PI0005712 (gene) Melon (PI 482460) v1

Overview


Name	PI0005712
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr06: 19381991 .. 19382608 (-)
RNA-Seq Expression	PI0005712
Synteny	PI0005712

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAATTACAATTCATTTCAACAAGTAGAATCTCAATGCACATAAATCCAAACATGAAATCTTCAATCCAAAGGTACAATAAAGGCTGAAGCTGCATCACTGTAAACAAATCAAACACTAAGAAACAGTTTTAAACTAAACAAACTACAAATGCTCAGACCAAATGTTGAAACTCCATAATTGAGCTTCACATAACTTGACCCACTTTTCCCCATGAACTCGCTGGAGCCCGGCGCCAATGCCGGTTCTGTAGAAATGGGAGAAGAATGGTCATCAACAGAAGGAAAAAACGAAGACATATTGTGGGAAGTTCTGTGTGGTGAAACATGCGGAGAAGCCGATATGGAAGAGGCGGCCACTGGAGATGAGACAAAAAATGTGGGTAGAGACAAGGCCACACAGAAGCAAACCGCGGCGGTAGCCATTGATGCAGAGAGATCTCAGTAAGAAATTCAATAGCGACCAATGAAGAAGAAATAACTGGTATACAAAGATTTATGGGAATTATGGCAAAAGAAGCGGATAAACCCAGTAGAAGAGAGAGTTTTGGTAAGTGGGTAAGCATTGGAATAGTGATGGAGCATCACGGGGATGACAGTTTTATCCACAAAAAATTAC

mRNA sequence

GAAAATTACAATTCATTTCAACAAGTAGAATCTCAATGCACATAAATCCAAACATGAAATCTTCAATCCAAAGGTACAATAAAGGCTGAAGCTGCATCACTGTAAACAAATCAAACACTAAGAAACAGTTTTAAACTAAACAAACTACAAATGCTCAGACCAAATGTTGAAACTCCATAATTGAGCTTCACATAACTTGACCCACTTTTCCCCATGAACTCGCTGGAGCCCGGCGCCAATGCCGGTTCTGTAGAAATGGGAGAAGAATGGTCATCAACAGAAGGAAAAAACGAAGACATATTGTGGGAAGTTCTGTGTGGTGAAACATGCGGAGAAGCCGATATGGAAGAGGCGGCCACTGGAGATGAGACAAAAAATGTGGGTAGAGACAAGGCCACACAGAAGCAAACCGCGGCGGTAGCCATTGATGCAGAGAGATCTCAGTAAGAAATTCAATAGCGACCAATGAAGAAGAAATAACTGGTATACAAAGATTTATGGGAATTATGGCAAAAGAAGCGGATAAACCCAGTAGAAGAGAGAGTTTTGGTAAGTGGGTAAGCATTGGAATAGTGATGGAGCATCACGGGGATGACAGTTTTATCCACAAAAAATTAC

Coding sequence (CDS)

ATGAACTCGCTGGAGCCCGGCGCCAATGCCGGTTCTGTAGAAATGGGAGAAGAATGGTCATCAACAGAAGGAAAAAACGAAGACATATTGTGGGAAGTTCTGTGTGGTGAAACATGCGGAGAAGCCGATATGGAAGAGGCGGCCACTGGAGATGAGACAAAAAATGTGGGTAGAGACAAGGCCACACAGAAGCAAACCGCGGCGGTAGCCATTGATGCAGAGAGATCTCAGTAA

Protein sequence

MNSLEPGANAGSVEMGEEWSSTEGKNEDILWEVLCGETCGEADMEEAATGDETKNVGRDKATQKQTAAVAIDAERSQ

Homology

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BLAST of PI0005712 vs. NCBI nr
Match: KAG6581131.1 (hypothetical protein SDJN03_21133, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 78.2 bits (191), Expect = 3.5e-11
Identity = 42/66 (63.64%), Postives = 46/66 (69.70%), Query Frame = 0


Query: 7  GANAGSVEMGEEWSST-EGKNEDILWEVLCGETCGEADMEEAATGDETKNVGRDKATQKQ 66
          GA AG+ EMGEE  ST +GKNEDI WE LCG T GEAD+ E A GD  K   RDKATQK 
Sbjct: 9  GAGAGAAEMGEERPSTGDGKNEDIFWEALCGGTGGEADIAETAAGDTAKKAARDKATQKN 68

Query: 67 TAAVAI 72
           AA A+
Sbjct: 69 AAAAAV 74

The following BLAST results are available for this feature:

BLAST of PI0005712 vs.


Match Name	E-value	Identity	Description

BLAST of PI0005712 vs.


Match Name	E-value	Identity	Description

BLAST of PI0005712 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6581131.1	3.5e-11	63.64	hypothetical protein SDJN03_21133, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of PI0005712 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0005712.1	PI0005712.1	mRNA