PI0005835 (gene) Melon (PI 482460) v1

Overview


Name	PI0005835
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Ribonuclease H
Location	chr10: 3350405 .. 3350854 (+)
RNA-Seq Expression	PI0005835
Synteny	PI0005835

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAAAAGAGGGGCGAAAAGGATTGAGAAAGAGAGCCTAGAAGCATGCCTTCCAGAAAAACGAACGATGGAAGGATTCGATCCAAAAGCATATAGGTTGATGGCAAAGGCAGGTTATGACTTTACAACCGGTACCGAGTTCAAAAGCAAGATATTTGATGAAAGGCATGGGCTTTCTCCTACGCAAAGAAAGCTTCAAAAGCAAAGATATTTTATACCAAATTCAAGACCAGGAGTTGGGTATAAGTCTTCCGAGCCTGTTCGAATAACTGGTAAAGGAAAAGCAAAAGTTGCTGACACATGCCACATTACTGTTGAAGAATGCAACGATTCTAAAGAAGACAAGAAAAACGAAACTCAAAGAAGTTCTGTTTTTGATCGCATCACCTCCTCTACTACACGCTCTTCAGTTTTCATTGAATGTACCGACAAGGGAGGACAAAAATGA

mRNA sequence

ATGGATAAAAGAGGGGCGAAAAGGATTGAGAAAGAGAGCCTAGAAGCATGCCTTCCAGAAAAACGAACGATGGAAGGATTCGATCCAAAAGCATATAGGTTGATGGCAAAGGCAGGTTATGACTTTACAACCGGTACCGAGTTCAAAAGCAAGATATTTGATGAAAGGCATGGGCTTTCTCCTACGCAAAGAAAGCTTCAAAAGCAAAGATATTTTATACCAAATTCAAGACCAGGAGTTGGGTATAAGTCTTCCGAGCCTGTTCGAATAACTGGTAAAGGAAAAGCAAAAGTTGCTGACACATGCCACATTACTGTTGAAGAATGCAACGATTCTAAAGAAGACAAGAAAAACGAAACTCAAAGAAGTTCTGTTTTTGATCGCATCACCTCCTCTACTACACGCTCTTCAGTTTTCATTGAATGTACCGACAAGGGAGGACAAAAATGA

Coding sequence (CDS)

ATGGATAAAAGAGGGGCGAAAAGGATTGAGAAAGAGAGCCTAGAAGCATGCCTTCCAGAAAAACGAACGATGGAAGGATTCGATCCAAAAGCATATAGGTTGATGGCAAAGGCAGGTTATGACTTTACAACCGGTACCGAGTTCAAAAGCAAGATATTTGATGAAAGGCATGGGCTTTCTCCTACGCAAAGAAAGCTTCAAAAGCAAAGATATTTTATACCAAATTCAAGACCAGGAGTTGGGTATAAGTCTTCCGAGCCTGTTCGAATAACTGGTAAAGGAAAAGCAAAAGTTGCTGACACATGCCACATTACTGTTGAAGAATGCAACGATTCTAAAGAAGACAAGAAAAACGAAACTCAAAGAAGTTCTGTTTTTGATCGCATCACCTCCTCTACTACACGCTCTTCAGTTTTCATTGAATGTACCGACAAGGGAGGACAAAAATGA

Protein sequence

MDKRGAKRIEKESLEACLPEKRTMEGFDPKAYRLMAKAGYDFTTGTEFKSKIFDERHGLSPTQRKLQKQRYFIPNSRPGVGYKSSEPVRITGKGKAKVADTCHITVEECNDSKEDKKNETQRSSVFDRITSSTTRSSVFIECTDKGGQK

Homology

[Close]

BLAST of PI0005835 vs. ExPASy TrEMBL
Match: A0A5A7V4F2 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G004870 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.3e-47
Identity = 104/140 (74.29%), Postives = 118/140 (84.29%), Query Frame = 0


Query: 1   MDKRGAKRIEKESLEACLPEKRTMEGFDPKAYRLMAKAGYDFTTGTEFKS-KIFDERHGL 60
           ++K  AK+IEK+ LEA LPE+RT+EGFDPKAY+LMAKAGYDFTT TE KS KIFDER  L
Sbjct: 348 IEKGEAKKIEKKELEAYLPERRTVEGFDPKAYKLMAKAGYDFTTRTELKSVKIFDERPEL 407

Query: 61  SPTQRKLQKQRYFIPNSRPGVGYKSSEPVRITGKGKAKVADTCHITVEECNDSKEDKKNE 120
           SPTQ+KLQKQ Y IPNSR G+GY+SSEP+RITGKGKAKV +TCHITVEE  DSKE KK+ 
Sbjct: 408 SPTQKKLQKQGYSIPNSRAGIGYQSSEPIRITGKGKAKVTNTCHITVEESKDSKEGKKDR 467

Query: 121 TQRSSVFDRITSSTTRSSVF 140
           +QRSSVFDRI  S  R SVF
Sbjct: 468 SQRSSVFDRIAFSAIRPSVF 487

[Close]

BLAST of PI0005835 vs. ExPASy TrEMBL
Match: A0A5D3BTY1 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00630 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.3e-47
Identity = 104/140 (74.29%), Postives = 118/140 (84.29%), Query Frame = 0


Query: 1   MDKRGAKRIEKESLEACLPEKRTMEGFDPKAYRLMAKAGYDFTTGTEFKS-KIFDERHGL 60
           ++K  AK+IEK+ LEA LPE+RT+EGFDPKAY+LMAKAGYDFTT TE KS KIFDER  L
Sbjct: 348 IEKGEAKKIEKKELEAYLPERRTVEGFDPKAYKLMAKAGYDFTTRTELKSVKIFDERPEL 407

Query: 61  SPTQRKLQKQRYFIPNSRPGVGYKSSEPVRITGKGKAKVADTCHITVEECNDSKEDKKNE 120
           SPTQ+KLQKQ Y IPNSR G+GY+SSEP+RITGKGKAKV +TCHITVEE  DSKE KK+ 
Sbjct: 408 SPTQKKLQKQGYSIPNSRAGIGYQSSEPIRITGKGKAKVTNTCHITVEESKDSKEGKKDR 467

Query: 121 TQRSSVFDRITSSTTRSSVF 140
           +QRSSVFDRI  S  R SVF
Sbjct: 468 SQRSSVFDRIAFSAIRPSVF 487

[Close]

BLAST of PI0005835 vs. ExPASy TrEMBL
Match: A0A5A7TRQ6 (RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold284G00560 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 2.2e-47
Identity = 109/155 (70.32%), Postives = 124/155 (80.00%), Query Frame = 0


Query: 1   MDKRGAKRIEKESLEACLPEKRTMEGFDPKAYRLMAKAGYDFTTGTEFKS-KIFDERHGL 60
           ++K  AK+IEK+ LEA LPE+RT+EGFDPKAY+LMAKAGYDFTT TE KS KIFD+R  L
Sbjct: 503 IEKGEAKKIEKKDLEAYLPERRTVEGFDPKAYKLMAKAGYDFTTRTELKSVKIFDKRPEL 562

Query: 61  SPTQRKLQKQRYFIPNSRPGVGYKSSEPVRITGKGKAKVADTCHITVEECNDSKEDKKNE 120
           SPTQ+KLQKQ Y IPNSR  +GY+SSEPVRITGKGKAKVA+TCHITVEE  DSKE KK+ 
Sbjct: 563 SPTQKKLQKQGYSIPNSRARIGYQSSEPVRITGKGKAKVANTCHITVEESKDSKEGKKDR 622

Query: 121 TQRSSVFDRITSSTTRSSVFIECT-----DKGGQK 150
           +QRSSVFDRI  ST R SVF   +     DKG  K
Sbjct: 623 SQRSSVFDRIDFSTIRPSVFQRVSTSIAKDKGSLK 657

[Close]

BLAST of PI0005835 vs. ExPASy TrEMBL
Match: A0A5D3D5V8 (RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold418G00310 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 2.2e-47
Identity = 109/155 (70.32%), Postives = 124/155 (80.00%), Query Frame = 0


Query: 1   MDKRGAKRIEKESLEACLPEKRTMEGFDPKAYRLMAKAGYDFTTGTEFKS-KIFDERHGL 60
           ++K  AK+IEK+ LEA LPE+RT+EGFDPKAY+LMAKAGYDFTT TE KS KIFD+R  L
Sbjct: 556 IEKGEAKKIEKKDLEAYLPERRTVEGFDPKAYKLMAKAGYDFTTRTELKSVKIFDKRPEL 615

Query: 61  SPTQRKLQKQRYFIPNSRPGVGYKSSEPVRITGKGKAKVADTCHITVEECNDSKEDKKNE 120
           SPTQ+KLQKQ Y IPNSR  +GY+SSEPVRITGKGKAKVA+TCHITVEE  DSKE KK+ 
Sbjct: 616 SPTQKKLQKQGYSIPNSRARIGYQSSEPVRITGKGKAKVANTCHITVEESKDSKEGKKDR 675

Query: 121 TQRSSVFDRITSSTTRSSVFIECT-----DKGGQK 150
           +QRSSVFDRI  ST R SVF   +     DKG  K
Sbjct: 676 SQRSSVFDRIDFSTIRPSVFQRVSTSIAKDKGSLK 710

[Close]

BLAST of PI0005835 vs. ExPASy TrEMBL
Match: A0A5A7TZU9 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 6.3e-47
Identity = 104/140 (74.29%), Postives = 118/140 (84.29%), Query Frame = 0


Query: 1    MDKRGAKRIEKESLEACLPEKRTMEGFDPKAYRLMAKAGYDFTTGTEFKS-KIFDERHGL 60
            ++K  AK+IEK+ L+A LPE+RT+EGFDPKAY+LMAKAGYDFTT TE KS KIFDER  L
Sbjct: 994  IEKGEAKKIEKKDLQAYLPERRTVEGFDPKAYKLMAKAGYDFTTRTELKSVKIFDERPEL 1053

Query: 61   SPTQRKLQKQRYFIPNSRPGVGYKSSEPVRITGKGKAKVADTCHITVEECNDSKEDKKNE 120
            SPTQ+KLQKQ Y IPNSR G+GY+SSEPVRITGKGKAKVA+TCHITVEE  DS+E KK  
Sbjct: 1054 SPTQKKLQKQGYSIPNSRAGIGYQSSEPVRITGKGKAKVANTCHITVEESKDSEEGKKVR 1113

Query: 121  TQRSSVFDRITSSTTRSSVF 140
            +QRSSVFDRI  S  R SVF
Sbjct: 1114 SQRSSVFDRIAFSAIRPSVF 1133

[Close]

BLAST of PI0005835 vs. NCBI nr
Match: TYK02262.1 (uncharacterized protein E5676_scaffold18G00630 [Cucumis melo var. makuwa])

HSP 1 Score: 199.1 bits (505), Expect = 2.6e-47
Identity = 104/140 (74.29%), Postives = 118/140 (84.29%), Query Frame = 0


Query: 1   MDKRGAKRIEKESLEACLPEKRTMEGFDPKAYRLMAKAGYDFTTGTEFKS-KIFDERHGL 60
           ++K  AK+IEK+ LEA LPE+RT+EGFDPKAY+LMAKAGYDFTT TE KS KIFDER  L
Sbjct: 348 IEKGEAKKIEKKELEAYLPERRTVEGFDPKAYKLMAKAGYDFTTRTELKSVKIFDERPEL 407

Query: 61  SPTQRKLQKQRYFIPNSRPGVGYKSSEPVRITGKGKAKVADTCHITVEECNDSKEDKKNE 120
           SPTQ+KLQKQ Y IPNSR G+GY+SSEP+RITGKGKAKV +TCHITVEE  DSKE KK+ 
Sbjct: 408 SPTQKKLQKQGYSIPNSRAGIGYQSSEPIRITGKGKAKVTNTCHITVEESKDSKEGKKDR 467

Query: 121 TQRSSVFDRITSSTTRSSVF 140
           +QRSSVFDRI  S  R SVF
Sbjct: 468 SQRSSVFDRIAFSAIRPSVF 487

[Close]

BLAST of PI0005835 vs. NCBI nr
Match: KAA0060609.1 (uncharacterized protein E6C27_scaffold22G004870 [Cucumis melo var. makuwa])

HSP 1 Score: 199.1 bits (505), Expect = 2.6e-47
Identity = 104/140 (74.29%), Postives = 118/140 (84.29%), Query Frame = 0


Query: 1   MDKRGAKRIEKESLEACLPEKRTMEGFDPKAYRLMAKAGYDFTTGTEFKS-KIFDERHGL 60
           ++K  AK+IEK+ LEA LPE+RT+EGFDPKAY+LMAKAGYDFTT TE KS KIFDER  L
Sbjct: 348 IEKGEAKKIEKKELEAYLPERRTVEGFDPKAYKLMAKAGYDFTTRTELKSVKIFDERPEL 407

Query: 61  SPTQRKLQKQRYFIPNSRPGVGYKSSEPVRITGKGKAKVADTCHITVEECNDSKEDKKNE 120
           SPTQ+KLQKQ Y IPNSR G+GY+SSEP+RITGKGKAKV +TCHITVEE  DSKE KK+ 
Sbjct: 408 SPTQKKLQKQGYSIPNSRAGIGYQSSEPIRITGKGKAKVTNTCHITVEESKDSKEGKKDR 467

Query: 121 TQRSSVFDRITSSTTRSSVF 140
           +QRSSVFDRI  S  R SVF
Sbjct: 468 SQRSSVFDRIAFSAIRPSVF 487

[Close]

BLAST of PI0005835 vs. NCBI nr
Match: KAA0046253.1 (uncharacterized protein E6C27_scaffold284G00560 [Cucumis melo var. makuwa])

HSP 1 Score: 198.4 bits (503), Expect = 4.5e-47
Identity = 109/155 (70.32%), Postives = 124/155 (80.00%), Query Frame = 0


Query: 1   MDKRGAKRIEKESLEACLPEKRTMEGFDPKAYRLMAKAGYDFTTGTEFKS-KIFDERHGL 60
           ++K  AK+IEK+ LEA LPE+RT+EGFDPKAY+LMAKAGYDFTT TE KS KIFD+R  L
Sbjct: 503 IEKGEAKKIEKKDLEAYLPERRTVEGFDPKAYKLMAKAGYDFTTRTELKSVKIFDKRPEL 562

Query: 61  SPTQRKLQKQRYFIPNSRPGVGYKSSEPVRITGKGKAKVADTCHITVEECNDSKEDKKNE 120
           SPTQ+KLQKQ Y IPNSR  +GY+SSEPVRITGKGKAKVA+TCHITVEE  DSKE KK+ 
Sbjct: 563 SPTQKKLQKQGYSIPNSRARIGYQSSEPVRITGKGKAKVANTCHITVEESKDSKEGKKDR 622

Query: 121 TQRSSVFDRITSSTTRSSVFIECT-----DKGGQK 150
           +QRSSVFDRI  ST R SVF   +     DKG  K
Sbjct: 623 SQRSSVFDRIDFSTIRPSVFQRVSTSIAKDKGSLK 657

[Close]

BLAST of PI0005835 vs. NCBI nr
Match: TYK18947.1 (uncharacterized protein E5676_scaffold418G00310 [Cucumis melo var. makuwa])

HSP 1 Score: 198.4 bits (503), Expect = 4.5e-47
Identity = 109/155 (70.32%), Postives = 124/155 (80.00%), Query Frame = 0


Query: 1   MDKRGAKRIEKESLEACLPEKRTMEGFDPKAYRLMAKAGYDFTTGTEFKS-KIFDERHGL 60
           ++K  AK+IEK+ LEA LPE+RT+EGFDPKAY+LMAKAGYDFTT TE KS KIFD+R  L
Sbjct: 556 IEKGEAKKIEKKDLEAYLPERRTVEGFDPKAYKLMAKAGYDFTTRTELKSVKIFDKRPEL 615

Query: 61  SPTQRKLQKQRYFIPNSRPGVGYKSSEPVRITGKGKAKVADTCHITVEECNDSKEDKKNE 120
           SPTQ+KLQKQ Y IPNSR  +GY+SSEPVRITGKGKAKVA+TCHITVEE  DSKE KK+ 
Sbjct: 616 SPTQKKLQKQGYSIPNSRARIGYQSSEPVRITGKGKAKVANTCHITVEESKDSKEGKKDR 675

Query: 121 TQRSSVFDRITSSTTRSSVFIECT-----DKGGQK 150
           +QRSSVFDRI  ST R SVF   +     DKG  K
Sbjct: 676 SQRSSVFDRIDFSTIRPSVFQRVSTSIAKDKGSLK 710

[Close]

BLAST of PI0005835 vs. NCBI nr
Match: TYJ98225.1 (uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa])

HSP 1 Score: 196.8 bits (499), Expect = 1.3e-46
Identity = 104/140 (74.29%), Postives = 118/140 (84.29%), Query Frame = 0


Query: 1    MDKRGAKRIEKESLEACLPEKRTMEGFDPKAYRLMAKAGYDFTTGTEFKS-KIFDERHGL 60
            ++K  AK+IEK+ L+A LPE+RT+EGFDPKAY+LMAKAGYDFTT TE KS KIFDER  L
Sbjct: 972  IEKGEAKKIEKKDLQAYLPERRTVEGFDPKAYKLMAKAGYDFTTRTELKSVKIFDERPEL 1031

Query: 61   SPTQRKLQKQRYFIPNSRPGVGYKSSEPVRITGKGKAKVADTCHITVEECNDSKEDKKNE 120
            SPTQ+KLQKQ Y IPNSR G+GY+SSEPVRITGKGKAKVA+TCHITVEE  DS+E KK  
Sbjct: 1032 SPTQKKLQKQGYSIPNSRAGIGYQSSEPVRITGKGKAKVANTCHITVEESKDSEEGKKVR 1091

Query: 121  TQRSSVFDRITSSTTRSSVF 140
            +QRSSVFDRI  S  R SVF
Sbjct: 1092 SQRSSVFDRIAFSAIRPSVF 1111

The following BLAST results are available for this feature:

BLAST of PI0005835 vs.


Match Name	E-value	Identity	Description

BLAST of PI0005835 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V4F2	1.3e-47	74.29	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3BTY1	1.3e-47	74.29	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00630 ...	[more]
A0A5A7TRQ6	2.2e-47	70.32	RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3D5V8	2.2e-47	70.32	RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TZU9	6.3e-47	74.29	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940...	[more]

BLAST of PI0005835 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK02262.1	2.6e-47	74.29	uncharacterized protein E5676_scaffold18G00630 [Cucumis melo var. makuwa]	[more]
KAA0060609.1	2.6e-47	74.29	uncharacterized protein E6C27_scaffold22G004870 [Cucumis melo var. makuwa]	[more]
KAA0046253.1	4.5e-47	70.32	uncharacterized protein E6C27_scaffold284G00560 [Cucumis melo var. makuwa]	[more]
TYK18947.1	4.5e-47	70.32	uncharacterized protein E5676_scaffold418G00310 [Cucumis melo var. makuwa]	[more]
TYJ98225.1	1.3e-46	74.29	uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa]	[more]

BLAST of PI0005835 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0005835.1	PI0005835.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006508	proteolysis
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity