PI0005885 (gene) Melon (PI 482460) v1

Overview


Name	PI0005885
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	rRNA adenine N(6)-methyltransferase
Location	chr07: 19335227 .. 19336080 (+)
RNA-Seq Expression	PI0005885
Synteny	PI0005885

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGGAGGCAAGATGAAGAAGGAGAAGCCAAAAGCAGGGGCGAAGAATGCAACACCATTCAGGGAGGGATTCCATTCCATAAATCCAAAGGTCAACATTCTCAAGAATCCCTTGCTTGTTGACTATAGTTCAAAAGTATGGAATTAAGAGCACCGATGTGATATTTATATGGTTCTCAAGTTGCAAAGACGATTTCAAGACAACTTACTCTTCTCGCCTGAAGGTAGATTCATTAATTGGTTATTTCTCATCAAATGTGTGGTTGTGCTTGATACTTAATTTGAGTTTGTTGAACTTGAATAAGAATTGACTAGTTCTTCAACTTGATGTGCTCAGGTTAGTTGGTCAACCTGGTGACAAACTTTACTGTCGTTTGACTATTCAACTCCTAGCTCGAGTGTCACACCTCCTCAAAGTTGGGAAGAACAACTTTCGTCCTCTACCTGAAGTGGACTAATCTATAGTTCGAATTGAGCTAAGAAAACCACATTTTGAAGTGAAACAGATGAAGTGGGATGAATTTTTTAAAACTTGTTTTAATCTAAAGAACAAAACTTTTGGTTCGATTTTTAAGCAAAAGAGTGCCATTTCTTTGCTAGAGAAGAAGTACAAAACATTTTGTGCACTTAATGTTCTTCAATAAGATTTTGCAGGTAATGATGATGGTAATTTTGATTATTTGAGATTTGACGATTCAAACGAGTATCAAACCATGGAAGTCGATGATGATGAAGATGACATAGGAGATGGATATGGAGGAAGGGGAGGGTTCTGAATTTAAGGGTAAAGTCATGGGTGTTTTGAAGGAGAGAGATTTTGAAGAAAAGAGGTCTTCTAAACTTACCTTATAA

mRNA sequence

ATGGCGGGAGGCAAGATGAAGAAGGAGAAGCCAAAAGCAGGGGCGAAGAATGCAACACCATTCAGGGAGGGATTCCATTCCATAAATCCAAAGGTCAACATTCTCAAGAATCCCTTGCTTGTTGACTATATTCTTCAACTTGATGTGCTCAGGTTAGTTGGTCAACCTGGTGACAAACTTTACTGTCGTTTGACTATTCAACTCCTAGCTCGAGTGTCACACCTCCTCAAAGTTGGGAAGAACAACTTTCTTCGAATTGAGCTAAGAAAACCACATTTTGAAGTGAAACAGATGAAGTGGGATGAATTTTTTAAAACTTGTTTTAATCTAAAGAACAAAACTTTTGGTTCGATTTTTAAGCAAAAGAGTGCCATTTCTTTGCTAGAGAAGAAGTACAAAACATTTTGTGCACTTAATGAGATGGATATGGAGGAAGGGGAGGGTTCTGAATTTAAGGGTAAAGTCATGGGTGTTTTGAAGGAGAGAGATTTTGAAGAAAAGAGGTCTTCTAAACTTACCTTATAA

Coding sequence (CDS)

ATGGCGGGAGGCAAGATGAAGAAGGAGAAGCCAAAAGCAGGGGCGAAGAATGCAACACCATTCAGGGAGGGATTCCATTCCATAAATCCAAAGGTCAACATTCTCAAGAATCCCTTGCTTGTTGACTATATTCTTCAACTTGATGTGCTCAGGTTAGTTGGTCAACCTGGTGACAAACTTTACTGTCGTTTGACTATTCAACTCCTAGCTCGAGTGTCACACCTCCTCAAAGTTGGGAAGAACAACTTTCTTCGAATTGAGCTAAGAAAACCACATTTTGAAGTGAAACAGATGAAGTGGGATGAATTTTTTAAAACTTGTTTTAATCTAAAGAACAAAACTTTTGGTTCGATTTTTAAGCAAAAGAGTGCCATTTCTTTGCTAGAGAAGAAGTACAAAACATTTTGTGCACTTAATGAGATGGATATGGAGGAAGGGGAGGGTTCTGAATTTAAGGGTAAAGTCATGGGTGTTTTGAAGGAGAGAGATTTTGAAGAAAAGAGGTCTTCTAAACTTACCTTATAA

Protein sequence

MAGGKMKKEKPKAGAKNATPFREGFHSINPKVNILKNPLLVDYILQLDVLRLVGQPGDKLYCRLTIQLLARVSHLLKVGKNNFLRIELRKPHFEVKQMKWDEFFKTCFNLKNKTFGSIFKQKSAISLLEKKYKTFCALNEMDMEEGEGSEFKGKVMGVLKERDFEEKRSSKLTL

Homology

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BLAST of PI0005885 vs. ExPASy Swiss-Prot
Match: O22268 (Ribosomal RNA small subunit methyltransferase OS=Arabidopsis thaliana OX=3702 GN=DIM1A PE=1 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 3.5e-30
Identity = 87/176 (49.43%), Postives = 102/176 (57.95%), Query Frame = 0


Query: 50  LRLVGQPGDKLYCRLTI--QLLARVSHLLKVGKNNF----------LRIELRKPHFEVKQ 109
           +RLV QPGD LYCRL++  QL ARVSHLLKVGKNNF          +RIE R+P  +V +
Sbjct: 159 MRLVAQPGDNLYCRLSVNTQLYARVSHLLKVGKNNFRPPPKVDSSVVRIEPRRPGPQVNK 218

Query: 110 MKWDEFFKTCFNLKNKTFGSIFKQKSAISLLEKKYKTFCAL------------------- 169
            +WD F + CF  KNKT GSIFKQKS +S+LEK +KT  A+                   
Sbjct: 219 KEWDGFLRVCFIRKNKTLGSIFKQKSVLSMLEKNFKTLQAVLASLQNNGEPALNTTSMDL 278

Query: 170 -----------NEMD-----MEEGEG-----SEFKGKVMGVLKERDFEEKRSSKLT 174
                      NEMD     M+EGEG     SEFK KVM VLKE  FEEKRSSKL+
Sbjct: 279 GDQSMGMEDDDNEMDDDDMEMDEGEGDGGETSEFKEKVMNVLKEGGFEEKRSSKLS 334

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BLAST of PI0005885 vs. ExPASy Swiss-Prot
Match: Q54QK7 (Probable dimethyladenosine transferase OS=Dictyostelium discoideum OX=44689 GN=dimt1 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.0e-21
Identity = 59/137 (43.07%), Postives = 80/137 (58.39%), Query Frame = 0


Query: 50  LRLVGQPGDKLYCRLTI--QLLARVSHLLKVGKNNFL----------RIELRKPHFEVKQ 109
           LRL  +PGD LYCRL++  QLL++V+HL+KVGKNNFL          RIE   P   +  
Sbjct: 160 LRLGAKPGDSLYCRLSVNTQLLSKVTHLMKVGKNNFLPPPKVESAVVRIEPFNPPPPINF 219

Query: 110 MKWDEFFKTCFNLKNKTFGSIFKQKSAISLLEKKYKTFCALNEMDMEEGEGSEFKGKVMG 169
           ++WD   K CF+ KNKT   IF+  S I  L + YKT+CAL      +G   + K  ++ 
Sbjct: 220 VEWDGLVKLCFSRKNKTLSGIFRVSSVIETLNQNYKTYCALEGKMNTDGSDEQMKELIIK 279

Query: 170 VLKERDFEEKRSSKLTL 175
            L + DF + RSSKL +
Sbjct: 280 TLTDNDFLDSRSSKLDI 296

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BLAST of PI0005885 vs. ExPASy Swiss-Prot
Match: Q6FKY3 (Dimethyladenosine transferase OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) OX=284593 GN=DIM1 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.7e-19
Identity = 65/187 (34.76%), Postives = 101/187 (54.01%), Query Frame = 0


Query: 1   MAGGKMKKEKPKAG-AKNATPFREGFHSINPKVNILKNPLLVDYILQLD-VLRLVGQPGD 60
           M G  MK E P      + TP++     +   +N  + P +   + Q +  +RL+ +PGD
Sbjct: 110 MLGDFMKTELPYFDICISNTPYQISSPLVFKLINQPRPPRVSILMFQREFAMRLLARPGD 169

Query: 61  KLYCRLT--IQLLARVSHLLKVGKNNF----------LRIELRKPHFEVKQMKWDEFFKT 120
            LYCRL+  +Q+ A V+H++KVG+NNF          +RIE++ P  ++   +WD   + 
Sbjct: 170 SLYCRLSANVQMWANVTHIMKVGRNNFRPPPQVESSVVRIEIKNPRPQIDFNEWDGLLRI 229

Query: 121 CFNLKNKTFGSIFKQKSAISLLEKKYKTFCALNEMDMEEGEG--SEFKGKVMGVLKERDF 172
            F  KN+T  + FK  + + +LEK YKTF A+N   ++E E   S  K K+  VLKE   
Sbjct: 230 VFVRKNRTISAGFKSTTVLEILEKNYKTFLAINNQSIDETENLQSLIKQKIETVLKETGL 289

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BLAST of PI0005885 vs. ExPASy Swiss-Prot
Match: P41819 (Dimethyladenosine transferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DIM1 PE=1 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.7e-19
Identity = 66/188 (35.11%), Postives = 103/188 (54.79%), Query Frame = 0


Query: 1   MAGGKMKKEKPKAG-AKNATPFREGFHSINPKVNILKNPLLVDYILQLD-VLRLVGQPGD 60
           M G  MK E P      + TP++     +   +N  + P +   + Q +  LRL+ +PGD
Sbjct: 110 MLGDFMKTELPYFDICISNTPYQISSPLVFKLINQPRPPRVSILMFQREFALRLLARPGD 169

Query: 61  KLYCRLT--IQLLARVSHLLKVGKNNF----------LRIELRKPHFEVKQMKWDEFFKT 120
            LYCRL+  +Q+ A V+H++KVGKNNF          +R+E++ P  +V   +WD   + 
Sbjct: 170 SLYCRLSANVQMWANVTHIMKVGKNNFRPPPQVESSVVRLEIKNPRPQVDYNEWDGLLRI 229

Query: 121 CFNLKNKTFGSIFKQKSAISLLEKKYKTFCALNEMDMEEGEGS---EFKGKVMGVLKERD 172
            F  KN+T  + FK  + + +LEK YKTF A+N   +++ +GS     K K+  VLKE D
Sbjct: 230 VFVRKNRTISAGFKSTTVMDILEKNYKTFLAMNNEMVDDTKGSMHDVVKEKIDTVLKETD 289

[Close]

BLAST of PI0005885 vs. ExPASy Swiss-Prot
Match: Q9USU2 (Dimethyladenosine transferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=dim1 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 5.3e-18
Identity = 54/134 (40.30%), Postives = 80/134 (59.70%), Query Frame = 0


Query: 50  LRLVGQPGDKLYCRLT--IQLLARVSHLLKVGKNNF----------LRIELRKPHFEVKQ 109
           LRLV +PGD LYCRL+  +Q+ A V H++KVGKNNF          +RIE + P   +  
Sbjct: 155 LRLVARPGDPLYCRLSANVQMWAHVKHIMKVGKNNFRPPPLVESSVVRIEPKNPPPPLAF 214

Query: 110 MKWDEFFKTCFNLKNKTFGSIFKQKSAISLLEKKYKTFCALNEMDMEEGEGSEFKGKVMG 169
            +WD   +  F  KNKT G+ FK  S I ++E  Y+T+C+ NE  +E  E  + K  + G
Sbjct: 215 EEWDGLLRIVFLRKNKTIGACFKTSSIIEMVENNYRTWCSQNERMVE--EDFDVKSLIDG 274

Query: 170 VLKERDFEEKRSSK 172
           VL++ + ++ R+SK
Sbjct: 275 VLQQCNLQDARASK 286

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BLAST of PI0005885 vs. ExPASy TrEMBL
Match: A0A5A7T0N9 (rRNA adenine N(6)-methyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1228G00080 PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 1.5e-39
Identity = 134/332 (40.36%), Postives = 149/332 (44.88%), Query Frame = 0


Query: 1   MAGGKMKKEKPKAGAKNATPFREG--FHSINPKVNILKNPLLVDYILQ------------ 60
           MAGGK+K+EKPKA AK ATP++ G  FH    + +ILKNPLLVD I+Q            
Sbjct: 1   MAGGKIKREKPKAAAKAATPYQGGISFHKSKGQ-HILKNPLLVDSIVQKSGIKSTDVILE 60

Query: 61  -----------------------LD----------------------------------- 120
                                  LD                                   
Sbjct: 61  IGPGTGNLTKKLLECGKMVIAVELDPRMVLELQRRFQDTPYSSRLKVIQGDVLKTELPYF 120

Query: 121 -------------------------------------VLRLVGQPGDKLYCRLTI--QLL 175
                                                 +RLV QPGDKLYCRLT+  QLL
Sbjct: 121 DICVANIPYQISSPLTFKLLNHQPAFRCAIIMFQREFAMRLVAQPGDKLYCRLTVNTQLL 180

[Close]

BLAST of PI0005885 vs. ExPASy TrEMBL
Match: A0A0A0LY97 (rRNA adenine N(6)-methyltransferase OS=Cucumis sativus OX=3659 GN=Csa_1G679560 PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 1.5e-39
Identity = 134/332 (40.36%), Postives = 149/332 (44.88%), Query Frame = 0


Query: 1   MAGGKMKKEKPKAGAKNATPFREG--FHSINPKVNILKNPLLVDYILQ------------ 60
           MAGGK++KEKPKA AK ATP++ G  FH    + +ILKNPLLVD I+Q            
Sbjct: 1   MAGGKIRKEKPKAAAKAATPYQGGISFHKSKGQ-HILKNPLLVDSIVQKSGIKSTDVILE 60

Query: 61  -----------------------LD----------------------------------- 120
                                  LD                                   
Sbjct: 61  IGPGTGNLTKKLLECGKMVIAVELDPRMVLELQRRFQDTPYSSRLKVIQGDVLKTELPYF 120

Query: 121 -------------------------------------VLRLVGQPGDKLYCRLTI--QLL 175
                                                 +RLV QPGDKLYCRLT+  QLL
Sbjct: 121 DICVANIPYQISSPLTFKLLNHQPAFRCAIIMFQREFAMRLVAQPGDKLYCRLTVNTQLL 180

[Close]

BLAST of PI0005885 vs. ExPASy TrEMBL
Match: A0A1S3B8X1 (rRNA adenine N(6)-methyltransferase OS=Cucumis melo OX=3656 GN=LOC103487290 PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 1.5e-39
Identity = 134/332 (40.36%), Postives = 149/332 (44.88%), Query Frame = 0


Query: 1   MAGGKMKKEKPKAGAKNATPFREG--FHSINPKVNILKNPLLVDYILQ------------ 60
           MAGGK+K+EKPKA AK ATP++ G  FH    + +ILKNPLLVD I+Q            
Sbjct: 1   MAGGKIKREKPKAAAKAATPYQGGISFHKSKGQ-HILKNPLLVDSIVQKSGIKSTDVILE 60

Query: 61  -----------------------LD----------------------------------- 120
                                  LD                                   
Sbjct: 61  IGPGTGNLTKKLLECGKMVIAVELDPRMVLELQRRFQDTPYSSRLKVIQGDVLKTELPYF 120

Query: 121 -------------------------------------VLRLVGQPGDKLYCRLTI--QLL 175
                                                 +RLV QPGDKLYCRLT+  QLL
Sbjct: 121 DICVANIPYQISSPLTFKLLNHQPAFRCAIIMFQREFAMRLVAQPGDKLYCRLTVNTQLL 180

[Close]

BLAST of PI0005885 vs. ExPASy TrEMBL
Match: A0A6J1K9W6 (rRNA adenine N(6)-methyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111492981 PE=3 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 1.5e-36
Identity = 99/181 (54.70%), Postives = 109/181 (60.22%), Query Frame = 0


Query: 50  LRLVGQPGDKLYCRLTI--QLLARVSHLLKVGKNNF----------LRIELRKPHFEVKQ 109
           +RLV QPGDKLYCRLT+  QLL+RVSHLLKVGKNNF          +RIE RKP  EVKQ
Sbjct: 157 MRLVAQPGDKLYCRLTVNTQLLSRVSHLLKVGKNNFRPPPKVDSSVVRIEPRKPRIEVKQ 216

Query: 110 MKWDEFFKTCFNLKNKTFGSIFKQKSAISLLEKKYKTFCALN------------------ 169
            +WD F + CFN KNKT GSIF+QKS +SLLEK YKT CALN                  
Sbjct: 217 KEWDGFLRICFNRKNKTLGSIFRQKSVLSLLEKNYKTLCALNIPQQGSADKDDGDFDYSR 276

Query: 170 -------------------EMDME-------EGEGSEFKGKVMGVLKERDFEEKRSSKLT 175
                              EMDM+       EGE SEFK KVMGVLKE DFEEKRSSKL+
Sbjct: 277 FGNSNEDQTMEVDDDGADEEMDMDGSDAEGGEGEASEFKDKVMGVLKEGDFEEKRSSKLS 336

[Close]

BLAST of PI0005885 vs. ExPASy TrEMBL
Match: A0A6J1GBX4 (rRNA adenine N(6)-methyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111452763 PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 3.4e-36
Identity = 98/181 (54.14%), Postives = 109/181 (60.22%), Query Frame = 0


Query: 50  LRLVGQPGDKLYCRLTI--QLLARVSHLLKVGKNNF----------LRIELRKPHFEVKQ 109
           +RLV QPGDKLYCRLT+  QLL+RVSHLLKVGKNNF          +RIE RKP  EVKQ
Sbjct: 157 MRLVAQPGDKLYCRLTVNTQLLSRVSHLLKVGKNNFRPPPKVDSSVVRIEPRKPRIEVKQ 216

Query: 110 MKWDEFFKTCFNLKNKTFGSIFKQKSAISLLEKKYKTFCALN------------------ 169
            +WD F + CFN KNKT GSIF+QKS +SLLEK YKT CALN                  
Sbjct: 217 KEWDGFLRICFNRKNKTLGSIFRQKSVLSLLEKNYKTLCALNIPQQGSADKDDGDFDYSR 276

Query: 170 -------------------EMDME-------EGEGSEFKGKVMGVLKERDFEEKRSSKLT 175
                              EMDM+       +GE SEFK KVMGVLKE DFEEKRSSKL+
Sbjct: 277 FGNLNEDQTMEVDDDGGDEEMDMDDSDAEGGDGEASEFKDKVMGVLKEGDFEEKRSSKLS 336

[Close]

BLAST of PI0005885 vs. NCBI nr
Match: XP_004142540.1 (ribosomal RNA small subunit methyltransferase [Cucumis sativus] >XP_011660265.1 ribosomal RNA small subunit methyltransferase [Cucumis sativus] >KGN66758.1 hypothetical protein Csa_007400 [Cucumis sativus])

HSP 1 Score: 172.6 bits (436), Expect = 3.1e-39
Identity = 134/332 (40.36%), Postives = 149/332 (44.88%), Query Frame = 0


Query: 1   MAGGKMKKEKPKAGAKNATPFREG--FHSINPKVNILKNPLLVDYILQ------------ 60
           MAGGK++KEKPKA AK ATP++ G  FH    + +ILKNPLLVD I+Q            
Sbjct: 1   MAGGKIRKEKPKAAAKAATPYQGGISFHKSKGQ-HILKNPLLVDSIVQKSGIKSTDVILE 60

Query: 61  -----------------------LD----------------------------------- 120
                                  LD                                   
Sbjct: 61  IGPGTGNLTKKLLECGKMVIAVELDPRMVLELQRRFQDTPYSSRLKVIQGDVLKTELPYF 120

Query: 121 -------------------------------------VLRLVGQPGDKLYCRLTI--QLL 175
                                                 +RLV QPGDKLYCRLT+  QLL
Sbjct: 121 DICVANIPYQISSPLTFKLLNHQPAFRCAIIMFQREFAMRLVAQPGDKLYCRLTVNTQLL 180

[Close]

BLAST of PI0005885 vs. NCBI nr
Match: XP_008443786.1 (PREDICTED: ribosomal RNA small subunit methyltransferase [Cucumis melo] >KAA0035147.1 ribosomal RNA small subunit methyltransferase [Cucumis melo var. makuwa] >TYK29222.1 ribosomal RNA small subunit methyltransferase [Cucumis melo var. makuwa])

HSP 1 Score: 172.6 bits (436), Expect = 3.1e-39
Identity = 134/332 (40.36%), Postives = 149/332 (44.88%), Query Frame = 0


Query: 1   MAGGKMKKEKPKAGAKNATPFREG--FHSINPKVNILKNPLLVDYILQ------------ 60
           MAGGK+K+EKPKA AK ATP++ G  FH    + +ILKNPLLVD I+Q            
Sbjct: 1   MAGGKIKREKPKAAAKAATPYQGGISFHKSKGQ-HILKNPLLVDSIVQKSGIKSTDVILE 60

Query: 61  -----------------------LD----------------------------------- 120
                                  LD                                   
Sbjct: 61  IGPGTGNLTKKLLECGKMVIAVELDPRMVLELQRRFQDTPYSSRLKVIQGDVLKTELPYF 120

Query: 121 -------------------------------------VLRLVGQPGDKLYCRLTI--QLL 175
                                                 +RLV QPGDKLYCRLT+  QLL
Sbjct: 121 DICVANIPYQISSPLTFKLLNHQPAFRCAIIMFQREFAMRLVAQPGDKLYCRLTVNTQLL 180

[Close]

BLAST of PI0005885 vs. NCBI nr
Match: XP_038877082.1 (ribosomal RNA small subunit methyltransferase [Benincasa hispida])

HSP 1 Score: 171.4 bits (433), Expect = 6.9e-39
Identity = 135/338 (39.94%), Postives = 148/338 (43.79%), Query Frame = 0


Query: 1   MAGGKMKKEKPKAGAKNATPFREG--FHSINPKVNILKNPLLVDYILQ------------ 60
           MAGGKMKKEKPKA AK A P++ G  FH    + +ILKNPLLVD I+Q            
Sbjct: 1   MAGGKMKKEKPKAAAKAAAPYQGGISFHKSKGQ-HILKNPLLVDSIIQKSGIKSTDVILE 60

Query: 61  -----------------------LD----------------------------------- 120
                                  LD                                   
Sbjct: 61  IGPGTGNLTKKLLECGKMVIAVELDPRMVLELQRRFQDTPYSSRLKVIQGDVLKTELPYF 120

Query: 121 -------------------------------------VLRLVGQPGDKLYCRLTI--QLL 175
                                                 +RLV QPGDKLYCRLT+  QLL
Sbjct: 121 DICVANIPYQISSPLTFKLLNHQPSFRCAIIMFQREFAMRLVAQPGDKLYCRLTVNTQLL 180

[Close]

BLAST of PI0005885 vs. NCBI nr
Match: XP_023525787.1 (ribosomal RNA small subunit methyltransferase [Cucurbita pepo subsp. pepo])

HSP 1 Score: 162.5 bits (410), Expect = 3.2e-36
Identity = 99/181 (54.70%), Postives = 109/181 (60.22%), Query Frame = 0


Query: 50  LRLVGQPGDKLYCRLTI--QLLARVSHLLKVGKNNF----------LRIELRKPHFEVKQ 109
           +RLV QPGDKLYCRLT+  QLL+RVSHLLKVGKNNF          +RIE RKP  EVKQ
Sbjct: 157 MRLVAQPGDKLYCRLTVNTQLLSRVSHLLKVGKNNFRPPPKVDSSVVRIEPRKPRIEVKQ 216

Query: 110 MKWDEFFKTCFNLKNKTFGSIFKQKSAISLLEKKYKTFCALN------------------ 169
            +WD F + CFN KNKT GSIF+QKS +SLLEK YKT CALN                  
Sbjct: 217 KEWDGFLRICFNRKNKTLGSIFRQKSVLSLLEKNYKTLCALNIPQQGSADKDDGDFDYSR 276

Query: 170 -------------------EMDME-------EGEGSEFKGKVMGVLKERDFEEKRSSKLT 175
                              EMDM+       EGE SEFK KVMGVLKE DFEEKRSSKL+
Sbjct: 277 FGNSNEDQTMEVDDDGGDEEMDMDDSDAEGGEGEASEFKDKVMGVLKEGDFEEKRSSKLS 336

[Close]

BLAST of PI0005885 vs. NCBI nr
Match: XP_022998306.1 (ribosomal RNA small subunit methyltransferase [Cucurbita maxima])

HSP 1 Score: 162.5 bits (410), Expect = 3.2e-36
Identity = 99/181 (54.70%), Postives = 109/181 (60.22%), Query Frame = 0


Query: 50  LRLVGQPGDKLYCRLTI--QLLARVSHLLKVGKNNF----------LRIELRKPHFEVKQ 109
           +RLV QPGDKLYCRLT+  QLL+RVSHLLKVGKNNF          +RIE RKP  EVKQ
Sbjct: 157 MRLVAQPGDKLYCRLTVNTQLLSRVSHLLKVGKNNFRPPPKVDSSVVRIEPRKPRIEVKQ 216

Query: 110 MKWDEFFKTCFNLKNKTFGSIFKQKSAISLLEKKYKTFCALN------------------ 169
            +WD F + CFN KNKT GSIF+QKS +SLLEK YKT CALN                  
Sbjct: 217 KEWDGFLRICFNRKNKTLGSIFRQKSVLSLLEKNYKTLCALNIPQQGSADKDDGDFDYSR 276

Query: 170 -------------------EMDME-------EGEGSEFKGKVMGVLKERDFEEKRSSKLT 175
                              EMDM+       EGE SEFK KVMGVLKE DFEEKRSSKL+
Sbjct: 277 FGNSNEDQTMEVDDDGADEEMDMDGSDAEGGEGEASEFKDKVMGVLKEGDFEEKRSSKLS 336

[Close]

BLAST of PI0005885 vs. TAIR 10
Match: AT2G47420.1 (Ribosomal RNA adenine dimethylase family protein )

HSP 1 Score: 132.9 bits (333), Expect = 2.5e-31
Identity = 87/176 (49.43%), Postives = 102/176 (57.95%), Query Frame = 0


Query: 50  LRLVGQPGDKLYCRLTI--QLLARVSHLLKVGKNNF----------LRIELRKPHFEVKQ 109
           +RLV QPGD LYCRL++  QL ARVSHLLKVGKNNF          +RIE R+P  +V +
Sbjct: 159 MRLVAQPGDNLYCRLSVNTQLYARVSHLLKVGKNNFRPPPKVDSSVVRIEPRRPGPQVNK 218

Query: 110 MKWDEFFKTCFNLKNKTFGSIFKQKSAISLLEKKYKTFCAL------------------- 169
            +WD F + CF  KNKT GSIFKQKS +S+LEK +KT  A+                   
Sbjct: 219 KEWDGFLRVCFIRKNKTLGSIFKQKSVLSMLEKNFKTLQAVLASLQNNGEPALNTTSMDL 278

Query: 170 -----------NEMD-----MEEGEG-----SEFKGKVMGVLKERDFEEKRSSKLT 174
                      NEMD     M+EGEG     SEFK KVM VLKE  FEEKRSSKL+
Sbjct: 279 GDQSMGMEDDDNEMDDDDMEMDEGEGDGGETSEFKEKVMNVLKEGGFEEKRSSKLS 334

[Close]

BLAST of PI0005885 vs. TAIR 10
Match: AT5G66360.2 (Ribosomal RNA adenine dimethylase family protein )

HSP 1 Score: 58.5 bits (140), Expect = 6.0e-09
Identity = 48/156 (30.77%), Postives = 73/156 (46.79%), Query Frame = 0


Query: 51  RLVGQPGDKLYCRL--TIQLLARVSHLLKVGKNNF----------LRIELRKPHFEVKQM 110
           RL+  PGD  + RL   ++L+A V  ++ V K  F          +RI  ++   +V   
Sbjct: 195 RLLANPGDSDFNRLAVNVKLVADVKFVMDVSKREFVPPPKVDSSVIRITPKEIIPDVNVQ 254

Query: 111 KWDEFFKTCFNLKNKTFGSIFKQKSAISLLEKKYKTFCALN-----------EMDMEEG- 170
           +W  F +TCF  KNKT GS+F+QK  +  L+         N           + D+EE  
Sbjct: 255 EWLAFTRTCFGKKNKTLGSMFRQKKKVMELQSLSAGRHGSNVEVMNQTGGDSDSDVEEDG 314

Query: 171 ---------EGSEFKGKVMGVLKERDFEEKRSSKLT 174
                    + S FK +V+ +L+   FEEKR SKL+
Sbjct: 315 KDDLLCLDTDASMFKERVIEILRTNGFEEKRPSKLS 350

[Close]

BLAST of PI0005885 vs. TAIR 10
Match: AT5G66360.1 (Ribosomal RNA adenine dimethylase family protein )

HSP 1 Score: 49.7 bits (117), Expect = 2.8e-06
Identity = 40/144 (27.78%), Postives = 61/144 (42.36%), Query Frame = 0


Query: 51  RLVGQPGDKLYCRLTIQLLARVSHLLKVGKNNFLRIELRKPHFEVKQMKWDEFFKTCFNL 110
           RL+  PGD  + RL + +      ++                 +V   +W  F +TCF  
Sbjct: 195 RLLANPGDSDFNRLAVNVKITPKEIIP----------------DVNVQEWLAFTRTCFGK 254

Query: 111 KNKTFGSIFKQKSAISLLEKKYKTFCALN-----------EMDMEEG----------EGS 170
           KNKT GS+F+QK  +  L+         N           + D+EE           + S
Sbjct: 255 KNKTLGSMFRQKKKVMELQSLSAGRHGSNVEVMNQTGGDSDSDVEEDGKDDLLCLDTDAS 314

Query: 171 EFKGKVMGVLKERDFEEKRSSKLT 174
            FK +V+ +L+   FEEKR SKL+
Sbjct: 315 MFKERVIEILRTNGFEEKRPSKLS 322

The following BLAST results are available for this feature:

BLAST of PI0005885 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22268	3.5e-30	49.43	Ribosomal RNA small subunit methyltransferase OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q54QK7	1.0e-21	43.07	Probable dimethyladenosine transferase OS=Dictyostelium discoideum OX=44689 GN=d...	[more]
Q6FKY3	3.7e-19	34.76	Dimethyladenosine transferase OS=Candida glabrata (strain ATCC 2001 / CBS 138 / ...	[more]
P41819	3.7e-19	35.11	Dimethyladenosine transferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / ...	[more]
Q9USU2	5.3e-18	40.30	Dimethyladenosine transferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of PI0005885 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T0N9	1.5e-39	40.36	rRNA adenine N(6)-methyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A0A0LY97	1.5e-39	40.36	rRNA adenine N(6)-methyltransferase OS=Cucumis sativus OX=3659 GN=Csa_1G679560 P...	[more]
A0A1S3B8X1	1.5e-39	40.36	rRNA adenine N(6)-methyltransferase OS=Cucumis melo OX=3656 GN=LOC103487290 PE=3...	[more]
A0A6J1K9W6	1.5e-36	54.70	rRNA adenine N(6)-methyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111492981 ...	[more]
A0A6J1GBX4	3.4e-36	54.14	rRNA adenine N(6)-methyltransferase OS=Cucurbita moschata OX=3662 GN=LOC11145276...	[more]

BLAST of PI0005885 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004142540.1	3.1e-39	40.36	ribosomal RNA small subunit methyltransferase [Cucumis sativus] >XP_011660265.1 ...	[more]
XP_008443786.1	3.1e-39	40.36	PREDICTED: ribosomal RNA small subunit methyltransferase [Cucumis melo] >KAA0035...	[more]
XP_038877082.1	6.9e-39	39.94	ribosomal RNA small subunit methyltransferase [Benincasa hispida]	[more]
XP_023525787.1	3.2e-36	54.70	ribosomal RNA small subunit methyltransferase [Cucurbita pepo subsp. pepo]	[more]
XP_022998306.1	3.2e-36	54.70	ribosomal RNA small subunit methyltransferase [Cucurbita maxima]	[more]

BLAST of PI0005885 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47420.1	2.5e-31	49.43	Ribosomal RNA adenine dimethylase family protein	[more]
AT5G66360.2	6.0e-09	30.77	Ribosomal RNA adenine dimethylase family protein	[more]
AT5G66360.1	2.8e-06	27.78	Ribosomal RNA adenine dimethylase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.8.480		coord: 93..174 e-value: 6.6E-21 score: 76.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR11727:SF7	DIMETHYLADENOSINE TRANSFERASE-RELATED	coord: 49..173
IPR001737	Ribosomal RNA adenine methyltransferase KsgA/Erm	PANTHER	PTHR11727	DIMETHYLADENOSINE TRANSFERASE	coord: 49..173
IPR029063	S-adenosyl-L-methionine-dependent methyltransferase	SUPERFAMILY	53335	S-adenosyl-L-methionine-dependent methyltransferases	coord: 41..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0005885.1	PI0005885.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0008168	methyltransferase activity