PI0005987 (gene) Melon (PI 482460) v1

Overview
NamePI0005987
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Locationchr12: 21797091 .. 21797333 (+)
RNA-Seq ExpressionPI0005987
SyntenyPI0005987
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAGTTCTTCAAGAGCACCGAAACACACATGGACTAAAGAGGAAGAAGCAAAGTTGGTTGAGTGCTTGATGGAATTGGTTTCATCTGGTGGGTGGAGGTCAGATAATGGGACATTTCGACCTGGATACTCGACACAATTACAACGGATGATGGCAGAGAAGTTGCCCGACACTAACATCCAAGAATCTGAAGGGATTAAAACCCTTACACAGCGGAATAAATTCACAGAACCTTTTTAA

mRNA sequence

ATGACAAGTTCTTCAAGAGCACCGAAACACACATGGACTAAAGAGGAAGAAGCAAAGTTGGTTGAGTGCTTGATGGAATTGGTTTCATCTGGTGGGTGGAGGTCAGATAATGGGACATTTCGACCTGGATACTCGACACAATTACAACGGATGATGGCAGAGAAGTTGCCCGACACTAACATCCAAGAATCTGAAGGGATTAAAACCCTTACACAGCGGAATAAATTCACAGAACCTTTTTAA

Coding sequence (CDS)

ATGACAAGTTCTTCAAGAGCACCGAAACACACATGGACTAAAGAGGAAGAAGCAAAGTTGGTTGAGTGCTTGATGGAATTGGTTTCATCTGGTGGGTGGAGGTCAGATAATGGGACATTTCGACCTGGATACTCGACACAATTACAACGGATGATGGCAGAGAAGTTGCCCGACACTAACATCCAAGAATCTGAAGGGATTAAAACCCTTACACAGCGGAATAAATTCACAGAACCTTTTTAA

Protein sequence

MTSSSRAPKHTWTKEEEAKLVECLMELVSSGGWRSDNGTFRPGYSTQLQRMMAEKLPDTNIQESEGIKTLTQRNKFTEPF
Homology
BLAST of PI0005987 vs. ExPASy TrEMBL
Match: A0A5D3CQS4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold5G00390 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.1e-24
Identity = 58/67 (86.57%), Postives = 61/67 (91.04%), Query Frame = 0

Query: 1  MTSSSRAPKHTWTKEEEAKLVECLMELVSSGGWRSDNGTFRPGYSTQLQRMMAEKLPDTN 60
          M SSSRAPKHTWTKEEEAKLVECL+ELVS+GGWRS+NGTFRPGY  QLQRMMAEKLPDTN
Sbjct: 1  MASSSRAPKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFRPGYLAQLQRMMAEKLPDTN 60

Query: 61 IQESEGI 68
          IQ S  I
Sbjct: 61 IQGSPTI 67

BLAST of PI0005987 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.5e-23
Identity = 56/67 (83.58%), Postives = 58/67 (86.57%), Query Frame = 0

Query: 1  MTSSSRAPKHTWTKEEEAKLVECLMELVSSGGWRSDNGTFRPGYSTQLQRMMAEKLPDTN 60
          M S SRAPKHTWTKEEE K VECL+ELVSSGGWRSDNGTF+PGY  QLQRMMAEKLP TN
Sbjct: 1  MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60

Query: 61 IQESEGI 68
          IQES  I
Sbjct: 61 IQESSTI 67

BLAST of PI0005987 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.5e-23
Identity = 56/67 (83.58%), Postives = 58/67 (86.57%), Query Frame = 0

Query: 1  MTSSSRAPKHTWTKEEEAKLVECLMELVSSGGWRSDNGTFRPGYSTQLQRMMAEKLPDTN 60
          M S SRAPKHTWTKEEE K VECL+ELVSSGGWRSDNGTF+PGY  QLQRMMAEKLP TN
Sbjct: 1  MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60

Query: 61 IQESEGI 68
          IQES  I
Sbjct: 61 IQESSTI 67

BLAST of PI0005987 vs. ExPASy TrEMBL
Match: A0A5D3BZU3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00280 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.6e-23
Identity = 57/67 (85.07%), Postives = 59/67 (88.06%), Query Frame = 0

Query: 1  MTSSSRAPKHTWTKEEEAKLVECLMELVSSGGWRSDNGTFRPGYSTQLQRMMAEKLPDTN 60
          M SSSRA KH WTKEEEAKLVECL+ELVS+GGWRSDNGTFR GY TQLQRMMAEKLPDTN
Sbjct: 1  MASSSRATKHAWTKEEEAKLVECLVELVSAGGWRSDNGTFRHGYLTQLQRMMAEKLPDTN 60

Query: 61 IQESEGI 68
          IQ S  I
Sbjct: 61 IQGSPTI 67

BLAST of PI0005987 vs. ExPASy TrEMBL
Match: A0A5A7TJS2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold335G00710 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.2e-21
Identity = 53/64 (82.81%), Postives = 57/64 (89.06%), Query Frame = 0

Query: 1   MTSSSRAPKHTWTKEEEAKLVECLMELVSSGGWRSDNGTFRPGYSTQLQRMMAEKLPDTN 60
           MTSSSRA KHTWTKEEEAKLVECL+ELVS+GGWRS+NGTFR GY  QLQRMM +KL DTN
Sbjct: 172 MTSSSRASKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFRHGYLAQLQRMMVKKLSDTN 231

Query: 61  IQES 65
           IQ S
Sbjct: 232 IQGS 235

BLAST of PI0005987 vs. NCBI nr
Match: KAA0066605.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK14213.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 122.1 bits (305), Expect = 2.2e-24
Identity = 58/67 (86.57%), Postives = 61/67 (91.04%), Query Frame = 0

Query: 1  MTSSSRAPKHTWTKEEEAKLVECLMELVSSGGWRSDNGTFRPGYSTQLQRMMAEKLPDTN 60
          M SSSRAPKHTWTKEEEAKLVECL+ELVS+GGWRS+NGTFRPGY  QLQRMMAEKLPDTN
Sbjct: 1  MASSSRAPKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFRPGYLAQLQRMMAEKLPDTN 60

Query: 61 IQESEGI 68
          IQ S  I
Sbjct: 61 IQGSPTI 67

BLAST of PI0005987 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 118.2 bits (295), Expect = 3.2e-23
Identity = 56/67 (83.58%), Postives = 58/67 (86.57%), Query Frame = 0

Query: 1  MTSSSRAPKHTWTKEEEAKLVECLMELVSSGGWRSDNGTFRPGYSTQLQRMMAEKLPDTN 60
          M S SRAPKHTWTKEEE K VECL+ELVSSGGWRSDNGTF+PGY  QLQRMMAEKLP TN
Sbjct: 1  MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60

Query: 61 IQESEGI 68
          IQES  I
Sbjct: 61 IQESSTI 67

BLAST of PI0005987 vs. NCBI nr
Match: KAA0031678.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 117.5 bits (293), Expect = 5.4e-23
Identity = 57/67 (85.07%), Postives = 59/67 (88.06%), Query Frame = 0

Query: 1  MTSSSRAPKHTWTKEEEAKLVECLMELVSSGGWRSDNGTFRPGYSTQLQRMMAEKLPDTN 60
          M SSSRA KH WTKEEEAKLVECL+ELVS+GGWRSDNGTFR GY TQLQRMMAEKLPDTN
Sbjct: 1  MASSSRATKHAWTKEEEAKLVECLVELVSAGGWRSDNGTFRHGYLTQLQRMMAEKLPDTN 60

Query: 61 IQESEGI 68
          IQ S  I
Sbjct: 61 IQGSPTI 67

BLAST of PI0005987 vs. NCBI nr
Match: KAA0043564.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 110.5 bits (275), Expect = 6.6e-21
Identity = 53/64 (82.81%), Postives = 57/64 (89.06%), Query Frame = 0

Query: 1   MTSSSRAPKHTWTKEEEAKLVECLMELVSSGGWRSDNGTFRPGYSTQLQRMMAEKLPDTN 60
           MTSSSRA KHTWTKEEEAKLVECL+ELVS+GGWRS+NGTFR GY  QLQRMM +KL DTN
Sbjct: 172 MTSSSRASKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFRHGYLAQLQRMMVKKLSDTN 231

Query: 61  IQES 65
           IQ S
Sbjct: 232 IQGS 235

BLAST of PI0005987 vs. NCBI nr
Match: KAA0067707.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK21933.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 110.2 bits (274), Expect = 8.6e-21
Identity = 52/64 (81.25%), Postives = 57/64 (89.06%), Query Frame = 0

Query: 1  MTSSSRAPKHTWTKEEEAKLVECLMELVSSGGWRSDNGTFRPGYSTQLQRMMAEKLPDTN 60
          M SSSRA KHTWTKEEEA+L ECL+ELVS+GGWRS+NGTFRPGY  QLQRMMA+KLPDT 
Sbjct: 1  MESSSRASKHTWTKEEEAELAECLVELVSTGGWRSNNGTFRPGYLAQLQRMMAKKLPDTY 60

Query: 61 IQES 65
          IQ S
Sbjct: 61 IQGS 64

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CQS41.1e-2486.57Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U0H71.5e-2383.58Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3B4L31.5e-2383.58uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=... [more]
A0A5D3BZU32.6e-2385.07Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TJS23.2e-2182.81Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0066605.12.2e-2486.57retrotransposon protein [Cucumis melo var. makuwa] >TYK14213.1 retrotransposon p... [more]
XP_008441954.13.2e-2383.58PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret... [more]
KAA0031678.15.4e-2385.07retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon p... [more]
KAA0043564.16.6e-2182.81retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0067707.18.6e-2181.25retrotransposon protein [Cucumis melo var. makuwa] >TYK21933.1 retrotransposon p... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46250:SF3MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEINcoord: 3..64
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 3..64

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0005987.1PI0005987.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding