PI0005829 (gene) Melon (PI 482460) v1

Overview


Name	PI0005829
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 4
Location	chr11: 4286695 .. 4289008 (-)
RNA-Seq Expression	PI0005829
Synteny	PI0005829

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGACAGGCATTTCGTCGAGCAGCTGGAAGAATCAAACCGGCTTCGAGTATCGATTCCACTGCCGCGTCTTCGTTGAAAATGGAGAGCATCGTCGATCGGAAGCCTCCGCCGCTTGTGGCCGAGAAGGCTCGGGAGAGTGGCGCTCTTGATTCCGGTAATTGTAATTTGGTAATCGTTTGTGGTGTTTTGAGAATTGAGACCGAAGATTCATGCACGAGGATTATGTATTTTCTCTGTTGAGTTAAATGCAGTTTTGTAGAATTCGTATGAGTTGTTTCTCATCCGATTTCGATAACGAGCTTCAGTTTTTTGGATAACTTCCTTTCCTTCTGCTTTCTCCTACTAGCTTTTGCTGTTATTGATTATCTTCCTTGGTAATGTAGCAGCATTTCTCCGTTAGGATCCGAATTTAAAAGTTCATTTACTATTGATCTGATCATCATCACTTAAATAACTGTTCCCTTCCGTTTTTTTTCTTGTTTCACGGCTTCAATCTCTCTGAACTGAAATATCTCCTGGTTACTGTTCATTATCGTCTATCTTTTTCTTAGTGGATAACTTCCTTTCCTTCTGCTTTCTCCTACTAGCTTTTGCTGTTGTTGATTATCTTCCTTAGGTAATGTAGCAGCATTTCTCCATTAGGATCCGAATTTAAAAGTTCATTTACTATTGATCTGATCATCATCAGTTAAACAACTGTTCTCCTTCCGTTTTTTTTCTTGTTTCACGGCTTCAATCTCTCTGAACTGAAATATCTCCTGGTTACTGTTCATTATCGTCTATCTTTTTTCTTAGTGGATAACTTCTTTCCTTCTGCTTTCTCCTACTAGCTTTTGCTGTTGTTGATTATCTTCCTTAGGTAATGTAGCAGCATTTCTCCATTAGGATCCGAATTTAAAAGTTCATTTACTATTGATCTGATCATCATCAGTTAAACAACTGTTCTCCTTCCGTTTTTTTTCTTGTTTCACGGCTTCAATCTCTCTGAACTGAAATATCTCCTGGTTACTGTTCATTATCGTCTATCTTTTTTCTTAGTGCTTGATTTTGTAGAAGTAGAACTATGGACGAGGTTACTGTTGACGTCAGCATTTCCTTCTGGTTACGGTTTTATGTGATCTCTTTTATCCTAAACATTGAGTTCACTTGCTTCTCAGATTGTGATTTTTTCTTCTTATTCTTCTTCTTATATTATTTCCATTAGTTGCATTTATGGAGACTCAAGGTGAGAAGTTTTTTGTTCTCTGCTTCCATTGCGTATGTTTTTCGTTAGCTTCCGTTGATTTAGGCTTCCATTGTCTAAACATGTAAAAAAAACAAGAACAGGCGAAGAAAATGCTCTGAATGCTCTTTTTGTTTGACTCTCTTTCTCCGGTTGAACCAAATGCAGCTCGATAGTATTCCTTTGAGTTCTAAATAATCGGATTTTGATATCGAGCTTGATTTTTTTGAGGAGGTCAATCTGGAAGGGCAATAAACATCAAATTGACGCGGAAATAAAGTCAGGAACAAATGAAGAATAACTTTCTATAATGCATGTGAATTGTAAAACGTTGTCGAAAGTCACTTCAAAATCAGTTTGATGTGTTTTCTGCTGACAGGAATTTATTCATAGGATGCAATATAATCGATTGCTAACCACTTTCTATTGTTCCTTCAGGTGATGTCCCGGCAAGTGATTCGGGAAACATGCTTGAAGAACGAGATCCCCAATTTGATGCCATGCTTAACCAAATGGTGGGTCGAATAAAATCAAAGCCCGGAGGAAAACTTGAGATGGGGGAGGTAAGTTTCCATAAGAAACTGCCAAATTACTCTTATAATTCCAGGAATTGAATATAAGTTAAAGACTGCTTTCAACTGTTGAGTATGATTCAATGCTCGCTTCCTTACTCCATTAATAATCCTTAATGTAGGAATCTGGTATGATCTACCGATAAGTTCATAAAGATTAATATAAATTGTTAGTGAATAACTGATCACTTGGTAACTAGTCAATCTTTATCAACTATATCAAACACTATTTAAATTTGTGATTTCGTATGCGTATAAGTTAATAGTCTTTGTCTTTAATTGTTAGGAGAAAAAAGTCCAAGCTACACCACAATGGAATTTTTTTTTTATAATAACTCCTTACTTCAAAATCGTGGTGGTAAATCACATCAGAAGTATGGAGATTTATTTATCTCCATATATATATTGGTGAGGAGGCAAGTTTTATTCTTTTATTTGGAAGAAATTTTTTCTGATCCTTCTTGGTCTAAGCAATTTAGGCAAGGAGATTCCTCTTCTCTTTGGCTTTCTGGATAAA

mRNA sequence

ATGGGACAGGCATTTCGTCGAGCAGCTGGAAGAATCAAACCGGCTTCGAGTATCGATTCCACTGCCGCGTCTTCGTTGAAAATGGAGAGCATCGTCGATCGGAAGCCTCCGCCGCTTGTGGCCGAGAAGGCTCGGGAGAGTGGCGCTCTTGATTCCGGTGATGTCCCGGCAAGTGATTCGGGAAACATGCTTGAAGAACGAGATCCCCAATTTGATGCCATGCTTAACCAAATGGTGGGTCGAATAAAATCAAAGCCCGGAGGAAAACTTGAGATGGGGGAGGAGAAAAAAGTCCAAGCTACACCACAATGGAATTTTTTTTTTATAATAACTCCTTACTTCAAAATCGTGGTGGTAAATCACATCAGAAGTATGGAGATTTATTTATCTCCATATATATATTGGTGAGGAGGCAAGTTTTATTCTTTTATTTGGAAGAAATTTTTTCTGATCCTTCTTGGTCTAAGCAATTTAGGCAAGGAGATTCCTCTTCTCTTTGGCTTTCTGGATAAA

Coding sequence (CDS)

ATGGGACAGGCATTTCGTCGAGCAGCTGGAAGAATCAAACCGGCTTCGAGTATCGATTCCACTGCCGCGTCTTCGTTGAAAATGGAGAGCATCGTCGATCGGAAGCCTCCGCCGCTTGTGGCCGAGAAGGCTCGGGAGAGTGGCGCTCTTGATTCCGGTGATGTCCCGGCAAGTGATTCGGGAAACATGCTTGAAGAACGAGATCCCCAATTTGATGCCATGCTTAACCAAATGGTGGGTCGAATAAAATCAAAGCCCGGAGGAAAACTTGAGATGGGGGAGGAGAAAAAAGTCCAAGCTACACCACAATGGAATTTTTTTTTTATAATAACTCCTTACTTCAAAATCGTGGTGGTAAATCACATCAGAAGTATGGAGATTTATTTATCTCCATATATATATTGGTGA

Protein sequence

MGQAFRRAAGRIKPASSIDSTAASSLKMESIVDRKPPPLVAEKARESGALDSGDVPASDSGNMLEERDPQFDAMLNQMVGRIKSKPGGKLEMGEEKKVQATPQWNFFFIITPYFKIVVVNHIRSMEIYLSPYIYW

Homology

[Close]

BLAST of PI0005829 vs. ExPASy TrEMBL
Match: A0A0A0KCC5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G196710 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.4e-40
Identity = 92/99 (92.93%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 1   MGQAFRRAAGRIKPASSIDSTAASSLKMESIVDRKPPPLVAEKARESGALDSGDVPASDS 60
           MGQAFRRAAGRIKPASSIDST ASSLKMESIVDRKPPP VAEKARESGALDSGDVPASDS
Sbjct: 1   MGQAFRRAAGRIKPASSIDSTTASSLKMESIVDRKPPPRVAEKARESGALDSGDVPASDS 60

Query: 61  GNMLEERDPQFDAMLNQMVGRIKSKPGGKLEMGEEKKVQ 100
           GNMLEERDPQFDAML+QMVGRIKSKPGGKLEMGE   V+
Sbjct: 61  GNMLEERDPQFDAMLSQMVGRIKSKPGGKLEMGEASVVE 99

[Close]

BLAST of PI0005829 vs. ExPASy TrEMBL
Match: A0A1S3C7E9 (uncharacterized protein LOC103497865 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497865 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.7e-38
Identity = 88/99 (88.89%), Postives = 92/99 (92.93%), Query Frame = 0


Query: 1   MGQAFRRAAGRIKPASSIDSTAASSLKMESIVDRKPPPLVAEKARESGALDSGDVPASDS 60
           MGQAFRRAAGRIKPASS+DST ASSLKMESIVDRKPPP VAEKARESG+LDSGDV ASDS
Sbjct: 1   MGQAFRRAAGRIKPASSVDSTTASSLKMESIVDRKPPPRVAEKARESGSLDSGDVTASDS 60

Query: 61  GNMLEERDPQFDAMLNQMVGRIKSKPGGKLEMGEEKKVQ 100
           GN LEERDPQFDAML+QMVGRIKSKPGGKLEMGE   V+
Sbjct: 61  GNRLEERDPQFDAMLSQMVGRIKSKPGGKLEMGEASVVE 99

[Close]

BLAST of PI0005829 vs. ExPASy TrEMBL
Match: A0A1S3C957 (uncharacterized protein LOC103497865 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497865 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.7e-38
Identity = 88/99 (88.89%), Postives = 92/99 (92.93%), Query Frame = 0


Query: 1   MGQAFRRAAGRIKPASSIDSTAASSLKMESIVDRKPPPLVAEKARESGALDSGDVPASDS 60
           MGQAFRRAAGRIKPASS+DST ASSLKMESIVDRKPPP VAEKARESG+LDSGDV ASDS
Sbjct: 1   MGQAFRRAAGRIKPASSVDSTTASSLKMESIVDRKPPPRVAEKARESGSLDSGDVTASDS 60

Query: 61  GNMLEERDPQFDAMLNQMVGRIKSKPGGKLEMGEEKKVQ 100
           GN LEERDPQFDAML+QMVGRIKSKPGGKLEMGE   V+
Sbjct: 61  GNRLEERDPQFDAMLSQMVGRIKSKPGGKLEMGEASVVE 99

[Close]

BLAST of PI0005829 vs. ExPASy TrEMBL
Match: A0A6J1L288 (uncharacterized protein LOC111499180 OS=Cucurbita maxima OX=3661 GN=LOC111499180 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 2.5e-34
Identity = 82/99 (82.83%), Postives = 90/99 (90.91%), Query Frame = 0


Query: 1   MGQAFRRAAGRIKPASSIDSTAASSLKMESIVDRKPPPLVAEKARESGALDSGDVPASDS 60
           MGQAFRRAAGRIKPASSIDS +ASSLKMES+VDRKPPP  AEKARESG+LDSGDV  S+S
Sbjct: 1   MGQAFRRAAGRIKPASSIDS-SASSLKMESVVDRKPPPRAAEKARESGSLDSGDVLGSNS 60

Query: 61  GNMLEERDPQFDAMLNQMVGRIKSKPGGKLEMGEEKKVQ 100
           GN+LEERDPQFDAML+QM GRI+SKPGGKLEMGE   V+
Sbjct: 61  GNVLEERDPQFDAMLSQMAGRIRSKPGGKLEMGEASVVE 98

[Close]

BLAST of PI0005829 vs. ExPASy TrEMBL
Match: A0A6J1H4J6 (uncharacterized protein LOC111459975 OS=Cucurbita moschata OX=3662 GN=LOC111459975 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 9.5e-34
Identity = 82/99 (82.83%), Postives = 89/99 (89.90%), Query Frame = 0


Query: 1   MGQAFRRAAGRIKPASSIDSTAASSLKMESIVDRKPPPLVAEKARESGALDSGDVPASDS 60
           MGQAFRRAAGRIKPASSIDS +ASSLKMES+VDRKPPP  AEKARESGALDSGDV  S+S
Sbjct: 1   MGQAFRRAAGRIKPASSIDS-SASSLKMESVVDRKPPPRAAEKARESGALDSGDVLGSNS 60

Query: 61  GNMLEERDPQFDAMLNQMVGRIKSKPGGKLEMGEEKKVQ 100
            N+LEERDPQFDAML+QM GRI+SKPGGKLEMGE   V+
Sbjct: 61  ENVLEERDPQFDAMLSQMAGRIRSKPGGKLEMGEASVVE 98

[Close]

BLAST of PI0005829 vs. NCBI nr
Match: XP_011657169.1 (uncharacterized protein LOC101223121 [Cucumis sativus] >XP_031743505.1 uncharacterized protein LOC101223121 [Cucumis sativus] >KGN47188.1 hypothetical protein Csa_020957 [Cucumis sativus])

HSP 1 Score: 175.6 bits (444), Expect = 2.8e-40
Identity = 92/99 (92.93%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 1   MGQAFRRAAGRIKPASSIDSTAASSLKMESIVDRKPPPLVAEKARESGALDSGDVPASDS 60
           MGQAFRRAAGRIKPASSIDST ASSLKMESIVDRKPPP VAEKARESGALDSGDVPASDS
Sbjct: 1   MGQAFRRAAGRIKPASSIDSTTASSLKMESIVDRKPPPRVAEKARESGALDSGDVPASDS 60

Query: 61  GNMLEERDPQFDAMLNQMVGRIKSKPGGKLEMGEEKKVQ 100
           GNMLEERDPQFDAML+QMVGRIKSKPGGKLEMGE   V+
Sbjct: 61  GNMLEERDPQFDAMLSQMVGRIKSKPGGKLEMGEASVVE 99

[Close]

BLAST of PI0005829 vs. NCBI nr
Match: XP_008458465.1 (PREDICTED: uncharacterized protein LOC103497865 isoform X1 [Cucumis melo])

HSP 1 Score: 168.7 bits (426), Expect = 3.4e-38
Identity = 88/99 (88.89%), Postives = 92/99 (92.93%), Query Frame = 0


Query: 1   MGQAFRRAAGRIKPASSIDSTAASSLKMESIVDRKPPPLVAEKARESGALDSGDVPASDS 60
           MGQAFRRAAGRIKPASS+DST ASSLKMESIVDRKPPP VAEKARESG+LDSGDV ASDS
Sbjct: 1   MGQAFRRAAGRIKPASSVDSTTASSLKMESIVDRKPPPRVAEKARESGSLDSGDVTASDS 60

Query: 61  GNMLEERDPQFDAMLNQMVGRIKSKPGGKLEMGEEKKVQ 100
           GN LEERDPQFDAML+QMVGRIKSKPGGKLEMGE   V+
Sbjct: 61  GNRLEERDPQFDAMLSQMVGRIKSKPGGKLEMGEASVVE 99

[Close]

BLAST of PI0005829 vs. NCBI nr
Match: XP_008458466.1 (PREDICTED: uncharacterized protein LOC103497865 isoform X2 [Cucumis melo])

HSP 1 Score: 168.7 bits (426), Expect = 3.4e-38
Identity = 88/99 (88.89%), Postives = 92/99 (92.93%), Query Frame = 0


Query: 1   MGQAFRRAAGRIKPASSIDSTAASSLKMESIVDRKPPPLVAEKARESGALDSGDVPASDS 60
           MGQAFRRAAGRIKPASS+DST ASSLKMESIVDRKPPP VAEKARESG+LDSGDV ASDS
Sbjct: 1   MGQAFRRAAGRIKPASSVDSTTASSLKMESIVDRKPPPRVAEKARESGSLDSGDVTASDS 60

Query: 61  GNMLEERDPQFDAMLNQMVGRIKSKPGGKLEMGEEKKVQ 100
           GN LEERDPQFDAML+QMVGRIKSKPGGKLEMGE   V+
Sbjct: 61  GNRLEERDPQFDAMLSQMVGRIKSKPGGKLEMGEASVVE 99

[Close]

BLAST of PI0005829 vs. NCBI nr
Match: XP_038875975.1 (uncharacterized protein LOC120068322 [Benincasa hispida])

HSP 1 Score: 157.5 bits (397), Expect = 7.9e-35
Identity = 84/99 (84.85%), Postives = 90/99 (90.91%), Query Frame = 0


Query: 1   MGQAFRRAAGRIKPASSIDSTAASSLKMESIVDRKPPPLVAEKARESGALDSGDVPASDS 60
           MGQAFRRAAGRIKPASSIDST ASSLKMES+ DRKPPP VAEKARESGALD GDV  S+S
Sbjct: 1   MGQAFRRAAGRIKPASSIDST-ASSLKMESVADRKPPPRVAEKARESGALDFGDVSESNS 60

Query: 61  GNMLEERDPQFDAMLNQMVGRIKSKPGGKLEMGEEKKVQ 100
           GN+LEERDPQFDAML+QMVGRI+SKPGGKLEMGE   V+
Sbjct: 61  GNVLEERDPQFDAMLSQMVGRIRSKPGGKLEMGEASVVE 98

[Close]

BLAST of PI0005829 vs. NCBI nr
Match: XP_023006464.1 (uncharacterized protein LOC111499180 [Cucurbita maxima])

HSP 1 Score: 154.8 bits (390), Expect = 5.1e-34
Identity = 82/99 (82.83%), Postives = 90/99 (90.91%), Query Frame = 0


Query: 1   MGQAFRRAAGRIKPASSIDSTAASSLKMESIVDRKPPPLVAEKARESGALDSGDVPASDS 60
           MGQAFRRAAGRIKPASSIDS +ASSLKMES+VDRKPPP  AEKARESG+LDSGDV  S+S
Sbjct: 1   MGQAFRRAAGRIKPASSIDS-SASSLKMESVVDRKPPPRAAEKARESGSLDSGDVLGSNS 60

Query: 61  GNMLEERDPQFDAMLNQMVGRIKSKPGGKLEMGEEKKVQ 100
           GN+LEERDPQFDAML+QM GRI+SKPGGKLEMGE   V+
Sbjct: 61  GNVLEERDPQFDAMLSQMAGRIRSKPGGKLEMGEASVVE 98

[Close]

BLAST of PI0005829 vs. TAIR 10
Match: AT3G21400.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 29 Blast hits to 29 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 73.2 bits (178), Expect = 1.8e-13
Identity = 48/105 (45.71%), Postives = 58/105 (55.24%), Query Frame = 0


Query: 1   MGQAFRRAAGRIKPASSIDSTAAS----SLKMESIVDRKPPPLVAEKARESGALDSGDVP 60
           MGQ  RRA G+IK       +  S    SL  E +   K  P     A   G  D G   
Sbjct: 1   MGQQLRRAVGKIKEVERSSPSRVSIDRRSLPTEELSAVKSSP---STAAVDGVSDKGRRT 60

Query: 61  ASDSGNMLEERDPQFDAMLNQMVGRIKSKPGGKLEMGEEKKVQAT 102
           + D  N+LEERDP++D MLNQMVGRIK+KPGGK EMGE   V+ +
Sbjct: 61  SED--NVLEERDPKYDTMLNQMVGRIKAKPGGKAEMGEASVVETS 100

The following BLAST results are available for this feature:

BLAST of PI0005829 vs.


Match Name	E-value	Identity	Description

BLAST of PI0005829 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCC5	1.4e-40	92.93	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G196710 PE=4 SV=1	[more]
A0A1S3C7E9	1.7e-38	88.89	uncharacterized protein LOC103497865 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3C957	1.7e-38	88.89	uncharacterized protein LOC103497865 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1L288	2.5e-34	82.83	uncharacterized protein LOC111499180 OS=Cucurbita maxima OX=3661 GN=LOC111499180...	[more]
A0A6J1H4J6	9.5e-34	82.83	uncharacterized protein LOC111459975 OS=Cucurbita moschata OX=3662 GN=LOC1114599...	[more]

BLAST of PI0005829 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011657169.1	2.8e-40	92.93	uncharacterized protein LOC101223121 [Cucumis sativus] >XP_031743505.1 uncharact...	[more]
XP_008458465.1	3.4e-38	88.89	PREDICTED: uncharacterized protein LOC103497865 isoform X1 [Cucumis melo]	[more]
XP_008458466.1	3.4e-38	88.89	PREDICTED: uncharacterized protein LOC103497865 isoform X2 [Cucumis melo]	[more]
XP_038875975.1	7.9e-35	84.85	uncharacterized protein LOC120068322 [Benincasa hispida]	[more]
XP_023006464.1	5.1e-34	82.83	uncharacterized protein LOC111499180 [Cucurbita maxima]	[more]

BLAST of PI0005829 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G21400.1	1.8e-13	45.71	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..67
None	No IPR available	PANTHER	PTHR36759	DYNEIN BETA CHAIN, CILIARY PROTEIN	coord: 1..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0005829.1	PI0005829.1	mRNA