PI0005848 (gene) Melon (PI 482460) v1

Overview


Name	PI0005848
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr08: 5967063 .. 5967620 (-)
RNA-Seq Expression	PI0005848
Synteny	PI0005848

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTCATCTGGTGGATGGAGGTCAGATAATGAGATATTTCGACCTGGATACTTGGCACAATTACAACGGATGATGGCGGAGAAGTTGTTTGGTACTAACATCCAAAGATCGCTGACTATTGATTGCCGTGTCAAATCCCTTAAAAAAACCTATCAAGCAATTGCAGAAATGAGGGGATCATTCTGTAGTGGGTTTGATGGAATGAAGAATTTCAATGCATCATTGCAGAACGGGAGTTGTTTGATAGTTGGGTCAAGGTACAATTTTTGACAAAAAGTTTGATCTACTTTCGAAATCACAACCATCAACTAATCTGTCTGTTTGATGTTTGTACAGAGTCATCCTACGACCAAAGGACTTTTACACAAATCATTTCCATATTATGACGATCTGTCGTATGTCTTCGACAGAGATCAAGCAACAGGAGCACGTGCGGAGACCTTTGCTGACGTGGGATCTAATGTGTCAAATTGTTTTAATGACGATGTTCCACTTGGCTATACATCCCGACGATGTATAGCCAAGGAGTGGATATGTCACCAGATGACATGTTAG

mRNA sequence

ATGGTTTCATCTGGTGGATGGAGGTCAGATAATGAGATATTTCGACCTGGATACTTGGCACAATTACAACGGATGATGGCGGAGAAGTTGTTTGGTACTAACATCCAAAGATCGCTGACTATTGATTGCCGTGTCAAATCCCTTAAAAAAACCTATCAAGCAATTGCAGAAATGAGGGGATCATTCTGTAGTGGGTTTGATGGAATGAAGAATTTCAATGCATCATTGCAGAACGGGAGTTGTTTGATAGTTGGGTCAAGAGATCAAGCAACAGGAGCACGTGCGGAGACCTTTGCTGACGTGGGATCTAATGTGTCAAATTGTTTTAATGACGATGTTCCACTTGGCTATACATCCCGACGATGTATAGCCAAGGAGTGGATATGTCACCAGATGACATGTTAG

Coding sequence (CDS)

ATGGTTTCATCTGGTGGATGGAGGTCAGATAATGAGATATTTCGACCTGGATACTTGGCACAATTACAACGGATGATGGCGGAGAAGTTGTTTGGTACTAACATCCAAAGATCGCTGACTATTGATTGCCGTGTCAAATCCCTTAAAAAAACCTATCAAGCAATTGCAGAAATGAGGGGATCATTCTGTAGTGGGTTTGATGGAATGAAGAATTTCAATGCATCATTGCAGAACGGGAGTTGTTTGATAGTTGGGTCAAGAGATCAAGCAACAGGAGCACGTGCGGAGACCTTTGCTGACGTGGGATCTAATGTGTCAAATTGTTTTAATGACGATGTTCCACTTGGCTATACATCCCGACGATGTATAGCCAAGGAGTGGATATGTCACCAGATGACATGTTAG

Protein sequence

MVSSGGWRSDNEIFRPGYLAQLQRMMAEKLFGTNIQRSLTIDCRVKSLKKTYQAIAEMRGSFCSGFDGMKNFNASLQNGSCLIVGSRDQATGARAETFADVGSNVSNCFNDDVPLGYTSRRCIAKEWICHQMTC

Homology

[Close]

BLAST of PI0005848 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.6e-31
Identity = 79/141 (56.03%), Postives = 88/141 (62.41%), Query Frame = 0


Query: 1   MVSSGGWRSDNEIFRPGYLAQLQRMMAEKLFGTNIQRSLTIDCRVKSLKKTYQAIAEMRG 60
           +VSSGGWRSDN  F+PGYLAQLQRMMAEKL GTNIQ S TIDC VKSLKKTY AIAEMRG
Sbjct: 27  LVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTNIQESSTIDCHVKSLKKTYHAIAEMRG 86

Query: 61  SFCSGFDGMKNFNASLQNGSCL-------------------------IVGSRDQATGARA 117
             CSGF   + F   +                                V  +D+ATGAR+
Sbjct: 87  PSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLLHKSFPYYDDLSYVFGKDRATGARS 146

[Close]

BLAST of PI0005848 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.6e-31
Identity = 79/141 (56.03%), Postives = 88/141 (62.41%), Query Frame = 0


Query: 1   MVSSGGWRSDNEIFRPGYLAQLQRMMAEKLFGTNIQRSLTIDCRVKSLKKTYQAIAEMRG 60
           +VSSGGWRSDN  F+PGYLAQLQRMMAEKL GTNIQ S TIDC VKSLKKTY AIAEMRG
Sbjct: 27  LVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTNIQESSTIDCHVKSLKKTYHAIAEMRG 86

