PI0006047 (gene) Melon (PI 482460) v1

Overview


Name	PI0006047
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr03: 15221877 .. 15222687 (+)
RNA-Seq Expression	PI0006047
Synteny	PI0006047

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCAGTCTGTCAATGAATATTTAGCAGTTCTTCAGCCCATCTGGACCCAGCTTAATCAAGCTAAAATCAGTGCAGATCATCTGCGTCTTATTAAGGTACTCATGGGGTTATGCCCAGAATATGAATCTATTCAGGCTGCTCTCCTTCACTGCAACCCCCTGCCTTCATTGGATGCATCTGTTCAGGAAATTCTCTTTGAGGAAAAACGACTTGGCATCATTCCTACCAAACAATCTGAAGTAGCCCTCGCCAGCACTCATCCACCTCATGGAGCAATACCGTTTTGTAAAAATTGTAAGCTCTCCGGCCATAAATACATAGAGTGTCCTAAAATAGAGTGCAGGTATTGTCACAAACATGGCCACATTCTGGATAATTGTCCCACTCGTCCACCTCGACCACCGAGTTACACTACAAAATCAAGAAACTTTACCAAGTTTGATACTTCCTCAGTTGCTGCCGCTACCTCCTCAGATACTCCTCCTCTCAATCTCCAGATAAGTGATCTTCAGAGCTTATTAAATCAGTTACTTGCATCCTCTTCCTCTGCCCTTGTCGTAACACCAGGTAACAAATGGCTCCTAGACTCTGCATGTTGTAATCATATGACTTCTGATCTTTCTCTTATGACAACTCCCAGTACTGCAAAATCCCTACCCTCAATTTACACTGTTGATGGTAACTGTATGAATATCTCTCATATTGGCACCATTAATTCACCCCATCTAAGCCTTCCAAATTCTTATTGTGTCCCAAACTTGTCATTTAATCTTGTTTCCATAGGCCAATTGTGTGACCTTGGCTTAA

mRNA sequence

ATGGGTCAGTCTGTCAATGAATATTTAGCAGTTCTTCAGCCCATCTGGACCCAGCTTAATCAAGCTAAAATCAGTGCAGATCATCTGCGTCTTATTAAGGTACTCATGGGGTTATGCCCAGAATATGAATCTATTCAGGCTGCTCTCCTTCACTGCAACCCCCTGCCTTCATTGGATGCATCTGTTCAGGAAATTCTCTTTGAGGAAAAACGACTTGGCATCATTCCTACCAAACAATCTGAAGTAGCCCTCGCCAGCACTCATCCACCTCATGGAGCAATACCGTTTTGTAAAAATTGTAAGCTCTCCGGCCATAAATACATAGAGTGTCCTAAAATAGAGTGCAGGTATTGTCACAAACATGGCCACATTCTGGATAATTGTCCCACTCGTCCACCTCGACCACCGAGTTACACTACAAAATCAAGAAACTTTACCAAGTTTGATACTTCCTCAGTTGCTGCCGCTACCTCCTCAGATACTCCTCCTCTCAATCTCCAGATAAGTGATCTTCAGAGCTTATTAAATCAGTTACTTGCATCCTCTTCCTCTGCCCTTGTCGTAACACCAGTACTGCAAAATCCCTACCCTCAATTTACACTGTTGATGGCCAATTGTGTGACCTTGGCTTAA

Coding sequence (CDS)

ATGGGTCAGTCTGTCAATGAATATTTAGCAGTTCTTCAGCCCATCTGGACCCAGCTTAATCAAGCTAAAATCAGTGCAGATCATCTGCGTCTTATTAAGGTACTCATGGGGTTATGCCCAGAATATGAATCTATTCAGGCTGCTCTCCTTCACTGCAACCCCCTGCCTTCATTGGATGCATCTGTTCAGGAAATTCTCTTTGAGGAAAAACGACTTGGCATCATTCCTACCAAACAATCTGAAGTAGCCCTCGCCAGCACTCATCCACCTCATGGAGCAATACCGTTTTGTAAAAATTGTAAGCTCTCCGGCCATAAATACATAGAGTGTCCTAAAATAGAGTGCAGGTATTGTCACAAACATGGCCACATTCTGGATAATTGTCCCACTCGTCCACCTCGACCACCGAGTTACACTACAAAATCAAGAAACTTTACCAAGTTTGATACTTCCTCAGTTGCTGCCGCTACCTCCTCAGATACTCCTCCTCTCAATCTCCAGATAAGTGATCTTCAGAGCTTATTAAATCAGTTACTTGCATCCTCTTCCTCTGCCCTTGTCGTAACACCAGTACTGCAAAATCCCTACCCTCAATTTACACTGTTGATGGCCAATTGTGTGACCTTGGCTTAA

Protein sequence

MGQSVNEYLAVLQPIWTQLNQAKISADHLRLIKVLMGLCPEYESIQAALLHCNPLPSLDASVQEILFEEKRLGIIPTKQSEVALASTHPPHGAIPFCKNCKLSGHKYIECPKIECRYCHKHGHILDNCPTRPPRPPSYTTKSRNFTKFDTSSVAAATSSDTPPLNLQISDLQSLLNQLLASSSSALVVTPVLQNPYPQFTLLMANCVTLA

Homology

[Close]

BLAST of PI0006047 vs. ExPASy TrEMBL
Match: A0A5D3DCR3 (Zinc finger, CCHC-type OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00170 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 9.4e-73
Identity = 147/204 (72.06%), Postives = 167/204 (81.86%), Query Frame = 0


Query: 2   GQSVNEYLAVLQPIWTQLNQAKISADHLRLIKVLMGLCPEYESIQAALLHCNPLPSLDAS 61
           GQSVNEYLAVLQPIWTQL+QA IS DHLRLIKVLMGL PEYES++AALLH +PLPSLDA+
Sbjct: 45  GQSVNEYLAVLQPIWTQLDQANISKDHLRLIKVLMGLRPEYESVKAALLHRSPLPSLDAA 104

Query: 62  VQEILFEEKRLGIIPTKQSEVALASTHPPHGA-IPFCKNCKLSGHKYIECPKIECRYCHK 121
           +QEILFEEKRLGI  +K S+V LAST+ P GA   FCKNCKL+GHK+I+CPKIECRYCHK
Sbjct: 105 IQEILFEEKRLGINLSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIECRYCHK 164

Query: 122 HGHILDNCPTRPPRPPSYTTKSRNFTKFDTSSVAAATSSDTPPLNLQISDLQSLLNQLLA 181
            GHILDNCP +PPRP SY+T ++NFTK   SSV AAT  +       ISDLQSLLNQL++
Sbjct: 165 PGHILDNCPIKPPRPRSYSTSAKNFTKPRNSSVVAATLDNPTTPQFHISDLQSLLNQLIS 224

Query: 182 SSSSALVVTPVLQNPYPQFTLLMA 205
           SSSSAL V+ VL N Y  F LLMA
Sbjct: 225 SSSSALAVSSVLLNLYLPFMLLMA 248

[Close]

BLAST of PI0006047 vs. ExPASy TrEMBL
Match: A0A5A7SMD6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold340G00040 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 5.2e-71
Identity = 140/189 (74.07%), Postives = 162/189 (85.71%), Query Frame = 0


Query: 2   GQSVNEYLAVLQPIWTQLNQAKISADHLRLIKVLMGLCPEYESIQAALLHCNPLPSLDAS 61
           GQSVNEYLAVLQPIWTQL+QAKIS DHLRLIKVLMGL PEYES++AALLH +PLPSLDA+
Sbjct: 102 GQSVNEYLAVLQPIWTQLDQAKISKDHLRLIKVLMGLRPEYESVKAALLHRSPLPSLDAA 161

Query: 62  VQEILFEEKRLGIIPTKQSEVALASTHPPHGA-IPFCKNCKLSGHKYIECPKIECRYCHK 121
           +QEILFEEKRLGI  +K S+V LAST+ P GA   FCKNCKL+GHK+I+CPKIECRYCHK
Sbjct: 162 IQEILFEEKRLGINLSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIECRYCHK 221

Query: 122 HGHILDNCPTRPPRPPSYTTKSRNFTKFDTSSVAAATSSDTPPLNLQISDLQSLLNQLLA 181
            GHIL+NCP +PPRP SY+T+++NFTK   SSV AAT  +   L  QISDLQSLLNQL++
Sbjct: 222 RGHILNNCPIKPPRPRSYSTRAKNFTKPRNSSVVAATLDNPTTLQFQISDLQSLLNQLIS 281

Query: 182 SSSSALVVT 190
           SSSSAL V+
Sbjct: 282 SSSSALTVS 290

[Close]

BLAST of PI0006047 vs. ExPASy TrEMBL
Match: A0A1S3B566 (uncharacterized protein LOC103485923 OS=Cucumis melo OX=3656 GN=LOC103485923 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 5.2e-71
Identity = 140/189 (74.07%), Postives = 162/189 (85.71%), Query Frame = 0


Query: 2   GQSVNEYLAVLQPIWTQLNQAKISADHLRLIKVLMGLCPEYESIQAALLHCNPLPSLDAS 61
           GQSVNEYLAVLQPIWTQL+QAKIS DHLRLIKVLMGL PEYES++AALLH +PLPSLDA+
Sbjct: 102 GQSVNEYLAVLQPIWTQLDQAKISKDHLRLIKVLMGLRPEYESVKAALLHRSPLPSLDAA 161

Query: 62  VQEILFEEKRLGIIPTKQSEVALASTHPPHGA-IPFCKNCKLSGHKYIECPKIECRYCHK 121
           +QEILFEEKRLGI  +K S+V LAST+ P GA   FCKNCKL+GHK+I+CPKIECRYCHK
Sbjct: 162 IQEILFEEKRLGINLSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIECRYCHK 221

Query: 122 HGHILDNCPTRPPRPPSYTTKSRNFTKFDTSSVAAATSSDTPPLNLQISDLQSLLNQLLA 181
            GHIL+NCP +PPRP SY+T+++NFTK   SSV AAT  +   L  QISDLQSLLNQL++
Sbjct: 222 RGHILNNCPIKPPRPRSYSTRAKNFTKPRNSSVVAATLDNPTTLQFQISDLQSLLNQLIS 281

Query: 182 SSSSALVVT 190
           SSSSAL V+
Sbjct: 282 SSSSALTVS 290

[Close]

BLAST of PI0006047 vs. ExPASy TrEMBL
Match: A0A5A7VBM6 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G001110 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 4.4e-70
Identity = 139/189 (73.54%), Postives = 160/189 (84.66%), Query Frame = 0


Query: 2   GQSVNEYLAVLQPIWTQLNQAKISADHLRLIKVLMGLCPEYESIQAALLHCNPLPSLDAS 61
           GQSVNEYLAVLQPIWTQL+QAKIS DHLRLIKVLMGL PEYES++AALLH +PLPSLDA+
Sbjct: 336 GQSVNEYLAVLQPIWTQLDQAKISKDHLRLIKVLMGLPPEYESVRAALLHRSPLPSLDAA 395

Query: 62  VQEILFEEKRLGIIPTKQSEVALASTHPPHGA-IPFCKNCKLSGHKYIECPKIECRYCHK 121
           +QEILFEEKRLGI  +K S+V LAST+ P GA   FCKNCKL+GHK+I+CPKIECRYCHK
Sbjct: 396 IQEILFEEKRLGINLSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIECRYCHK 455

Query: 122 HGHILDNCPTRPPRPPSYTTKSRNFTKFDTSSVAAATSSDTPPLNLQISDLQSLLNQLLA 181
            GHILDNCP +PPRP SY+T+++NFTK    SV AAT  +      QISDLQSLLNQL++
Sbjct: 456 PGHILDNCPIKPPRPRSYSTRAKNFTKSRNFSVVAATLDNPTTPQFQISDLQSLLNQLIS 515

Query: 182 SSSSALVVT 190
           SSSSAL V+
Sbjct: 516 SSSSALAVS 524

[Close]

BLAST of PI0006047 vs. ExPASy TrEMBL
Match: A0A5D3CS71 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold663G00370 PE=4 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 7.5e-70
Identity = 138/190 (72.63%), Postives = 161/190 (84.74%), Query Frame = 0


Query: 2   GQSVNEYLAVLQPIWTQLNQAKISADHLRLIKVLMGLCPEYESIQAALLHCNPLPSLDAS 61
           GQSVNEYLAVLQPIWTQL+QA IS DHLRLIKVLMGL PEYES++AALLH +PLPSLDA+
Sbjct: 221 GQSVNEYLAVLQPIWTQLDQATISKDHLRLIKVLMGLRPEYESVRAALLHRSPLPSLDAT 280

Query: 62  VQEILFEEKRLGIIPTKQSEVALASTHPPHGA-IPFCKNCKLSGHKYIECPKIECRYCHK 121
           ++EILFEE+RLGI  +K S+V LAST+ P GA I FCKNCKL+GHK+I CPKIECRYCHK
Sbjct: 281 IKEILFEERRLGINLSKHSDVVLASTYSPPGASITFCKNCKLTGHKFINCPKIECRYCHK 340

Query: 122 HGHILDNCPTRPPRPPSYTTKSRNFTKFDTSSVAAATSSDTPPLNLQISDLQSLLNQLLA 181
            GHILDNCP +PPRP +Y+TK++NFTK + SS A A  + T P   QISDLQSLLN L++
Sbjct: 341 SGHILDNCPIKPPRPRNYSTKAKNFTKPNNSSAAVAPDNSTTP-QFQISDLQSLLNHLIS 400

Query: 182 SSSSALVVTP 191
           SSSSAL V+P
Sbjct: 401 SSSSALAVSP 409

[Close]

BLAST of PI0006047 vs. NCBI nr
Match: TYK21374.1 (Zinc finger, CCHC-type [Cucumis melo var. makuwa])

HSP 1 Score: 283.1 bits (723), Expect = 1.9e-72
Identity = 147/204 (72.06%), Postives = 167/204 (81.86%), Query Frame = 0


Query: 2   GQSVNEYLAVLQPIWTQLNQAKISADHLRLIKVLMGLCPEYESIQAALLHCNPLPSLDAS 61
           GQSVNEYLAVLQPIWTQL+QA IS DHLRLIKVLMGL PEYES++AALLH +PLPSLDA+
Sbjct: 45  GQSVNEYLAVLQPIWTQLDQANISKDHLRLIKVLMGLRPEYESVKAALLHRSPLPSLDAA 104

Query: 62  VQEILFEEKRLGIIPTKQSEVALASTHPPHGA-IPFCKNCKLSGHKYIECPKIECRYCHK 121
           +QEILFEEKRLGI  +K S+V LAST+ P GA   FCKNCKL+GHK+I+CPKIECRYCHK
Sbjct: 105 IQEILFEEKRLGINLSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIECRYCHK 164

Query: 122 HGHILDNCPTRPPRPPSYTTKSRNFTKFDTSSVAAATSSDTPPLNLQISDLQSLLNQLLA 181
            GHILDNCP +PPRP SY+T ++NFTK   SSV AAT  +       ISDLQSLLNQL++
Sbjct: 165 PGHILDNCPIKPPRPRSYSTSAKNFTKPRNSSVVAATLDNPTTPQFHISDLQSLLNQLIS 224

Query: 182 SSSSALVVTPVLQNPYPQFTLLMA 205
           SSSSAL V+ VL N Y  F LLMA
Sbjct: 225 SSSSALAVSSVLLNLYLPFMLLMA 248

[Close]

BLAST of PI0006047 vs. NCBI nr
Match: KAA0032344.1 (uncharacterized protein E6C27_scaffold219G002060 [Cucumis melo var. makuwa] >TYK31617.1 uncharacterized protein E5676_scaffold340G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 277.3 bits (708), Expect = 1.1e-70
Identity = 140/189 (74.07%), Postives = 162/189 (85.71%), Query Frame = 0


Query: 2   GQSVNEYLAVLQPIWTQLNQAKISADHLRLIKVLMGLCPEYESIQAALLHCNPLPSLDAS 61
           GQSVNEYLAVLQPIWTQL+QAKIS DHLRLIKVLMGL PEYES++AALLH +PLPSLDA+
Sbjct: 102 GQSVNEYLAVLQPIWTQLDQAKISKDHLRLIKVLMGLRPEYESVKAALLHRSPLPSLDAA 161

Query: 62  VQEILFEEKRLGIIPTKQSEVALASTHPPHGA-IPFCKNCKLSGHKYIECPKIECRYCHK 121
           +QEILFEEKRLGI  +K S+V LAST+ P GA   FCKNCKL+GHK+I+CPKIECRYCHK
Sbjct: 162 IQEILFEEKRLGINLSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIECRYCHK 221

Query: 122 HGHILDNCPTRPPRPPSYTTKSRNFTKFDTSSVAAATSSDTPPLNLQISDLQSLLNQLLA 181
            GHIL+NCP +PPRP SY+T+++NFTK   SSV AAT  +   L  QISDLQSLLNQL++
Sbjct: 222 RGHILNNCPIKPPRPRSYSTRAKNFTKPRNSSVVAATLDNPTTLQFQISDLQSLLNQLIS 281

Query: 182 SSSSALVVT 190
           SSSSAL V+
Sbjct: 282 SSSSALTVS 290

[Close]

BLAST of PI0006047 vs. NCBI nr
Match: XP_008441928.1 (PREDICTED: uncharacterized protein LOC103485923 [Cucumis melo])

HSP 1 Score: 277.3 bits (708), Expect = 1.1e-70
Identity = 140/189 (74.07%), Postives = 162/189 (85.71%), Query Frame = 0


Query: 2   GQSVNEYLAVLQPIWTQLNQAKISADHLRLIKVLMGLCPEYESIQAALLHCNPLPSLDAS 61
           GQSVNEYLAVLQPIWTQL+QAKIS DHLRLIKVLMGL PEYES++AALLH +PLPSLDA+
Sbjct: 102 GQSVNEYLAVLQPIWTQLDQAKISKDHLRLIKVLMGLRPEYESVKAALLHRSPLPSLDAA 161

Query: 62  VQEILFEEKRLGIIPTKQSEVALASTHPPHGA-IPFCKNCKLSGHKYIECPKIECRYCHK 121
           +QEILFEEKRLGI  +K S+V LAST+ P GA   FCKNCKL+GHK+I+CPKIECRYCHK
Sbjct: 162 IQEILFEEKRLGINLSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIECRYCHK 221

Query: 122 HGHILDNCPTRPPRPPSYTTKSRNFTKFDTSSVAAATSSDTPPLNLQISDLQSLLNQLLA 181
            GHIL+NCP +PPRP SY+T+++NFTK   SSV AAT  +   L  QISDLQSLLNQL++
Sbjct: 222 RGHILNNCPIKPPRPRSYSTRAKNFTKPRNSSVVAATLDNPTTLQFQISDLQSLLNQLIS 281

Query: 182 SSSSALVVT 190
           SSSSAL V+
Sbjct: 282 SSSSALTVS 290

[Close]

BLAST of PI0006047 vs. NCBI nr
Match: KAA0063009.1 (Integrase, catalytic core [Cucumis melo var. makuwa])

HSP 1 Score: 274.2 bits (700), Expect = 9.1e-70
Identity = 139/189 (73.54%), Postives = 160/189 (84.66%), Query Frame = 0


Query: 2   GQSVNEYLAVLQPIWTQLNQAKISADHLRLIKVLMGLCPEYESIQAALLHCNPLPSLDAS 61
           GQSVNEYLAVLQPIWTQL+QAKIS DHLRLIKVLMGL PEYES++AALLH +PLPSLDA+
Sbjct: 336 GQSVNEYLAVLQPIWTQLDQAKISKDHLRLIKVLMGLPPEYESVRAALLHRSPLPSLDAA 395

Query: 62  VQEILFEEKRLGIIPTKQSEVALASTHPPHGA-IPFCKNCKLSGHKYIECPKIECRYCHK 121
           +QEILFEEKRLGI  +K S+V LAST+ P GA   FCKNCKL+GHK+I+CPKIECRYCHK
Sbjct: 396 IQEILFEEKRLGINLSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIECRYCHK 455

Query: 122 HGHILDNCPTRPPRPPSYTTKSRNFTKFDTSSVAAATSSDTPPLNLQISDLQSLLNQLLA 181
            GHILDNCP +PPRP SY+T+++NFTK    SV AAT  +      QISDLQSLLNQL++
Sbjct: 456 PGHILDNCPIKPPRPRSYSTRAKNFTKSRNFSVVAATLDNPTTPQFQISDLQSLLNQLIS 515

Query: 182 SSSSALVVT 190
           SSSSAL V+
Sbjct: 516 SSSSALAVS 524

[Close]

BLAST of PI0006047 vs. NCBI nr
Match: KAA0046400.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 273.5 bits (698), Expect = 1.5e-69
Identity = 138/190 (72.63%), Postives = 161/190 (84.74%), Query Frame = 0


Query: 2   GQSVNEYLAVLQPIWTQLNQAKISADHLRLIKVLMGLCPEYESIQAALLHCNPLPSLDAS 61
           GQSVNEYLAVLQPIWTQL+QA IS DHLRLIKVLMGL PEYES++AALLH +PLPSLDA+
Sbjct: 221 GQSVNEYLAVLQPIWTQLDQATISKDHLRLIKVLMGLRPEYESVRAALLHRSPLPSLDAT 280

Query: 62  VQEILFEEKRLGIIPTKQSEVALASTHPPHGA-IPFCKNCKLSGHKYIECPKIECRYCHK 121
           ++EILFEE+RLGI  +K S+V LAST+ P GA I FCKNCKL+GHK+I CPKIECRYCHK
Sbjct: 281 IKEILFEERRLGINLSKHSDVVLASTYSPPGASITFCKNCKLTGHKFINCPKIECRYCHK 340

Query: 122 HGHILDNCPTRPPRPPSYTTKSRNFTKFDTSSVAAATSSDTPPLNLQISDLQSLLNQLLA 181
            GHILDNCP +PPRP +Y+TK++NFTK + SS A A  + T P   QISDLQSLLN L++
Sbjct: 341 SGHILDNCPIKPPRPRNYSTKAKNFTKPNNSSAAVAPDNSTTP-QFQISDLQSLLNHLIS 400

Query: 182 SSSSALVVTP 191
           SSSSAL V+P
Sbjct: 401 SSSSALAVSP 409

The following BLAST results are available for this feature:

BLAST of PI0006047 vs.


Match Name	E-value	Identity	Description

BLAST of PI0006047 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DCR3	9.4e-73	72.06	Zinc finger, CCHC-type OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold6...	[more]
A0A5A7SMD6	5.2e-71	74.07	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B566	5.2e-71	74.07	uncharacterized protein LOC103485923 OS=Cucumis melo OX=3656 GN=LOC103485923 PE=...	[more]
A0A5A7VBM6	4.4e-70	73.54	Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A5D3CS71	7.5e-70	72.63	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of PI0006047 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK21374.1	1.9e-72	72.06	Zinc finger, CCHC-type [Cucumis melo var. makuwa]	[more]
KAA0032344.1	1.1e-70	74.07	uncharacterized protein E6C27_scaffold219G002060 [Cucumis melo var. makuwa] >TYK...	[more]
XP_008441928.1	1.1e-70	74.07	PREDICTED: uncharacterized protein LOC103485923 [Cucumis melo]	[more]
KAA0063009.1	9.1e-70	73.54	Integrase, catalytic core [Cucumis melo var. makuwa]	[more]
KAA0046400.1	1.5e-69	72.63	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of PI0006047 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 96..112 e-value: 0.94 score: 11.4 coord: 114..130 e-value: 0.098 score: 17.4
None	No IPR available	GENE3D	4.10.60.10		coord: 77..135 e-value: 6.9E-7 score: 30.9
None	No IPR available	PANTHER	PTHR34222:SF36	SUBFAMILY NOT NAMED	coord: 35..191
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 35..191
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 91..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0006047.1	PI0006047.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0008270	zinc ion binding