PI0005963 (gene) Melon (PI 482460) v1

Overview
NamePI0005963
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
Descriptionprotein POOR HOMOLOGOUS SYNAPSIS 1
Locationchr03: 202897 .. 204204 (-)
RNA-Seq ExpressionPI0005963
SyntenyPI0005963
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTATTGAAAGGAAAAGTATATCTTAACCATGTAATTGTCACTGTTATTGATTCTTGTATTTTCCCTTTTCATCCCCCTTGCTTTTTGTTTCATTATTATGCTTCTTTTCTCCAGATGACAGCAGGGCTTGCTCGTTCACAAATCTTTGCCTTATTTTCCAGGTTTCCTATTGCTCCTGCTTGTTTATTGAAAAAGCTTTGAAATCTTGAAAACTGTTTACATTTGATATAATTTTAAGACATCACCTTATTTTCCCAGGGTAGTGGTTCGAGTTCCCAATCCATTTTTTTTATTGTACTAATATAAATAGGTGTAAGGGCAGGTTATTGTATAAAGCAGGAGAAGGGTTGTTGGAAGAGGGAAGAATGGCGGAATTTGAAAGCTTGGTGCAGAACAATTAGTGTGCAGAGATGAGATCGGCTGCCATTAAGACCGGTGGGAAATACAATTCTATCGCTTTGTTTGTTATCCAAGTAGCACCTCCACCAGCACCAACCAGTGTGAAATACATCTGTATGTACCAATAAATTTGCCAGATACGAAATGTTTTTTCCGCTGAATGTTATACGTTTGCTTCTTTGGATTCCAAGATCTCTGTCCTTCATGCATAAATGAATTTCTTATTTCATTTCTTTAAATTCATGTGCTTTCTTATCAATTCCCTGAATTCAACCAGATCATATGTTAGACTCTAGCAGGAGTTGGTCTCTTGTATATGCTTTAATCTGCAGTTCAAGTGCAGCACCTTATATTGAGTTCAGTGGAATGATACAATATTATTCTATCAAAATACCAATGTAAAACTCCGTTTCTATTATTGGATGTGTTAATTGCACTGGAAGAAGCATGTCTTACATTTTGCATACTGATGTAGGAACAGCTGTATCTCCGGTTTTCTAGCCGGAGGCACCAGAACTATTTTTAGATTCAACTAATCAGGTAATTCGTAATATATTCATAAGATTTTGTCCATTCATGTGGTGCCATGGGGTTTGAAATGTAGTTTTCTGAGGATGAGTTTGAATTGTTGAACCTCACAAGTCACGAGGGCACTGTTTTTTTCTTGGCAGATCCAAAATTTGCCCTAAGATTTTCAACGTCCAAGGAAATCGAACCGCTTGTGAGCATTCACAAGGTATTTAATATGAATTCCTTTTATGTTGAGGTTTAATGGAAGCTGTTTCTATTCTAAAAGTGTTTTGCGGCTGTTATGCTATTCTCCTGCCTCAGCAAATGTCAAAGAAAGCAAGTGATATACAGCCAATAAGCTGCGACTTCAAGTCTCTGATTTCAGCACGCTAA

mRNA sequence

ATGGATGTATTGAAAGGAAAAGTATATCTTAACCATATGACAGCAGGGCTTGCTCGTTCACAAATCTTTGCCTTATTTTCCAGGTTATTGTATAAAGCAGGAGAAGGGTTGTTGGAAGAGGGAAGAATGGCGGAATTTGAAAGCTTGTTTTCTGAGGATGAGTTTGAATTGTTGAACCTCACAAGTCACGAGGGCACTGTTTTTTTCTTGGCAGATCCAAAATTTGCCCTAAGATTTTCAACGTCCAAGGAAATCGAACCGCTTGTGAGCATTCACAAGCAAATGTCAAAGAAAGCAAGTGATATACAGCCAATAAGCTGCGACTTCAAGTCTCTGATTTCAGCACGCTAA

Coding sequence (CDS)

ATGGATGTATTGAAAGGAAAAGTATATCTTAACCATATGACAGCAGGGCTTGCTCGTTCACAAATCTTTGCCTTATTTTCCAGGTTATTGTATAAAGCAGGAGAAGGGTTGTTGGAAGAGGGAAGAATGGCGGAATTTGAAAGCTTGTTTTCTGAGGATGAGTTTGAATTGTTGAACCTCACAAGTCACGAGGGCACTGTTTTTTTCTTGGCAGATCCAAAATTTGCCCTAAGATTTTCAACGTCCAAGGAAATCGAACCGCTTGTGAGCATTCACAAGCAAATGTCAAAGAAAGCAAGTGATATACAGCCAATAAGCTGCGACTTCAAGTCTCTGATTTCAGCACGCTAA

Protein sequence

MDVLKGKVYLNHMTAGLARSQIFALFSRLLYKAGEGLLEEGRMAEFESLFSEDEFELLNLTSHEGTVFFLADPKFALRFSTSKEIEPLVSIHKQMSKKASDIQPISCDFKSLISAR
Homology
[Close]
BLAST of PI0005963 vs. ExPASy TrEMBL
Match: A0A5A7V3H6 (Condensin-2 complex subunit H2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G002040 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.4e-14
Identity = 46/55 (83.64%), Postives = 48/55 (87.27%), Query Frame = 0 

Query: 62  SHEGTVFFLADPKFALRFSTSKEIEPLVSIHKQMSKKASDIQPISCDFKSLISAR 117
           SHEGTV FLADPKFA R STSKEIEPLVSI KQMS+KASDIQPISC FKS IS +
Sbjct: 669 SHEGTVLFLADPKFASRVSTSKEIEPLVSIVKQMSEKASDIQPISCSFKSRISTQ 723

[Close]
BLAST of PI0005963 vs. ExPASy TrEMBL
Match: A0A6J1KPK1 (protein POOR HOMOLOGOUS SYNAPSIS 1 OS=Cucurbita maxima OX=3661 GN=LOC111496445 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.7e-05
Identity = 31/42 (73.81%), Postives = 34/42 (80.95%), Query Frame = 0 

Query: 74  KFALRFSTSKEIEPLVSIHKQMSKKASDIQPISCDFKSLISA 116
           KFALRFSTS EI+  VSI K+MSK A DIQPISCDF S IS+
Sbjct: 141 KFALRFSTSCEIDSFVSILKEMSKDARDIQPISCDFGSQISS 182

[Close]
BLAST of PI0005963 vs. ExPASy TrEMBL
Match: A0A6J1GK72 (protein POOR HOMOLOGOUS SYNAPSIS 1 OS=Cucurbita moschata OX=3662 GN=LOC111454670 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.7e-05
Identity = 31/42 (73.81%), Postives = 34/42 (80.95%), Query Frame = 0 

Query: 74  KFALRFSTSKEIEPLVSIHKQMSKKASDIQPISCDFKSLISA 116
           KFALRFSTS EI+  VSI K+MSK A DIQPISCDF S IS+
Sbjct: 148 KFALRFSTSCEIDSFVSILKEMSKDARDIQPISCDFGSQISS 189

[Close]
BLAST of PI0005963 vs. NCBI nr
Match: KAA0061066.1 (condensin-2 complex subunit H2 [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 3.0e-14
Identity = 46/55 (83.64%), Postives = 48/55 (87.27%), Query Frame = 0 

Query: 62  SHEGTVFFLADPKFALRFSTSKEIEPLVSIHKQMSKKASDIQPISCDFKSLISAR 117
           SHEGTV FLADPKFA R STSKEIEPLVSI KQMS+KASDIQPISC FKS IS +
Sbjct: 669 SHEGTVLFLADPKFASRVSTSKEIEPLVSIVKQMSEKASDIQPISCSFKSRISTQ 723

[Close]
BLAST of PI0005963 vs. NCBI nr
Match: XP_022951934.1 (protein POOR HOMOLOGOUS SYNAPSIS 1 [Cucurbita moschata])

HSP 1 Score: 58.2 bits (139), Expect = 5.6e-05
Identity = 31/42 (73.81%), Postives = 34/42 (80.95%), Query Frame = 0 

Query: 74  KFALRFSTSKEIEPLVSIHKQMSKKASDIQPISCDFKSLISA 116
           KFALRFSTS EI+  VSI K+MSK A DIQPISCDF S IS+
Sbjct: 148 KFALRFSTSCEIDSFVSILKEMSKDARDIQPISCDFGSQISS 189

[Close]
BLAST of PI0005963 vs. NCBI nr
Match: XP_023002655.1 (protein POOR HOMOLOGOUS SYNAPSIS 1 [Cucurbita maxima])

HSP 1 Score: 58.2 bits (139), Expect = 5.6e-05
Identity = 31/42 (73.81%), Postives = 34/42 (80.95%), Query Frame = 0 

Query: 74  KFALRFSTSKEIEPLVSIHKQMSKKASDIQPISCDFKSLISA 116
           KFALRFSTS EI+  VSI K+MSK A DIQPISCDF S IS+
Sbjct: 141 KFALRFSTSCEIDSFVSILKEMSKDARDIQPISCDFGSQISS 182

[Close]
BLAST of PI0005963 vs. NCBI nr
Match: XP_023538055.1 (protein POOR HOMOLOGOUS SYNAPSIS 1 [Cucurbita pepo subsp. pepo] >XP_023538056.1 protein POOR HOMOLOGOUS SYNAPSIS 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 58.2 bits (139), Expect = 5.6e-05
Identity = 31/42 (73.81%), Postives = 34/42 (80.95%), Query Frame = 0 

Query: 74  KFALRFSTSKEIEPLVSIHKQMSKKASDIQPISCDFKSLISA 116
           KFALRFSTS EI+  VSI K+MSK A DIQPISCDF S IS+
Sbjct: 142 KFALRFSTSCEIDSFVSILKEMSKDARDIQPISCDFGSQISS 183

The following BLAST results are available for this feature:
BLAST of PI0005963 vs.
Match NameE-valueIdentityDescription
BLAST of PI0005963 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V3H61.4e-1483.64Condensin-2 complex subunit H2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A6J1KPK12.7e-0573.81protein POOR HOMOLOGOUS SYNAPSIS 1 OS=Cucurbita maxima OX=3661 GN=LOC111496445 P... [more]
A0A6J1GK722.7e-0573.81protein POOR HOMOLOGOUS SYNAPSIS 1 OS=Cucurbita moschata OX=3662 GN=LOC111454670... [more]
BLAST of PI0005963 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0061066.13.0e-1483.64condensin-2 complex subunit H2 [Cucumis melo var. makuwa][more]
XP_022951934.15.6e-0573.81protein POOR HOMOLOGOUS SYNAPSIS 1 [Cucurbita moschata][more]
XP_023002655.15.6e-0573.81protein POOR HOMOLOGOUS SYNAPSIS 1 [Cucurbita maxima][more]
XP_023538055.15.6e-0573.81protein POOR HOMOLOGOUS SYNAPSIS 1 [Cucurbita pepo subsp. pepo] >XP_023538056.1 ... [more]
BLAST of PI0005963 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0005963.1PI0005963.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030261 chromosome condensation
cellular_component GO:0005634 nucleus