Query: 61  SFCSGFDGMKNFNASLQNGSCL-------------------------IVGSRDQATGARA 117
             CSGF   + F   +                                V  +D+ATGAR+
Sbjct: 87  PSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLLHKSFPYYDDLSYVFGKDRATGARS 146

[Close]

BLAST of PI0005848 vs. ExPASy TrEMBL
Match: A0A5A7TJS2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold335G00710 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 2.0e-23
Identity = 69/141 (48.94%), Postives = 79/141 (56.03%), Query Frame = 0


Query: 1   MVSSGGWRSDNEIFRPGYLAQLQRMMAEKLFGTNIQRSLTIDCRVKSLKKTYQAIAEMRG 60
           +VS+GGWRS+N  FR GYLAQLQRMM +KL  TNIQ SL +DCRVKSLKK   +   MRG
Sbjct: 198 LVSAGGWRSNNGTFRHGYLAQLQRMMVKKLSDTNIQGSLPMDCRVKSLKKHLPSNFRMRG 257

Query: 61  SFCSGFDGMKNFNASLQNGSCL-------------------------IVGSRDQATGARA 117
             CSGF   + F   +                                V  +D+AT AR 
Sbjct: 258 PSCSGFGWNEKFQCIIAERDLFDNWVKSHPTAEGLLHKSFPYYDDLSYVFDKDRATEARL 317

[Close]

BLAST of PI0005848 vs. ExPASy TrEMBL
Match: A0A5A7V2H6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G003650 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 7.5e-23
Identity = 62/110 (56.36%), Postives = 72/110 (65.45%), Query Frame = 0


Query: 1   MVSSGGWRSDNEIFRPGYLAQLQRMMAEKLFGTNIQRSLTIDCRVKSLKKTYQAIAEMRG 60
           +VS GGW+SDN  FRPGYLAQL RMM EKL G  ++ +  IDCR+K+L +T+QAI EMRG
Sbjct: 3   LVSMGGWKSDNGTFRPGYLAQLVRMMGEKLSGCQVRATTVIDCRIKTLNRTFQAIVEMRG 62

Query: 61  SFCSGFDGMKNFNASLQNGS------CLIVGSRDQATGARAETFADVGSN 105
           S CSGF         L N S         V  RD+ATG  AETFADVGSN
Sbjct: 63  SACSGFGWNDEEKFGLLNESFSYYDELTYVFDRDRATGRFAETFADVGSN 112

[Close]

BLAST of PI0005848 vs. ExPASy TrEMBL
Match: A0A5D3D8J6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold307G00030 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 7.5e-23
Identity = 68/141 (48.23%), Postives = 79/141 (56.03%), Query Frame = 0


Query: 1   MVSSGGWRSDNEIFRPGYLAQLQRMMAEKLFGTNIQRSLTIDCRVKSLKKTYQAIAEMRG 60
           +VS+GGWRS+N  FR GYLAQLQRMM +KL  TNIQ SL +DCRVKSLKK   +   +RG
Sbjct: 198 LVSAGGWRSNNGTFRLGYLAQLQRMMVKKLSDTNIQGSLPMDCRVKSLKKHLPSNFRIRG 257

Query: 61  SFCSGFDGMKNFNASLQNGSCL-------------------------IVGSRDQATGARA 117
             CSGF   + F   +                                V  +D+AT AR 
Sbjct: 258 PSCSGFGWNEKFQCIIAERDLFDNWVKSHPTAEGLLHKSFPYYDDLSYVFDKDRATEARL 317

[Close]

BLAST of PI0005848 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 144.8 bits (364), Expect = 5.3e-31
Identity = 79/141 (56.03%), Postives = 88/141 (62.41%), Query Frame = 0


Query: 1   MVSSGGWRSDNEIFRPGYLAQLQRMMAEKLFGTNIQRSLTIDCRVKSLKKTYQAIAEMRG 60
           +VSSGGWRSDN  F+PGYLAQLQRMMAEKL GTNIQ S TIDC VKSLKKTY AIAEMRG
Sbjct: 27  LVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTNIQESSTIDCHVKSLKKTYHAIAEMRG 86

Query: 61  SFCSGFDGMKNFNASLQNGSCL-------------------------IVGSRDQATGARA 117
             CSGF   + F   +                                V  +D+ATGAR+
Sbjct: 87  PSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLLHKSFPYYDDLSYVFGKDRATGARS 146

[Close]

BLAST of PI0005848 vs. NCBI nr
Match: KAA0043564.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 118.6 bits (296), Expect = 4.1e-23
Identity = 69/141 (48.94%), Postives = 79/141 (56.03%), Query Frame = 0


Query: 1   MVSSGGWRSDNEIFRPGYLAQLQRMMAEKLFGTNIQRSLTIDCRVKSLKKTYQAIAEMRG 60
           +VS+GGWRS+N  FR GYLAQLQRMM +KL  TNIQ SL +DCRVKSLKK   +   MRG
Sbjct: 198 LVSAGGWRSNNGTFRHGYLAQLQRMMVKKLSDTNIQGSLPMDCRVKSLKKHLPSNFRMRG 257

Query: 61  SFCSGFDGMKNFNASLQNGSCL-------------------------IVGSRDQATGARA 117
             CSGF   + F   +                                V  +D+AT AR 
Sbjct: 258 PSCSGFGWNEKFQCIIAERDLFDNWVKSHPTAEGLLHKSFPYYDDLSYVFDKDRATEARL 317

[Close]

BLAST of PI0005848 vs. NCBI nr
Match: KAA0062283.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK26703.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 116.7 bits (291), Expect = 1.5e-22
Identity = 62/110 (56.36%), Postives = 72/110 (65.45%), Query Frame = 0


Query: 1   MVSSGGWRSDNEIFRPGYLAQLQRMMAEKLFGTNIQRSLTIDCRVKSLKKTYQAIAEMRG 60
           +VS GGW+SDN  FRPGYLAQL RMM EKL G  ++ +  IDCR+K+L +T+QAI EMRG
Sbjct: 3   LVSMGGWKSDNGTFRPGYLAQLVRMMGEKLSGCQVRATTVIDCRIKTLNRTFQAIVEMRG 62

Query: 61  SFCSGFDGMKNFNASLQNGS------CLIVGSRDQATGARAETFADVGSN 105
           S CSGF         L N S         V  RD+ATG  AETFADVGSN
Sbjct: 63  SACSGFGWNDEEKFGLLNESFSYYDELTYVFDRDRATGRFAETFADVGSN 112

[Close]

BLAST of PI0005848 vs. NCBI nr
Match: TYK19779.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 116.7 bits (291), Expect = 1.5e-22
Identity = 68/141 (48.23%), Postives = 79/141 (56.03%), Query Frame = 0


Query: 1   MVSSGGWRSDNEIFRPGYLAQLQRMMAEKLFGTNIQRSLTIDCRVKSLKKTYQAIAEMRG 60
           +VS+GGWRS+N  FR GYLAQLQRMM +KL  TNIQ SL +DCRVKSLKK   +   +RG
Sbjct: 198 LVSAGGWRSNNGTFRLGYLAQLQRMMVKKLSDTNIQGSLPMDCRVKSLKKHLPSNFRIRG 257

Query: 61  SFCSGFDGMKNFNASLQNGSCL-------------------------IVGSRDQATGARA 117
             CSGF   + F   +                                V  +D+AT AR 
Sbjct: 258 PSCSGFGWNEKFQCIIAERDLFDNWVKSHPTAEGLLHKSFPYYDDLSYVFDKDRATEARL 317

[Close]

BLAST of PI0005848 vs. NCBI nr
Match: XP_031739703.1 (uncharacterized protein LOC116403241 [Cucumis sativus])

HSP 1 Score: 114.4 bits (285), Expect = 7.7e-22
Identity = 63/131 (48.09%), Postives = 80/131 (61.07%), Query Frame = 0


Query: 1   MVSSGGWRSDNEIFRPGYLAQLQRMMAEKLFGTNIQRSLTIDCRVKSLKKTYQAIAEMRG 60
           +V +GGW+SDN+ FRPGYLAQL RMMA KL G N+  +  IDCR+K+LK++YQAIAEM G
Sbjct: 67  LVFAGGWKSDNDTFRPGYLAQLLRMMAAKLSGCNVHATTVIDCRIKTLKRSYQAIAEMCG 126

Query: 61  SFCSGF--------------------------DGMKNFNASLQNGSCLIVGSRDQATGAR 106
             CSGF                          +G+ N + S  +    + G +D+ATGA 
Sbjct: 127 PSCSGFGWNDDAKCIVAEKELFDNWVRSHPATNGLLNKHFSYYDELAYLFG-KDRATGAH 186

The following BLAST results are available for this feature:

BLAST of PI0005848 vs.


Match Name	E-value	Identity	Description

BLAST of PI0005848 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U0H7	2.6e-31	56.03	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B4L3	2.6e-31	56.03	uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=...	[more]
A0A5A7TJS2	2.0e-23	48.94	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7V2H6	7.5e-23	56.36	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3D8J6	7.5e-23	48.23	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0005848 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441954.1	5.3e-31	56.03	PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret...	[more]
KAA0043564.1	4.1e-23	48.94	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0062283.1	1.5e-22	56.36	retrotransposon protein [Cucumis melo var. makuwa] >TYK26703.1 retrotransposon p...	[more]
TYK19779.1	1.5e-22	48.23	retrotransposon protein [Cucumis melo var. makuwa]	[more]
XP_031739703.1	7.7e-22	48.09	uncharacterized protein LOC116403241 [Cucumis sativus]	[more]

BLAST of PI0005848 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 1..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0005848.1	PI0005848.1	mRNA