PI0005739 (gene) Melon (PI 482460) v1

Overview
NamePI0005739
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionIntegrase, catalytic core
Locationchr07: 17648448 .. 17648717 (+)
RNA-Seq ExpressionPI0005739
SyntenyPI0005739
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAGTGTCTTGTTCCAATACCAATCAAGTGGAACTAAATAATGTATTTTATGTGCCTGAAATGAAGAAGACTTTGGTGTCAGTATCTCAATTGACTTCAGCAGCCAACTTCGTCGTGTTTGGACCTAATGATGTCAAGGTGTATCATAATCTCAAAGTAAGTGGTACATCGTTGATGAAAGGATGAAGGATGGACTCTATTTACGTTATGTTGGTAGGGACCACCTACATGAACAAAACAGGAAAGACTGAAACAACAGATTTGTGA

mRNA sequence

ATGATAGTGTCTTGTTCCAATACCAATCAAGTGGAACTAAATAATGTATTTTATGTGCCTGAAATGAAGAAGACTTTGGTGTCAGTATCTCAATTGACTTCAGCAGCCAACTTCGTCGTGTTTGGACCTAATGATGTCAAGGTGATGGACTCTATTTACGTTATGTTGGTAGGGACCACCTACATGAACAAAACAGGAAAGACTGAAACAACAGATTTGTGA

Coding sequence (CDS)

ATGATAGTGTCTTGTTCCAATACCAATCAAGTGGAACTAAATAATGTATTTTATGTGCCTGAAATGAAGAAGACTTTGGTGTCAGTATCTCAATTGACTTCAGCAGCCAACTTCGTCGTGTTTGGACCTAATGATGTCAAGGTGATGGACTCTATTTACGTTATGTTGGTAGGGACCACCTACATGAACAAAACAGGAAAGACTGAAACAACAGATTTGTGA

Protein sequence

MIVSCSNTNQVELNNVFYVPEMKKTLVSVSQLTSAANFVVFGPNDVKVMDSIYVMLVGTTYMNKTGKTETTDL
Homology
[Close]
BLAST of PI0005739 vs. ExPASy TrEMBL
Match: A0A5A7TYD2 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G001190 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.2e-16
Identity = 55/89 (61.80%), Postives = 60/89 (67.42%), Query Frame = 0 

Query: 1   MIVSCSNTNQVELNNVFYVPEMKKTLVSVSQLTSAANFVVFGPNDVKV------------ 60
           MIV  SN+NQVEL+NVFYV  MKK LVSVSQLTSA NFVVFGP+DVKV            
Sbjct: 193 MIVPRSNSNQVELDNVFYVSGMKKNLVSVSQLTSAGNFVVFGPDDVKVYHNLKVSGTPLM 252

Query: 61  ----MDSIYVMLVGTTYMNKTGKTETTDL 74
               MDSIYVM   T Y+NKT K +T DL
Sbjct: 253 EGRRMDSIYVMSAETAYVNKTRKNDTADL 281

[Close]
BLAST of PI0005739 vs. ExPASy TrEMBL
Match: A0A5A7T2J1 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25G00560 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.8e-16
Identity = 54/89 (60.67%), Postives = 58/89 (65.17%), Query Frame = 0 

Query: 1   MIVSCSNTNQVELNNVFYVPEMKKTLVSVSQLTSAANFVVFGPNDVKV------------ 60
           MIV  SN NQVEL+NVFYVP MKK LV++SQLTS  NFVVFGPNDVKV            
Sbjct: 178 MIVPRSNFNQVELDNVFYVPGMKKNLVTISQLTSVGNFVVFGPNDVKVYHNFKVSGTPLI 237

Query: 61  ----MDSIYVMLVGTTYMNKTGKTETTDL 74
               MD IYVM   T Y+NKT K ET DL
Sbjct: 238 EGRRMDFIYVMSAETAYVNKTRKNETVDL 266

[Close]
BLAST of PI0005739 vs. ExPASy TrEMBL
Match: A0A5A7ST06 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G00370 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.8e-16
Identity = 55/89 (61.80%), Postives = 61/89 (68.54%), Query Frame = 0 

Query: 1   MIVSCSNTNQVELNNVFYVPEMKKTLVSVSQLTSAANFVVFGPNDVKV------------ 60
           MIV  SN+NQVEL+NVFYV EMKK LVSVSQLTSA+NF+VFG N+VKV            
Sbjct: 78  MIVPRSNSNQVELDNVFYVLEMKKNLVSVSQLTSASNFIVFGSNNVKVYHNLKVSGTPLM 137

Query: 61  ----MDSIYVMLVGTTYMNKTGKTETTDL 74
               MDSIYVM   TTY+NK  K ET DL
Sbjct: 138 EGRRMDSIYVMSAETTYINKMQKNETADL 166

[Close]
BLAST of PI0005739 vs. ExPASy TrEMBL
Match: A0A5D3DWA1 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold749G00120 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.1e-15
Identity = 53/89 (59.55%), Postives = 60/89 (67.42%), Query Frame = 0 

Query: 1   MIVSCSNTNQVELNNVFYVPEMKKTLVSVSQLTSAANFVVFGPNDVKV------------ 60
           MIV CSN+NQVEL++VFYVP MKK L+SVSQLTSA NFVVFGP+DVKV            
Sbjct: 39  MIVPCSNSNQVELDHVFYVPGMKKNLMSVSQLTSADNFVVFGPDDVKVYHNLKVSGTPLM 98

Query: 61  ----MDSIYVMLVGTTYMNKTGKTETTDL 74
               + SIYVM V   Y+ KT K ET DL
Sbjct: 99  EGRRIKSIYVMSVEIAYVKKTQKNETADL 127

[Close]
BLAST of PI0005739 vs. ExPASy TrEMBL
Match: A0A5A7SML7 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002220 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.1e-15
Identity = 52/89 (58.43%), Postives = 59/89 (66.29%), Query Frame = 0 

Query: 1   MIVSCSNTNQVELNNVFYVPEMKKTLVSVSQLTSAANFVVFGPNDVKV------------ 60
           MIV CSN+NQVEL++VFYVP MKK L+SVSQLTSA NFVVFGP+DVK             
Sbjct: 39  MIVPCSNSNQVELDHVFYVPGMKKNLMSVSQLTSADNFVVFGPDDVKAYHNLKVSGAPLM 98

Query: 61  ----MDSIYVMLVGTTYMNKTGKTETTDL 74
               + SIYVM V   Y+ KT K ET DL
Sbjct: 99  EGRRIKSIYVMSVEIAYVKKTQKNETADL 127

[Close]
BLAST of PI0005739 vs. NCBI nr
Match: KAA0046986.1 (Integrase, catalytic core [Cucumis melo var. makuwa] >TYK04797.1 Integrase, catalytic core [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 4.5e-16
Identity = 55/89 (61.80%), Postives = 60/89 (67.42%), Query Frame = 0 

Query: 1   MIVSCSNTNQVELNNVFYVPEMKKTLVSVSQLTSAANFVVFGPNDVKV------------ 60
           MIV  SN+NQVEL+NVFYV  MKK LVSVSQLTSA NFVVFGP+DVKV            
Sbjct: 193 MIVPRSNSNQVELDNVFYVSGMKKNLVSVSQLTSAGNFVVFGPDDVKVYHNLKVSGTPLM 252

Query: 61  ----MDSIYVMLVGTTYMNKTGKTETTDL 74
               MDSIYVM   T Y+NKT K +T DL
Sbjct: 253 EGRRMDSIYVMSAETAYVNKTRKNDTADL 281

[Close]
BLAST of PI0005739 vs. NCBI nr
Match: KAA0037684.1 (Integrase, catalytic core [Cucumis melo var. makuwa] >TYK10689.1 Integrase, catalytic core [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 5.8e-16
Identity = 54/89 (60.67%), Postives = 58/89 (65.17%), Query Frame = 0 

Query: 1   MIVSCSNTNQVELNNVFYVPEMKKTLVSVSQLTSAANFVVFGPNDVKV------------ 60
           MIV  SN NQVEL+NVFYVP MKK LV++SQLTS  NFVVFGPNDVKV            
Sbjct: 178 MIVPRSNFNQVELDNVFYVPGMKKNLVTISQLTSVGNFVVFGPNDVKVYHNFKVSGTPLI 237

Query: 61  ----MDSIYVMLVGTTYMNKTGKTETTDL 74
               MD IYVM   T Y+NKT K ET DL
Sbjct: 238 EGRRMDFIYVMSAETAYVNKTRKNETVDL 266

[Close]
BLAST of PI0005739 vs. NCBI nr
Match: KAA0033603.1 (Integrase, catalytic core [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 5.8e-16
Identity = 55/89 (61.80%), Postives = 61/89 (68.54%), Query Frame = 0 

Query: 1   MIVSCSNTNQVELNNVFYVPEMKKTLVSVSQLTSAANFVVFGPNDVKV------------ 60
           MIV  SN+NQVEL+NVFYV EMKK LVSVSQLTSA+NF+VFG N+VKV            
Sbjct: 78  MIVPRSNSNQVELDNVFYVLEMKKNLVSVSQLTSASNFIVFGSNNVKVYHNLKVSGTPLM 137

Query: 61  ----MDSIYVMLVGTTYMNKTGKTETTDL 74
               MDSIYVM   TTY+NK  K ET DL
Sbjct: 138 EGRRMDSIYVMSAETTYINKMQKNETADL 166

[Close]
BLAST of PI0005739 vs. NCBI nr
Match: TYK27792.1 (Integrase, catalytic core [Cucumis melo var. makuwa])

HSP 1 Score: 92.0 bits (227), Expect = 2.2e-15
Identity = 53/89 (59.55%), Postives = 60/89 (67.42%), Query Frame = 0 

Query: 1   MIVSCSNTNQVELNNVFYVPEMKKTLVSVSQLTSAANFVVFGPNDVKV------------ 60
           MIV CSN+NQVEL++VFYVP MKK L+SVSQLTSA NFVVFGP+DVKV            
Sbjct: 39  MIVPCSNSNQVELDHVFYVPGMKKNLMSVSQLTSADNFVVFGPDDVKVYHNLKVSGTPLM 98

Query: 61  ----MDSIYVMLVGTTYMNKTGKTETTDL 74
               + SIYVM V   Y+ KT K ET DL
Sbjct: 99  EGRRIKSIYVMSVEIAYVKKTQKNETADL 127

[Close]
BLAST of PI0005739 vs. NCBI nr
Match: KAA0025923.1 (Integrase, catalytic core [Cucumis melo var. makuwa])

HSP 1 Score: 90.5 bits (223), Expect = 6.4e-15
Identity = 52/89 (58.43%), Postives = 59/89 (66.29%), Query Frame = 0 

Query: 1   MIVSCSNTNQVELNNVFYVPEMKKTLVSVSQLTSAANFVVFGPNDVKV------------ 60
           MIV CSN+NQVEL++VFYVP MKK L+SVSQLTSA NFVVFGP+DVK             
Sbjct: 39  MIVPCSNSNQVELDHVFYVPGMKKNLMSVSQLTSADNFVVFGPDDVKAYHNLKVSGAPLM 98

Query: 61  ----MDSIYVMLVGTTYMNKTGKTETTDL 74
               + SIYVM V   Y+ KT K ET DL
Sbjct: 99  EGRRIKSIYVMSVEIAYVKKTQKNETADL 127

The following BLAST results are available for this feature:
BLAST of PI0005739 vs.
Match NameE-valueIdentityDescription
BLAST of PI0005739 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TYD22.2e-1661.80Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A5A7T2J12.8e-1660.67Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A5A7ST062.8e-1661.80Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo... [more]
A0A5D3DWA11.1e-1559.55Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A5A7SML73.1e-1558.43Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo... [more]
BLAST of PI0005739 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0046986.14.5e-1661.80Integrase, catalytic core [Cucumis melo var. makuwa] >TYK04797.1 Integrase, cata... [more]
KAA0037684.15.8e-1660.67Integrase, catalytic core [Cucumis melo var. makuwa] >TYK10689.1 Integrase, cata... [more]
KAA0033603.15.8e-1661.80Integrase, catalytic core [Cucumis melo var. makuwa][more]
TYK27792.12.2e-1559.55Integrase, catalytic core [Cucumis melo var. makuwa][more]
KAA0025923.16.4e-1558.43Integrase, catalytic core [Cucumis melo var. makuwa][more]
BLAST of PI0005739 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0005739.1PI0005739.1mRNA