNLVLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCSNVVSGGIVADLKL 240

Query: 241 GLCGNGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFNANV 275
           GL GN GG +KVRIESVSVGMMS+VSWRYVSLDDGLMYLQHFLFNA+V
Sbjct: 241 GLRGNNGGGSKVRIESVSVGMMSIVSWRYVSLDDGLMYLQHFLFNASV 285

[Close]

BLAST of PI0006139 vs. NCBI nr
Match: XP_022925168.1 (probable F-box protein At5g04010 [Cucurbita moschata])

HSP 1 Score: 390.2 bits (1001), Expect = 1.5e-104
Identity = 214/284 (75.35%), Postives = 230/284 (80.99%), Query Frame = 0


Query: 1   MAQPLPSLSSSPPPWEVLLLVAERLDPKTLATASCVCKSWSISMASDHLWEPIFTANFPS 60
           MAQ L     SPPPWEVLLLVAERLDP+TLATASCVCKSWSISMAS++LWEPIF+A FPS
Sbjct: 1   MAQSLQP-PPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPS 60

Query: 61  LFNLAISAA-TSPPVSFRRLFGLGYIAAARRRPAQSKPTLSLTDLVFVISISFTDKGRCI 120
           L NLA S+A TSPPVSFRRLFGLG+ AAARRRPA SKP LSL+DLVFVIS+S TDK    
Sbjct: 61  LTNLAASSATTSPPVSFRRLFGLGHTAAARRRPAPSKPILSLSDLVFVISVSGTDKANGC 120

Query: 121 IACDGVNKEEKAPRPQSSLTVVKHGGELPVDRNGLFKFDINLNENGDGGPVVIGAREEVE 180
           I   G  KEEK   P+   TVVKHGGEL VDRN LFKFDIN++ NGD   VVIGA EEVE
Sbjct: 121 IVSGGTKKEEK-DVPEPMFTVVKHGGELAVDRNRLFKFDINVS-NGD-EVVVIGAGEEVE 180

Query: 181 V----------GVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNVVSGGIVGDLRLGLC 240
           V           VFTMIECGGRVGMAPRADGWFSEELPAAGCCP  VSGGIV DL+LG+C
Sbjct: 181 VVWNVVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVC 240

Query: 241 --GNGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFN 272
             G GG ++KVRIESVSVGMMSV+SWRYVSLDDGLMYLQHFLFN
Sbjct: 241 KNGEGGKNDKVRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFN 280

[Close]

BLAST of PI0006139 vs. NCBI nr
Match: XP_023518459.1 (probable F-box protein At5g04010 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 387.5 bits (994), Expect = 9.6e-104
Identity = 212/285 (74.39%), Postives = 231/285 (81.05%), Query Frame = 0


Query: 1   MAQPLPSLSSSPPPWEVLLLVAERLDPKTLATASCVCKSWSISMASDHLWEPIFTANFPS 60
           MAQ L     SPPPWEVLLLVAERLDP+TLATASCVCKSWSISMAS++LWEPIF+A FPS
Sbjct: 1   MAQSLQP-PPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPS 60

Query: 61  LFNLAISAA-TSPPVSFRRLFGLGYIAAARRRPAQSKPTLSLTDLVFVISISFTDKG-RC 120
           L NLA S+A TSPPVSFRRLFGLG+ AAARRRPA SKP L L+DLVFVIS+S TDK  RC
Sbjct: 61  LTNLAASSATTSPPVSFRRLFGLGHTAAARRRPAPSKPILCLSDLVFVISVSSTDKADRC 120

Query: 121 IIACDGVNKEEKAPRPQSSLTVVKHGGELPVDRNGLFKFDINLNENGDGGPVVIGAREEV 180
           I+   G  KEEK   P+   TVVKHGGEL VDRNGLFKFDIN++ + +   VVIGA EEV
Sbjct: 121 IVGA-GAKKEEK-DVPEPMFTVVKHGGELAVDRNGLFKFDINVSNSDE--VVVIGAGEEV 180

Query: 181 EV----------GVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNVVSGGIVGDLRLGL 240
            V           VFTMIECGGRVGMAPRADGWFSEELPAAGCCP  VSGGIV DL+LG+
Sbjct: 181 GVVWNVVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGV 240

Query: 241 C--GNGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFN 272
           C  G GG ++KVRIESVSVGMMSV+SWRYVSLDDGLMYLQHFLFN
Sbjct: 241 CKNGEGGKNDKVRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFN 280

[Close]

BLAST of PI0006139 vs. TAIR 10
Match: AT5G04010.1 (F-box family protein )

HSP 1 Score: 90.9 bits (224), Expect = 1.7e-18
Identity = 79/272 (29.04%), Postives = 127/272 (46.69%), Query Frame = 0


Query: 11  SPPPWEVLLLVAERLDPKTLATASCVCKSWSISMASDHLWEPIFTANFPSLFNLAISAAT 70
           SPP WE+L LV   +DP++LA ASCV  +WS   +S+ LW+ +  A   S+F  AI+   
Sbjct: 51  SPPSWEILCLVGPYMDPESLAVASCVSTTWSKCFSSEDLWKSL-PATRHSIFAKAITKEG 110

Query: 71  SPP--VSFRRLFGLGYIAAARRRPAQ-SKPTLSLTDLVFVISISFTDKGRCIIACDGVNK 130
           + P  +S++RL      AA RRR  Q ++P +SL+DLVF++ +S   K            
Sbjct: 111 AKPAWLSYKRLISEAESAAKRRRNNQPAEPKISLSDLVFIVHVSAGSK------------ 170

Query: 131 EEKAPRPQSSLTVVKHGGELPVDRNGLFKFDINLNENGDGGP---------VVIGAREEV 190
                       VVK G +L    N  F+ + ++ ++G             VV+   E +
Sbjct: 171 ---------EAVVVKQGKDLVFGSNERFQIEADVRDSGFTADMKDVSMSWNVVLRNYERM 230

Query: 191 EVGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNVVSG-GIVGDLRLGLCGNGGGSNK 250
            +   T+I+            GWF++ELP  G       G  +VG+++          N+
Sbjct: 231 FLMSETVIK------SLDSMIGWFTDELP--GTKNRYCDGSNLVGEVKPSF-------NE 285

Query: 251 VRIESVSVGMMSVVSWRYVSLDDGLMYLQHFL 270
             ++ V   +    +W+ + +DD L YLQ FL
Sbjct: 291 DVLDKVVFAIADSRNWKSLFVDDVLRYLQCFL 285

The following BLAST results are available for this feature:

BLAST of PI0006139 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5EAF6	2.4e-17	29.04	Probable F-box protein At5g04010 OS=Arabidopsis thaliana OX=3702 GN=NSFBx PE=2 S...	[more]

BLAST of PI0006139 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDE5	1.2e-144	91.55	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G497390 PE=4 ...	[more]
A0A5D3DEJ6	1.8e-140	90.14	Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1...	[more]
A0A1S3BLJ1	1.8e-140	90.14	probable F-box protein At5g04010 OS=Cucumis melo OX=3656 GN=LOC103491161 PE=4 SV...	[more]
A0A6J1EEG3	7.2e-105	75.35	probable F-box protein At5g04010 OS=Cucurbita moschata OX=3662 GN=LOC111432489 P...	[more]
A0A6J1HMX9	6.7e-103	72.89	probable F-box protein At5g04010 OS=Cucurbita maxima OX=3661 GN=LOC111466077 PE=...	[more]

BLAST of PI0006139 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031740421.1	2.5e-144	91.55	probable F-box protein At5g04010 [Cucumis sativus] >KAE8649452.1 hypothetical pr...	[more]
XP_008449214.1	3.7e-140	90.14	PREDICTED: probable F-box protein At5g04010 [Cucumis melo] >KAA0047228.1 putativ...	[more]
XP_038883618.1	1.2e-119	82.29	probable F-box protein At5g04010 [Benincasa hispida]	[more]
XP_022925168.1	1.5e-104	75.35	probable F-box protein At5g04010 [Cucurbita moschata]	[more]
XP_023518459.1	9.6e-104	74.39	probable F-box protein At5g04010 [Cucurbita pepo subsp. pepo]	[more]

BLAST of PI0006139 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G04010.1	1.7e-18	29.04	F-box family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 14..53 e-value: 2.7E-6 score: 27.1
None	No IPR available	GENE3D	1.20.1280.50		coord: 8..94 e-value: 7.0E-8 score: 34.3
None	No IPR available	PANTHER	PTHR12874:SF16	F-BOX PROTEIN	coord: 9..258
IPR045118	F-box only protein FBXO9/FBXO48	PANTHER	PTHR12874	F-BOX ONLY PROTEIN 48-RELATED	coord: 9..258
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 14..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0006139.1	PI0006139.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding