PI0005910 (gene) Melon (PI 482460) v1

Overview


Name	PI0005910
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Pentatricopeptide repeat-containing protein
Location	chr11: 27623694 .. 27624124 (+)
RNA-Seq Expression	PI0005910
Synteny	PI0005910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGCAAAAAGTAGAGCGATTCATATGACAAGGAAGCTTTTTGAGATGATCAATAACTGCATGCAATAACATGGAATGCAATGATAGATGGGCATGGAACACATGGACTTGAAAAAGCTCCTCCTGATCTCATTGATAAAATGAAAAAAAAAGGAACAATAGAGCCAAATTATCTGGCATCTCTGCTTGCAGTCACTTAGGTTTGGTGGACGAAAGACTGCCATTTCAAGAGGATGAAAAAAGACCATGGATTGGAGGCTTCAAATGGATCACTACGGTGCTATGGCAGGATCAAAGAAGCCTGGGATTTTATAGAGAACATGCCTATTGGTCTAGGGATTACTGTATATGGTGCCACGTTGGGTGCTTGTAAAATTAAAAAAAAAAATGTTGAATTGGGAGAGAGCCTAACAAACTATTTGAGTTGA

mRNA sequence

ATGTATGCAAAAAGTAGAGCGATTCATATGACAAGGAAGCTTTTTGAGATGATCAATAACTACCATGGATTGGAGGCTTCAAATGGATCACTACGGTGCTATGGCAGGATCAAAGAAGCCTGGGATTTTATAGAGAACATGCCTATTGGTCTAGGGATTACTGTATATGGTGCCACGTTGGGTGCTTGTAAAATTAAAAAAAAAAATGTTGAATTGGGAGAGAGCCTAACAAACTATTTGAGTTGA

Coding sequence (CDS)

ATGTATGCAAAAAGTAGAGCGATTCATATGACAAGGAAGCTTTTTGAGATGATCAATAACTACCATGGATTGGAGGCTTCAAATGGATCACTACGGTGCTATGGCAGGATCAAAGAAGCCTGGGATTTTATAGAGAACATGCCTATTGGTCTAGGGATTACTGTATATGGTGCCACGTTGGGTGCTTGTAAAATTAAAAAAAAAAATGTTGAATTGGGAGAGAGCCTAACAAACTATTTGAGTTGA

Protein sequence

MYAKSRAIHMTRKLFEMINNYHGLEASNGSLRCYGRIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGESLTNYLS

Homology

[Close]

BLAST of PI0005910 vs. ExPASy Swiss-Prot
Match: Q3E6Q1 (Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H40 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 3.7e-06
Identity = 24/46 (52.17%), Postives = 28/46 (60.87%), Query Frame = 0


Query: 35  GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGESLTNYL 81
           GR+ EAWDFI  MP+   + VYGA LGAC+I  KNV   E     L
Sbjct: 589 GRLNEAWDFIMQMPVKPAVNVYGAMLGACQI-HKNVNFAEKAAERL 633

[Close]

BLAST of PI0005910 vs. ExPASy Swiss-Prot
Match: Q9CAY1 (Putative pentatricopeptide repeat-containing protein At3g11460, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H52 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.0e-04
Identity = 22/40 (55.00%), Postives = 29/40 (72.50%), Query Frame = 0


Query: 35  GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGE 75
           GR+ EA +FIE+MP+     V+GA LGACKI  KNV++ E
Sbjct: 408 GRLDEAMEFIESMPVEPDGAVWGALLGACKI-HKNVDMAE 446

[Close]

BLAST of PI0005910 vs. ExPASy Swiss-Prot
Match: Q9LTV8 (Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H43 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 4.5e-04
Identity = 20/40 (50.00%), Postives = 30/40 (75.00%), Query Frame = 0


Query: 35  GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGE 75
           G + +A++ I+ MP+  G+TV+GA L ACK K ++VELGE
Sbjct: 473 GHLDQAYEVIKCMPVQPGVTVWGALLSACK-KHRHVELGE 511

[Close]

BLAST of PI0005910 vs. ExPASy Swiss-Prot
Match: Q9LNP2 (Putative pentatricopeptide repeat-containing protein At1g17630 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E72 PE=3 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 7.7e-04
Identity = 24/77 (31.17%), Postives = 41/77 (53.25%), Query Frame = 0


Query: 12  RKLFEMINNYHGLEASNGSLRC-------YGRIKEAWDFIENMPIGLGITVYGATLGACK 71
           R++F  ++   GLE       C        G +KEA + ++NMP+   + V GA L +C+
Sbjct: 555 REIFYSMSKRFGLEPQQEHYACIVDLLGRVGFLKEASEIVKNMPMEPKVCVLGALLNSCR 614

Query: 72  IKKKNVELGESLTNYLS 82
           +  KNV++ E + + LS
Sbjct: 615 M-HKNVDIAEGIASQLS 630

[Close]

BLAST of PI0005910 vs. ExPASy TrEMBL
Match: A0A0A0KNU8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G180880 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.2e-13
Identity = 48/78 (61.54%), Postives = 49/78 (62.82%), Query Frame = 0


Query: 1  MYAKSRAIHMTRKLFEMINNYHGLEASNGSLRCYG---RIKEAWDFIENMPIGLGITVYG 60
          MYAK   IHMT    E    + G         CYG   RIKE WDFIENMPIGLGITVYG
Sbjct: 1  MYAKCGVIHMTSHNIECEGRWCGTP-------CYGRARRIKEVWDFIENMPIGLGITVYG 60

Query: 61 ATLGACKIKKKNVELGES 76
          ATLGAC I  KNVE GES
Sbjct: 61 ATLGACNI-HKNVESGES 70

[Close]

BLAST of PI0005910 vs. ExPASy TrEMBL
Match: A0A5D3CX30 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G003120 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.4e-10
Identity = 36/46 (78.26%), Postives = 36/46 (78.26%), Query Frame = 0


Query: 35  GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGESLTNYL 81
           GRIKEAWDFIENMPI  GITVYGA LGACKI  KNVE GE   N L
Sbjct: 601 GRIKEAWDFIENMPISPGITVYGAMLGACKI-HKNVEFGEKAANKL 645

[Close]

BLAST of PI0005910 vs. ExPASy TrEMBL
Match: A0A1S3BEJ2 (pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103488809 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.4e-10
Identity = 36/46 (78.26%), Postives = 36/46 (78.26%), Query Frame = 0


Query: 35  GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGESLTNYL 81
           GRIKEAWDFIENMPI  GITVYGA LGACKI  KNVE GE   N L
Sbjct: 601 GRIKEAWDFIENMPISPGITVYGAMLGACKI-HKNVEFGEKAANKL 645

[Close]

BLAST of PI0005910 vs. ExPASy TrEMBL
Match: A0A6J1CD18 (pentatricopeptide repeat-containing protein At1g11290, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111010091 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 7.5e-10
Identity = 35/46 (76.09%), Postives = 36/46 (78.26%), Query Frame = 0


Query: 35  GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGESLTNYL 81
           GRI EAWDFIENMP+  GITVYGA LGACKI  KNVELGE   N L
Sbjct: 607 GRINEAWDFIENMPVSPGITVYGAMLGACKI-HKNVELGEKAANRL 651

[Close]

BLAST of PI0005910 vs. ExPASy TrEMBL
Match: A0A6J1CEW2 (pentatricopeptide repeat-containing protein At1g11290, chloroplastic isoform X2 OS=Momordica charantia OX=3673 GN=LOC111010091 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 7.5e-10
Identity = 35/46 (76.09%), Postives = 36/46 (78.26%), Query Frame = 0


Query: 35  GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGESLTNYL 81
           GRI EAWDFIENMP+  GITVYGA LGACKI  KNVELGE   N L
Sbjct: 509 GRINEAWDFIENMPVSPGITVYGAMLGACKI-HKNVELGEKAANRL 553

[Close]

BLAST of PI0005910 vs. NCBI nr
Match: KGN50529.1 (hypothetical protein Csa_000167 [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 6.7e-13
Identity = 48/78 (61.54%), Postives = 49/78 (62.82%), Query Frame = 0


Query: 1  MYAKSRAIHMTRKLFEMINNYHGLEASNGSLRCYG---RIKEAWDFIENMPIGLGITVYG 60
          MYAK   IHMT    E    + G         CYG   RIKE WDFIENMPIGLGITVYG
Sbjct: 1  MYAKCGVIHMTSHNIECEGRWCGTP-------CYGRARRIKEVWDFIENMPIGLGITVYG 60

Query: 61 ATLGACKIKKKNVELGES 76
          ATLGAC I  KNVE GES
Sbjct: 61 ATLGACNI-HKNVESGES 70

[Close]

BLAST of PI0005910 vs. NCBI nr
Match: XP_023541274.1 (pentatricopeptide repeat-containing protein At1g11290, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 75.1 bits (183), Expect = 3.1e-10
Identity = 42/75 (56.00%), Postives = 46/75 (61.33%), Query Frame = 0


Query: 13  KLFEMINNYHGLEASNGS-------LRCYGRIKEAWDFIENMPIGLGITVYGATLGACKI 72
           + FE +   +GLE S          L   GRIKEAWDFIENMP+  GITVYGA LGACKI
Sbjct: 577 RYFESMKQDYGLEPSMDHYGVMVDLLGRAGRIKEAWDFIENMPVSPGITVYGAMLGACKI 636

Query: 73  KKKNVELGESLTNYL 81
             KNVE GE   N L
Sbjct: 637 -HKNVEFGEKSANKL 650

[Close]

BLAST of PI0005910 vs. NCBI nr
Match: XP_038891367.1 (pentatricopeptide repeat-containing protein At1g11290, chloroplastic [Benincasa hispida])

HSP 1 Score: 74.3 bits (181), Expect = 5.3e-10
Identity = 36/46 (78.26%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 35  GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGESLTNYL 81
           GRIKEAWDFI+NMPI  GITVYGA LGACKI  KNVELGE + N L
Sbjct: 607 GRIKEAWDFIKNMPISPGITVYGAMLGACKI-HKNVELGEKVANKL 651

[Close]

BLAST of PI0005910 vs. NCBI nr
Match: XP_008445930.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g11290, chloroplastic [Cucumis melo] >KAA0034113.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK15808.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 9.1e-10
Identity = 36/46 (78.26%), Postives = 36/46 (78.26%), Query Frame = 0


Query: 35  GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGESLTNYL 81
           GRIKEAWDFIENMPI  GITVYGA LGACKI  KNVE GE   N L
Sbjct: 601 GRIKEAWDFIENMPISPGITVYGAMLGACKI-HKNVEFGEKAANKL 645

[Close]

BLAST of PI0005910 vs. NCBI nr
Match: XP_022139093.1 (pentatricopeptide repeat-containing protein At1g11290, chloroplastic isoform X2 [Momordica charantia])

HSP 1 Score: 72.8 bits (177), Expect = 1.5e-09
Identity = 35/46 (76.09%), Postives = 36/46 (78.26%), Query Frame = 0


Query: 35  GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGESLTNYL 81
           GRI EAWDFIENMP+  GITVYGA LGACKI  KNVELGE   N L
Sbjct: 509 GRINEAWDFIENMPVSPGITVYGAMLGACKI-HKNVELGEKAANRL 553

[Close]

BLAST of PI0005910 vs. TAIR 10
Match: AT1G11290.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 52.0 bits (123), Expect = 2.6e-07
Identity = 24/46 (52.17%), Postives = 28/46 (60.87%), Query Frame = 0


Query: 35  GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGESLTNYL 81
           GR+ EAWDFI  MP+   + VYGA LGAC+I  KNV   E     L
Sbjct: 589 GRLNEAWDFIMQMPVKPAVNVYGAMLGACQI-HKNVNFAEKAAERL 633

[Close]

BLAST of PI0005910 vs. TAIR 10
Match: AT3G11460.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 46.2 bits (108), Expect = 1.4e-05
Identity = 22/40 (55.00%), Postives = 29/40 (72.50%), Query Frame = 0


Query: 35  GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGE 75
           GR+ EA +FIE+MP+     V+GA LGACKI  KNV++ E
Sbjct: 408 GRLDEAMEFIESMPVEPDGAVWGALLGACKI-HKNVDMAE 446

[Close]

BLAST of PI0005910 vs. TAIR 10
Match: AT3G12770.1 (mitochondrial editing factor 22 )

HSP 1 Score: 45.1 bits (105), Expect = 3.2e-05
Identity = 20/40 (50.00%), Postives = 30/40 (75.00%), Query Frame = 0


Query: 35  GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGE 75
           G + +A++ I+ MP+  G+TV+GA L ACK K ++VELGE
Sbjct: 473 GHLDQAYEVIKCMPVQPGVTVWGALLSACK-KHRHVELGE 511

[Close]

BLAST of PI0005910 vs. TAIR 10
Match: AT1G17630.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 44.3 bits (103), Expect = 5.5e-05
Identity = 24/77 (31.17%), Postives = 41/77 (53.25%), Query Frame = 0


Query: 12  RKLFEMINNYHGLEASNGSLRC-------YGRIKEAWDFIENMPIGLGITVYGATLGACK 71
           R++F  ++   GLE       C        G +KEA + ++NMP+   + V GA L +C+
Sbjct: 555 REIFYSMSKRFGLEPQQEHYACIVDLLGRVGFLKEASEIVKNMPMEPKVCVLGALLNSCR 614

Query: 72  IKKKNVELGESLTNYLS 82
           +  KNV++ E + + LS
Sbjct: 615 M-HKNVDIAEGIASQLS 630

[Close]

BLAST of PI0005910 vs. TAIR 10
Match: AT5G59200.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 43.1 bits (100), Expect = 1.2e-04
Identity = 22/46 (47.83%), Postives = 29/46 (63.04%), Query Frame = 0


Query: 35  GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKNVELGESLTNYL 81
           GR++EA+ FIEN+PI     + G  L ACKI   N+ELGE +   L
Sbjct: 406 GRLEEAYRFIENIPIEPDHIMLGTLLSACKI-HGNMELGEKIAKRL 450

The following BLAST results are available for this feature:

BLAST of PI0005910 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3E6Q1	3.7e-06	52.17	Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidop...	[more]
Q9CAY1	2.0e-04	55.00	Putative pentatricopeptide repeat-containing protein At3g11460, mitochondrial OS...	[more]
Q9LTV8	4.5e-04	50.00	Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana OX...	[more]
Q9LNP2	7.7e-04	31.17	Putative pentatricopeptide repeat-containing protein At1g17630 OS=Arabidopsis th...	[more]

BLAST of PI0005910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KNU8	3.2e-13	61.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G180880 PE=4 SV=1	[more]
A0A5D3CX30	4.4e-10	78.26	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3BEJ2	4.4e-10	78.26	pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Cucumis ...	[more]
A0A6J1CD18	7.5e-10	76.09	pentatricopeptide repeat-containing protein At1g11290, chloroplastic isoform X1 ...	[more]
A0A6J1CEW2	7.5e-10	76.09	pentatricopeptide repeat-containing protein At1g11290, chloroplastic isoform X2 ...	[more]

BLAST of PI0005910 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN50529.1	6.7e-13	61.54	hypothetical protein Csa_000167 [Cucumis sativus]	[more]
XP_023541274.1	3.1e-10	56.00	pentatricopeptide repeat-containing protein At1g11290, chloroplastic [Cucurbita ...	[more]
XP_038891367.1	5.3e-10	78.26	pentatricopeptide repeat-containing protein At1g11290, chloroplastic [Benincasa ...	[more]
XP_008445930.1	9.1e-10	78.26	PREDICTED: pentatricopeptide repeat-containing protein At1g11290, chloroplastic ...	[more]
XP_022139093.1	1.5e-09	76.09	pentatricopeptide repeat-containing protein At1g11290, chloroplastic isoform X2 ...	[more]

BLAST of PI0005910 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G11290.1	2.6e-07	52.17	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G11460.1	1.4e-05	55.00	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G12770.1	3.2e-05	50.00	mitochondrial editing factor 22	[more]
AT1G17630.1	5.5e-05	31.17	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT5G59200.1	1.2e-04	47.83	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR47928:SF126	OS06G0112000 PROTEIN	coord: 35..75
None	No IPR available	PANTHER	PTHR47928	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	coord: 35..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0005910.1	PI0005910.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
molecular_function	GO:0008270	zinc ion binding