PI0005660 (gene) Melon (PI 482460) v1

Overview


Name	PI0005660
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	RING-type domain-containing protein
Location	chr07: 22071559 .. 22072094 (-)
RNA-Seq Expression	PI0005660
Synteny	PI0005660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTCACCAACAAAAATCCTCATCCTCCATAGCCAACAAAGAAACTTAAAAGCTTCACAACAATGGGAGATCCATTACTGACACTCCTATTCCCCATGGAAACCATGGTCCCTGAATCTCCATCTCCTCCAGCCCTCCACTACACCGTAACCCTAGACCTCCGAACCTCCATTATCTTCTCTTTCTCCATAATCCTCTTCTTCCTCTTCCTCTTCCACGTCCTCAGCGGCTTCCTCCAGTGGTTCCTGGACGTCAGGCGAAGCGGAGGAGGCGGTGAAGACGTGGAGGCGGCAATGGCAGAGGAGCGGAGGATGAAGCGGGCGGAGAAGTTGCCGCCAAAGGTGAGGTTTGGGAGCGAGAAAATGGTGAGGAGGAGGAGTGAGGAGGAATGCGCGATATGTTTGGAGGAGTTTTTGGCCGGAGAAAATTGTCAGGCGTTGCCGGAGTGTGATCATTTTTTTCATTCGGAGTGTATTGATGTATGGTTTAGCAAGAAATTTACGTGCCCTATCTGCCGTAATTGTGTTGCAGCTTAG

mRNA sequence

TCTTCACCAACAAAAATCCTCATCCTCCATAGCCAACAAAGAAACTTAAAAGCTTCACAACAATGGGAGATCCATTACTGACACTCCTATTCCCCATGGAAACCATGGTCCCTGAATCTCCATCTCCTCCAGCCCTCCACTACACCGTAACCCTAGACCTCCGAACCTCCATTATCTTCTCTTTCTCCATAATCCTCTTCTTCCTCTTCCTCTTCCACGTCCTCAGCGGCTTCCTCCAGTGGTTCCTGGACGTCAGGCGAAGCGGAGGAGGCGGTGAAGACGTGGAGGCGGCAATGGCAGAGGAGCGGAGGATGAAGCGGGCGGAGAAGTTGCCGCCAAAGGTGAGGTTTGGGAGCGAGAAAATGGTGAGGAGGAGGAGTGAGGAGGAATGCGCGATATGTTTGGAGGAGTTTTTGGCCGGAGAAAATTGTCAGGCGTTGCCGGAGTGTGATCATTTTTTTCATTCGGAGTGTATTGATGTATGGTTTAGCAAGAAATTTACGTGCCCTATCTGCCGTAATTGTGTTGCAGCTTAG

Coding sequence (CDS)

ATGGGAGATCCATTACTGACACTCCTATTCCCCATGGAAACCATGGTCCCTGAATCTCCATCTCCTCCAGCCCTCCACTACACCGTAACCCTAGACCTCCGAACCTCCATTATCTTCTCTTTCTCCATAATCCTCTTCTTCCTCTTCCTCTTCCACGTCCTCAGCGGCTTCCTCCAGTGGTTCCTGGACGTCAGGCGAAGCGGAGGAGGCGGTGAAGACGTGGAGGCGGCAATGGCAGAGGAGCGGAGGATGAAGCGGGCGGAGAAGTTGCCGCCAAAGGTGAGGTTTGGGAGCGAGAAAATGGTGAGGAGGAGGAGTGAGGAGGAATGCGCGATATGTTTGGAGGAGTTTTTGGCCGGAGAAAATTGTCAGGCGTTGCCGGAGTGTGATCATTTTTTTCATTCGGAGTGTATTGATGTATGGTTTAGCAAGAAATTTACGTGCCCTATCTGCCGTAATTGTGTTGCAGCTTAG

Protein sequence

MGDPLLTLLFPMETMVPESPSPPALHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRSGGGGEDVEAAMAEERRMKRAEKLPPKVRFGSEKMVRRRSEEECAICLEEFLAGENCQALPECDHFFHSECIDVWFSKKFTCPICRNCVAA

Homology

[Close]

BLAST of PI0005660 vs. ExPASy Swiss-Prot
Match: P0C034 (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-11
Identity = 32/71 (45.07%), Postives = 46/71 (64.79%), Query Frame = 0


Query: 85  KRAEKLPPKVRFGSEKMVRRRSEEECAICLEEFLAGENCQALPECDHFFHSECIDVWFSK 144
           K+A ++ P V + S +M     +EEC ICL +F++GE  + LP+C+H FH  CID W  +
Sbjct: 111 KKALRMFPVVSY-SPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQ 170

Query: 145 KFTCPICRNCV 156
             TCP CRNC+
Sbjct: 171 HLTCPKCRNCL 180

[Close]

BLAST of PI0005660 vs. ExPASy Swiss-Prot
Match: Q9XF63 (RING-H2 finger protein ATL3 OS=Arabidopsis thaliana OX=3702 GN=ATL3 PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-11
Identity = 27/47 (57.45%), Postives = 34/47 (72.34%), Query Frame = 0


Query: 109 ECAICLEEFLAGENCQALPECDHFFHSECIDVWFSKKFTCPICRNCV 156
           EC+ICL E + G+  + LP+C+H FH ECID+WF    TCPICRN V
Sbjct: 126 ECSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPICRNTV 172

[Close]

BLAST of PI0005660 vs. ExPASy Swiss-Prot
Match: Q9LS99 (RING-H2 finger protein ATL77 OS=Arabidopsis thaliana OX=3702 GN=ATL77 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.5e-11
Identity = 32/71 (45.07%), Postives = 45/71 (63.38%), Query Frame = 0


Query: 85  KRAEKLPPKVRFGSEKMVRRRSEEECAICLEEFLAGENCQALPECDHFFHSECIDVWFSK 144
           K+A K+ P V +  E  +     EEC ICL +F+AGE  + LP+C+H FH  CID W ++
Sbjct: 106 KKALKMLPVVNYSPEINLPGVG-EECVICLSDFVAGEQLRVLPKCNHGFHLRCIDKWLTQ 165

Query: 145 KFTCPICRNCV 156
             TCP CR+C+
Sbjct: 166 HMTCPKCRHCL 175

[Close]

BLAST of PI0005660 vs. ExPASy Swiss-Prot
Match: P0C035 (RING-H2 finger protein ATL60 OS=Arabidopsis thaliana OX=3702 GN=ATL60 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.7e-11
Identity = 24/49 (48.98%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 109 ECAICLEEFLAGENCQALPECDHFFHSECIDVWFSKKFTCPICRNCVAA 158
           ECA+CL + + G+  + LP C+H FH +CID+WF    TCP+CRN V +
Sbjct: 119 ECAVCLSDLVDGDKARVLPRCNHGFHVDCIDMWFQSHSTCPLCRNTVGS 167

[Close]

BLAST of PI0005660 vs. ExPASy Swiss-Prot
Match: Q6NML0 (E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana OX=3702 GN=ATL76 PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.6e-10
Identity = 31/71 (43.66%), Postives = 44/71 (61.97%), Query Frame = 0


Query: 85  KRAEKLPPKVRFGSEKMVRRRSEEECAICLEEFLAGENCQALPECDHFFHSECIDVWFSK 144
           K+A ++ P V + S +M      EEC ICL +F++GE  + LP+C+H FH  CID W   
Sbjct: 111 KKALRMFPVVSY-SREMNLPGIGEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQH 170

Query: 145 KFTCPICRNCV 156
             TCP CR+C+
Sbjct: 171 HLTCPKCRHCL 180

[Close]

BLAST of PI0005660 vs. ExPASy TrEMBL
Match: A0A0A0L062 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G637730 PE=4 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.1e-78
Identity = 150/159 (94.34%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 1   MGDPLLTLLFPMETMVPESPSPPALHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQW 60
           MGDPLLTLLFPMETMVPESPSPP LHYTVTLD+RTSIIFSFSIILFFLFLFHVLSGFLQW
Sbjct: 1   MGDPLLTLLFPMETMVPESPSPPVLHYTVTLDIRTSIIFSFSIILFFLFLFHVLSGFLQW 60

Query: 61  FLDVRRSGGGGEDVEAAMAEERRMKRAEK--LPPKVRFGSEKMVRRRSEEECAICLEEFL 120
           FLDVRR+GGGGEDVEAAMAEERR+KRAEK  LPP VRFGSEKMVRRRSEEECAICLEEFL
Sbjct: 61  FLDVRRNGGGGEDVEAAMAEERRLKRAEKLPLPPTVRFGSEKMVRRRSEEECAICLEEFL 120

Query: 121 AGENCQALPECDHFFHSECIDVWFSKKFTCPICRNCVAA 158
            GENCQALPEC+HFFHSECIDVWFSKKFTCPICRNCVAA
Sbjct: 121 IGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA 159

[Close]

BLAST of PI0005660 vs. ExPASy TrEMBL
Match: A0A5A7VAT0 (RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G00330 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 1.6e-77
Identity = 150/159 (94.34%), Postives = 152/159 (95.60%), Query Frame = 0


Query: 1   MGDPLLTLLFPMETMVPESPSPPALHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQW 60
           MGDPLLTLLFPMETMVPES SPP LHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQW
Sbjct: 40  MGDPLLTLLFPMETMVPESSSPPVLHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQW 99

Query: 61  FLDVRRSGGGGEDVEAAMAEERRMKRAEK--LPPKVRFGSEKMVRRRSEEECAICLEEFL 120
           FLDVRRSGGG EDVEAAMAEERRMKRAEK  LPP V+FGSEKMVRRRSEEECAICLEEFL
Sbjct: 100 FLDVRRSGGGDEDVEAAMAEERRMKRAEKLPLPPTVKFGSEKMVRRRSEEECAICLEEFL 159

Query: 121 AGENCQALPECDHFFHSECIDVWFSKKFTCPICRNCVAA 158
           AGENCQALPEC HFFHSECI+VWFSKKFTCPICRNCVAA
Sbjct: 160 AGENCQALPECSHFFHSECIEVWFSKKFTCPICRNCVAA 198

[Close]

BLAST of PI0005660 vs. ExPASy TrEMBL
Match: A0A5D3D9M0 (RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003920 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 1.6e-77
Identity = 150/159 (94.34%), Postives = 152/159 (95.60%), Query Frame = 0


Query: 1   MGDPLLTLLFPMETMVPESPSPPALHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQW 60
           MGDPLLTLLFPMETMVPES SPP LHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQW
Sbjct: 1   MGDPLLTLLFPMETMVPESSSPPVLHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQW 60

Query: 61  FLDVRRSGGGGEDVEAAMAEERRMKRAEK--LPPKVRFGSEKMVRRRSEEECAICLEEFL 120
           FLDVRRSGGG EDVEAAMAEERRMKRAEK  LPP V+FGSEKMVRRRSEEECAICLEEFL
Sbjct: 61  FLDVRRSGGGDEDVEAAMAEERRMKRAEKLPLPPTVKFGSEKMVRRRSEEECAICLEEFL 120

Query: 121 AGENCQALPECDHFFHSECIDVWFSKKFTCPICRNCVAA 158
           AGENCQALPEC HFFHSECI+VWFSKKFTCPICRNCVAA
Sbjct: 121 AGENCQALPECSHFFHSECIEVWFSKKFTCPICRNCVAA 159

[Close]

BLAST of PI0005660 vs. ExPASy TrEMBL
Match: A0A1S3BVC7 (RING-H2 finger protein ATL39-like OS=Cucumis melo OX=3656 GN=LOC103493886 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 1.6e-77
Identity = 150/159 (94.34%), Postives = 152/159 (95.60%), Query Frame = 0


Query: 1   MGDPLLTLLFPMETMVPESPSPPALHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQW 60
           MGDPLLTLLFPMETMVPES SPP LHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQW
Sbjct: 1   MGDPLLTLLFPMETMVPESSSPPVLHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQW 60

Query: 61  FLDVRRSGGGGEDVEAAMAEERRMKRAEK--LPPKVRFGSEKMVRRRSEEECAICLEEFL 120
           FLDVRRSGGG EDVEAAMAEERRMKRAEK  LPP V+FGSEKMVRRRSEEECAICLEEFL
Sbjct: 61  FLDVRRSGGGDEDVEAAMAEERRMKRAEKLPLPPTVKFGSEKMVRRRSEEECAICLEEFL 120

Query: 121 AGENCQALPECDHFFHSECIDVWFSKKFTCPICRNCVAA 158
           AGENCQALPEC HFFHSECI+VWFSKKFTCPICRNCVAA
Sbjct: 121 AGENCQALPECSHFFHSECIEVWFSKKFTCPICRNCVAA 159

[Close]

BLAST of PI0005660 vs. ExPASy TrEMBL
Match: A0A6J1IG67 (RING-H2 finger protein ATL39-like OS=Cucurbita maxima OX=3661 GN=LOC111476945 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 3.2e-65
Identity = 129/158 (81.65%), Postives = 141/158 (89.24%), Query Frame = 0


Query: 1   MGDPLLTLLFPMETMVPESPSPPAL-HYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQ 60
           M DPLLTLLFPMETMV ES SPP + HYTVTLDLRTSIIFS +IILFFLFL+HVLSGFLQ
Sbjct: 1   MADPLLTLLFPMETMVSESASPPVIVHYTVTLDLRTSIIFSVTIILFFLFLYHVLSGFLQ 60

Query: 61  WFLDVRRSGGGGEDVEAAMAEERRMKRAEKLPPKVRFGSEKMVRRRSEEECAICLEEFLA 120
           WFL  RR G    DVEA M EERR++RAEK+P  VRFGSE+MVRRRSEEECAICLEEF+A
Sbjct: 61  WFLSGRRGG----DVEAGMGEERRVRRAEKMPAAVRFGSERMVRRRSEEECAICLEEFMA 120

Query: 121 GENCQALPECDHFFHSECIDVWFSKKFTCPICRNCVAA 158
           GENCQALPEC+HFFHS+CIDVWFSKKFTCPICR+C+AA
Sbjct: 121 GENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA 154

[Close]

BLAST of PI0005660 vs. NCBI nr
Match: XP_031740449.1 (RING-H2 finger protein ATL39-like [Cucumis sativus])

HSP 1 Score: 302.4 bits (773), Expect = 2.3e-78
Identity = 150/159 (94.34%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 1   MGDPLLTLLFPMETMVPESPSPPALHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQW 60
           MGDPLLTLLFPMETMVPESPSPP LHYTVTLD+RTSIIFSFSIILFFLFLFHVLSGFLQW
Sbjct: 1   MGDPLLTLLFPMETMVPESPSPPVLHYTVTLDIRTSIIFSFSIILFFLFLFHVLSGFLQW 60

Query: 61  FLDVRRSGGGGEDVEAAMAEERRMKRAEK--LPPKVRFGSEKMVRRRSEEECAICLEEFL 120
           FLDVRR+GGGGEDVEAAMAEERR+KRAEK  LPP VRFGSEKMVRRRSEEECAICLEEFL
Sbjct: 61  FLDVRRNGGGGEDVEAAMAEERRLKRAEKLPLPPTVRFGSEKMVRRRSEEECAICLEEFL 120

Query: 121 AGENCQALPECDHFFHSECIDVWFSKKFTCPICRNCVAA 158
            GENCQALPEC+HFFHSECIDVWFSKKFTCPICRNCVAA
Sbjct: 121 IGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA 159

[Close]

BLAST of PI0005660 vs. NCBI nr
Match: KAA0064334.1 (RING-H2 finger protein ATL39-like [Cucumis melo var. makuwa])

HSP 1 Score: 298.5 bits (763), Expect = 3.4e-77
Identity = 150/159 (94.34%), Postives = 152/159 (95.60%), Query Frame = 0


Query: 1   MGDPLLTLLFPMETMVPESPSPPALHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQW 60
           MGDPLLTLLFPMETMVPES SPP LHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQW
Sbjct: 40  MGDPLLTLLFPMETMVPESSSPPVLHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQW 99

Query: 61  FLDVRRSGGGGEDVEAAMAEERRMKRAEK--LPPKVRFGSEKMVRRRSEEECAICLEEFL 120
           FLDVRRSGGG EDVEAAMAEERRMKRAEK  LPP V+FGSEKMVRRRSEEECAICLEEFL
Sbjct: 100 FLDVRRSGGGDEDVEAAMAEERRMKRAEKLPLPPTVKFGSEKMVRRRSEEECAICLEEFL 159

Query: 121 AGENCQALPECDHFFHSECIDVWFSKKFTCPICRNCVAA 158
           AGENCQALPEC HFFHSECI+VWFSKKFTCPICRNCVAA
Sbjct: 160 AGENCQALPECSHFFHSECIEVWFSKKFTCPICRNCVAA 198

[Close]

BLAST of PI0005660 vs. NCBI nr
Match: XP_008453063.1 (PREDICTED: RING-H2 finger protein ATL39-like [Cucumis melo] >TYK20253.1 RING-H2 finger protein ATL39-like [Cucumis melo var. makuwa])

HSP 1 Score: 298.5 bits (763), Expect = 3.4e-77
Identity = 150/159 (94.34%), Postives = 152/159 (95.60%), Query Frame = 0


Query: 1   MGDPLLTLLFPMETMVPESPSPPALHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQW 60
           MGDPLLTLLFPMETMVPES SPP LHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQW
Sbjct: 1   MGDPLLTLLFPMETMVPESSSPPVLHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQW 60

Query: 61  FLDVRRSGGGGEDVEAAMAEERRMKRAEK--LPPKVRFGSEKMVRRRSEEECAICLEEFL 120
           FLDVRRSGGG EDVEAAMAEERRMKRAEK  LPP V+FGSEKMVRRRSEEECAICLEEFL
Sbjct: 61  FLDVRRSGGGDEDVEAAMAEERRMKRAEKLPLPPTVKFGSEKMVRRRSEEECAICLEEFL 120

Query: 121 AGENCQALPECDHFFHSECIDVWFSKKFTCPICRNCVAA 158
           AGENCQALPEC HFFHSECI+VWFSKKFTCPICRNCVAA
Sbjct: 121 AGENCQALPECSHFFHSECIEVWFSKKFTCPICRNCVAA 159

[Close]

BLAST of PI0005660 vs. NCBI nr
Match: XP_022976597.1 (RING-H2 finger protein ATL39-like [Cucurbita maxima])

HSP 1 Score: 257.7 bits (657), Expect = 6.6e-65
Identity = 129/158 (81.65%), Postives = 141/158 (89.24%), Query Frame = 0


Query: 1   MGDPLLTLLFPMETMVPESPSPPAL-HYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQ 60
           M DPLLTLLFPMETMV ES SPP + HYTVTLDLRTSIIFS +IILFFLFL+HVLSGFLQ
Sbjct: 1   MADPLLTLLFPMETMVSESASPPVIVHYTVTLDLRTSIIFSVTIILFFLFLYHVLSGFLQ 60

Query: 61  WFLDVRRSGGGGEDVEAAMAEERRMKRAEKLPPKVRFGSEKMVRRRSEEECAICLEEFLA 120
           WFL  RR G    DVEA M EERR++RAEK+P  VRFGSE+MVRRRSEEECAICLEEF+A
Sbjct: 61  WFLSGRRGG----DVEAGMGEERRVRRAEKMPAAVRFGSERMVRRRSEEECAICLEEFMA 120

Query: 121 GENCQALPECDHFFHSECIDVWFSKKFTCPICRNCVAA 158
           GENCQALPEC+HFFHS+CIDVWFSKKFTCPICR+C+AA
Sbjct: 121 GENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA 154

[Close]

BLAST of PI0005660 vs. NCBI nr
Match: XP_022936829.1 (RING-H2 finger protein ATL39-like [Cucurbita moschata])

HSP 1 Score: 256.1 bits (653), Expect = 1.9e-64
Identity = 128/158 (81.01%), Postives = 141/158 (89.24%), Query Frame = 0


Query: 1   MGDPLLTLLFPMETMVPESPSPP-ALHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQ 60
           M DPLLTLLFPMETMV ES SPP  +HYTVTLDLRTS+IFS +IILFFLFL+HVLSGFLQ
Sbjct: 1   MADPLLTLLFPMETMVSESASPPVVVHYTVTLDLRTSMIFSVTIILFFLFLYHVLSGFLQ 60

Query: 61  WFLDVRRSGGGGEDVEAAMAEERRMKRAEKLPPKVRFGSEKMVRRRSEEECAICLEEFLA 120
           WFL  RR G    DVEA M EERR++RAEK+P  VRFGSE+MVRRRSEEECAICLEEF+A
Sbjct: 61  WFLSGRRGG----DVEAGMGEERRVRRAEKMPAAVRFGSERMVRRRSEEECAICLEEFMA 120

Query: 121 GENCQALPECDHFFHSECIDVWFSKKFTCPICRNCVAA 158
           GENCQALPEC+HFFHS+CIDVWFSKKFTCPICR+C+AA
Sbjct: 121 GENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA 154

[Close]

BLAST of PI0005660 vs. TAIR 10
Match: AT1G49220.1 (RING/U-box superfamily protein )

HSP 1 Score: 71.2 bits (173), Expect = 8.1e-13
Identity = 32/71 (45.07%), Postives = 46/71 (64.79%), Query Frame = 0


Query: 85  KRAEKLPPKVRFGSEKMVRRRSEEECAICLEEFLAGENCQALPECDHFFHSECIDVWFSK 144
           K+A ++ P V + S +M     +EEC ICL +F++GE  + LP+C+H FH  CID W  +
Sbjct: 111 KKALRMFPVVSY-SPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQ 170

Query: 145 KFTCPICRNCV 156
             TCP CRNC+
Sbjct: 171 HLTCPKCRNCL 180

[Close]

BLAST of PI0005660 vs. TAIR 10
Match: AT1G72310.1 (RING/U-box superfamily protein )

HSP 1 Score: 71.2 bits (173), Expect = 8.1e-13
Identity = 27/47 (57.45%), Postives = 34/47 (72.34%), Query Frame = 0


Query: 109 ECAICLEEFLAGENCQALPECDHFFHSECIDVWFSKKFTCPICRNCV 156
           EC+ICL E + G+  + LP+C+H FH ECID+WF    TCPICRN V
Sbjct: 126 ECSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPICRNTV 172

[Close]

BLAST of PI0005660 vs. TAIR 10
Match: AT3G18773.1 (RING/U-box superfamily protein )

HSP 1 Score: 70.9 bits (172), Expect = 1.1e-12
Identity = 32/71 (45.07%), Postives = 45/71 (63.38%), Query Frame = 0


Query: 85  KRAEKLPPKVRFGSEKMVRRRSEEECAICLEEFLAGENCQALPECDHFFHSECIDVWFSK 144
           K+A K+ P V +  E  +     EEC ICL +F+AGE  + LP+C+H FH  CID W ++
Sbjct: 106 KKALKMLPVVNYSPEINLPGVG-EECVICLSDFVAGEQLRVLPKCNHGFHLRCIDKWLTQ 165

Query: 145 KFTCPICRNCV 156
             TCP CR+C+
Sbjct: 166 HMTCPKCRHCL 175

[Close]

BLAST of PI0005660 vs. TAIR 10
Match: AT1G53820.1 (RING/U-box superfamily protein )

HSP 1 Score: 68.9 bits (167), Expect = 4.0e-12
Identity = 24/49 (48.98%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 109 ECAICLEEFLAGENCQALPECDHFFHSECIDVWFSKKFTCPICRNCVAA 158
           ECA+CL + + G+  + LP C+H FH +CID+WF    TCP+CRN V +
Sbjct: 119 ECAVCLSDLVDGDKARVLPRCNHGFHVDCIDMWFQSHSTCPLCRNTVGS 167

[Close]

BLAST of PI0005660 vs. TAIR 10
Match: AT5G53110.1 (RING/U-box superfamily protein )

HSP 1 Score: 68.9 bits (167), Expect = 4.0e-12
Identity = 26/62 (41.94%), Postives = 37/62 (59.68%), Query Frame = 0


Query: 92  PKVRFGSEKMVRRRSEEECAICLEEFLAGENCQALPECDHFFHSECIDVWFSKKFTCPIC 151
           PK+  G  K + +  +  CAICL E+   E  + +P+C H FH++CID W     TCP+C
Sbjct: 312 PKIVLGESKRLPKVDDATCAICLSEYEPKETLRTIPQCQHCFHADCIDEWLKLNGTCPVC 371

Query: 152 RN 154
           RN
Sbjct: 372 RN 373

The following BLAST results are available for this feature:

BLAST of PI0005660 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C034	1.1e-11	45.07	RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1	[more]
Q9XF63	1.1e-11	57.45	RING-H2 finger protein ATL3 OS=Arabidopsis thaliana OX=3702 GN=ATL3 PE=2 SV=1	[more]
Q9LS99	1.5e-11	45.07	RING-H2 finger protein ATL77 OS=Arabidopsis thaliana OX=3702 GN=ATL77 PE=2 SV=1	[more]
P0C035	5.7e-11	48.98	RING-H2 finger protein ATL60 OS=Arabidopsis thaliana OX=3702 GN=ATL60 PE=2 SV=1	[more]
Q6NML0	1.6e-10	43.66	E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana OX=3702 GN=ATL76 PE=1 ...	[more]

BLAST of PI0005660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L062	1.1e-78	94.34	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G637730 P...	[more]
A0A5A7VAT0	1.6e-77	94.34	RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3D9M0	1.6e-77	94.34	RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3BVC7	1.6e-77	94.34	RING-H2 finger protein ATL39-like OS=Cucumis melo OX=3656 GN=LOC103493886 PE=4 S...	[more]
A0A6J1IG67	3.2e-65	81.65	RING-H2 finger protein ATL39-like OS=Cucurbita maxima OX=3661 GN=LOC111476945 PE...	[more]

BLAST of PI0005660 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031740449.1	2.3e-78	94.34	RING-H2 finger protein ATL39-like [Cucumis sativus]	[more]
KAA0064334.1	3.4e-77	94.34	RING-H2 finger protein ATL39-like [Cucumis melo var. makuwa]	[more]
XP_008453063.1	3.4e-77	94.34	PREDICTED: RING-H2 finger protein ATL39-like [Cucumis melo] >TYK20253.1 RING-H2 ...	[more]
XP_022976597.1	6.6e-65	81.65	RING-H2 finger protein ATL39-like [Cucurbita maxima]	[more]
XP_022936829.1	1.9e-64	81.01	RING-H2 finger protein ATL39-like [Cucurbita moschata]	[more]

BLAST of PI0005660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49220.1	8.1e-13	45.07	RING/U-box superfamily protein	[more]
AT1G72310.1	8.1e-13	57.45	RING/U-box superfamily protein	[more]
AT3G18773.1	1.1e-12	45.07	RING/U-box superfamily protein	[more]
AT1G53820.1	4.0e-12	48.98	RING/U-box superfamily protein	[more]
AT5G53110.1	4.0e-12	41.94	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 110..151 e-value: 3.3E-6 score: 36.6
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 109..152 e-value: 3.4E-13 score: 49.7
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 110..152 score: 12.415513
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 71..156 e-value: 3.9E-19 score: 70.1
None	No IPR available	PANTHER	PTHR14155:SF493	TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED	coord: 82..155
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 82..155
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 105..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0005660.1	PI0005660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane