PI0005644 (gene) Melon (PI 482460) v1

Overview


Name	PI0005644
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Pol protein
Location	chr03: 10993534 .. 10993773 (+)
RNA-Seq Expression	PI0005644
Synteny	PI0005644

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAGGAAATACGTGGCTGACCCGTCTCATGTTTTGGATTATGAACCTTTGGCGATTGATGAGAATTTGAGCTACGTGGAGCATCCAGTTGAGATTTTGGCCAAGGAAATGAAGACGCTTCGTAACCGGGAGATTGCCTTAGTGAAGGTCCTTTGGCGCAACCACCGAGTTGAAGAGGTCACTTGGGAGCGGGAGGATGACATGAGAGCTCGTTACCCAGAGTTGTTCGAGGGTTAG

mRNA sequence

ATGTTGAGGAAATACGTGGCTGACCCGTCTCATGTTTTGGATTATGAACCTTTGGCGATTGATGAGAATTTGAGCTACGTGGAGCATCCAGTTGAGATTTTGGCCAAGGAAATGAAGACGCTTCGTAACCGGGAGATTGCCTTAGTGAAGGTCCTTTGGCGCAACCACCGAGTTGAAGAGGTCACTTGGGAGCGGGAGGATGACATGAGAGCTCGTTACCCAGAGTTGTTCGAGGGTTAG

Coding sequence (CDS)

ATGTTGAGGAAATACGTGGCTGACCCGTCTCATGTTTTGGATTATGAACCTTTGGCGATTGATGAGAATTTGAGCTACGTGGAGCATCCAGTTGAGATTTTGGCCAAGGAAATGAAGACGCTTCGTAACCGGGAGATTGCCTTAGTGAAGGTCCTTTGGCGCAACCACCGAGTTGAAGAGGTCACTTGGGAGCGGGAGGATGACATGAGAGCTCGTTACCCAGAGTTGTTCGAGGGTTAG

Protein sequence

MLRKYVADPSHVLDYEPLAIDENLSYVEHPVEILAKEMKTLRNREIALVKVLWRNHRVEEVTWEREDDMRARYPELFEG

Homology

[Close]

BLAST of PI0005644 vs. ExPASy TrEMBL
Match: A0A5A7VIQ0 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15212G00010 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.3e-32
Identity = 68/79 (86.08%), Postives = 75/79 (94.94%), Query Frame = 0


Query: 1   MLRKYVADPSHVLDYEPLAIDENLSYVEHPVEILAKEMKTLRNREIALVKVLWRNHRVEE 60
           MLRKYV DPSHV+DYEPL IDENLSYVE PVE+LA+E+KTLRN+EI+LVKVLWRNHRVEE
Sbjct: 284 MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEISLVKVLWRNHRVEE 343

Query: 61  VTWEREDDMRARYPELFEG 80
            TWEREDDMR+RYPELFEG
Sbjct: 344 ATWEREDDMRSRYPELFEG 362

[Close]

BLAST of PI0005644 vs. ExPASy TrEMBL
Match: A0A5A7TM23 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold33643G00010 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 8.8e-32
Identity = 68/79 (86.08%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 1  MLRKYVADPSHVLDYEPLAIDENLSYVEHPVEILAKEMKTLRNREIALVKVLWRNHRVEE 60
          MLRKYV DPSHV+DYEPL IDENLSYVE PVE+LA+E+KTLRN+EI LVKVLWRNHRVEE
Sbjct: 1  MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 60

Query: 61 VTWEREDDMRARYPELFEG 80
           TWEREDDMR RYPELFEG
Sbjct: 61 ATWEREDDMRFRYPELFEG 79

[Close]

BLAST of PI0005644 vs. ExPASy TrEMBL
Match: A0A5A7TW62 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold10310G00010 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 8.8e-32
Identity = 68/78 (87.18%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 1   MLRKYVADPSHVLDYEPLAIDENLSYVEHPVEILAKEMKTLRNREIALVKVLWRNHRVEE 60
           MLRKYV DPSHV+DYEPL IDENLSYVE PVE+LA+EMKTLRN+EI LVKVLWRNHRVEE
Sbjct: 103 MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREMKTLRNKEIPLVKVLWRNHRVEE 162

Query: 61  VTWEREDDMRARYPELFE 79
            TWEREDDMR+RYPELFE
Sbjct: 163 ATWEREDDMRSRYPELFE 180

[Close]

BLAST of PI0005644 vs. ExPASy TrEMBL
Match: A0A5A7T8G8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G00730 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.2e-31
Identity = 67/79 (84.81%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 1    MLRKYVADPSHVLDYEPLAIDENLSYVEHPVEILAKEMKTLRNREIALVKVLWRNHRVEE 60
            MLRKYV DPSHV+DYEPL IDENLSY E PVE+LA+E+KTLRN+EI LVKVLWRNHRVEE
Sbjct: 1196 MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 1255

Query: 61   VTWEREDDMRARYPELFEG 80
             TWEREDDMR+RYPELFEG
Sbjct: 1256 ATWEREDDMRSRYPELFEG 1274

[Close]

BLAST of PI0005644 vs. ExPASy TrEMBL
Match: A0A5A7TGS7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold345G00240 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.2e-31
Identity = 67/79 (84.81%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 1    MLRKYVADPSHVLDYEPLAIDENLSYVEHPVEILAKEMKTLRNREIALVKVLWRNHRVEE 60
            MLRKYV DPSHV+DYEPL IDENLSY E PVE+LA+E+KTLRN+EI LVKVLWRNHRVEE
Sbjct: 1596 MLRKYVLDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 1655

Query: 61   VTWEREDDMRARYPELFEG 80
             TWEREDDMR+RYPELFEG
Sbjct: 1656 ATWEREDDMRSRYPELFEG 1674

[Close]

BLAST of PI0005644 vs. NCBI nr
Match: KAA0068212.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 147.5 bits (371), Expect = 4.8e-32
Identity = 68/79 (86.08%), Postives = 75/79 (94.94%), Query Frame = 0


Query: 1   MLRKYVADPSHVLDYEPLAIDENLSYVEHPVEILAKEMKTLRNREIALVKVLWRNHRVEE 60
           MLRKYV DPSHV+DYEPL IDENLSYVE PVE+LA+E+KTLRN+EI+LVKVLWRNHRVEE
Sbjct: 284 MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEISLVKVLWRNHRVEE 343

Query: 61  VTWEREDDMRARYPELFEG 80
            TWEREDDMR+RYPELFEG
Sbjct: 344 ATWEREDDMRSRYPELFEG 362

[Close]

BLAST of PI0005644 vs. NCBI nr
Match: KAA0045469.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 145.6 bits (366), Expect = 1.8e-31
Identity = 68/78 (87.18%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 1   MLRKYVADPSHVLDYEPLAIDENLSYVEHPVEILAKEMKTLRNREIALVKVLWRNHRVEE 60
           MLRKYV DPSHV+DYEPL IDENLSYVE PVE+LA+EMKTLRN+EI LVKVLWRNHRVEE
Sbjct: 103 MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREMKTLRNKEIPLVKVLWRNHRVEE 162

Query: 61  VTWEREDDMRARYPELFE 79
            TWEREDDMR+RYPELFE
Sbjct: 163 ATWEREDDMRSRYPELFE 180

[Close]

BLAST of PI0005644 vs. NCBI nr
Match: KAA0043066.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 145.6 bits (366), Expect = 1.8e-31
Identity = 68/79 (86.08%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 1  MLRKYVADPSHVLDYEPLAIDENLSYVEHPVEILAKEMKTLRNREIALVKVLWRNHRVEE 60
          MLRKYV DPSHV+DYEPL IDENLSYVE PVE+LA+E+KTLRN+EI LVKVLWRNHRVEE
Sbjct: 1  MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 60

Query: 61 VTWEREDDMRARYPELFEG 80
           TWEREDDMR RYPELFEG
Sbjct: 61 ATWEREDDMRFRYPELFEG 79

[Close]

BLAST of PI0005644 vs. NCBI nr
Match: KAA0059963.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 145.2 bits (365), Expect = 2.4e-31
Identity = 67/79 (84.81%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 1   MLRKYVADPSHVLDYEPLAIDENLSYVEHPVEILAKEMKTLRNREIALVKVLWRNHRVEE 60
           MLRKYV DPSHV+DYEPL IDENLSY E PVE+L +EMKTLRN+EI LVKVLWRNHRVEE
Sbjct: 51  MLRKYVPDPSHVVDYEPLEIDENLSYAEQPVEVLTREMKTLRNKEIPLVKVLWRNHRVEE 110

Query: 61  VTWEREDDMRARYPELFEG 80
            TWEREDDMR+RYPELFEG
Sbjct: 111 ATWEREDDMRSRYPELFEG 129

[Close]

BLAST of PI0005644 vs. NCBI nr
Match: KAA0037901.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 145.2 bits (365), Expect = 2.4e-31
Identity = 67/79 (84.81%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 1    MLRKYVADPSHVLDYEPLAIDENLSYVEHPVEILAKEMKTLRNREIALVKVLWRNHRVEE 60
            MLRKYV DPSHV+DYEPL IDENLSY E PVE+LA+E+KTLRN+EI LVKVLWRNHRVEE
Sbjct: 1196 MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 1255

Query: 61   VTWEREDDMRARYPELFEG 80
             TWEREDDMR+RYPELFEG
Sbjct: 1256 ATWEREDDMRSRYPELFEG 1274

The following BLAST results are available for this feature:

BLAST of PI0005644 vs.


Match Name	E-value	Identity	Description

BLAST of PI0005644 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VIQ0	2.3e-32	86.08	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15212G00010 ...	[more]
A0A5A7TM23	8.8e-32	86.08	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold33643G00010 ...	[more]
A0A5A7TW62	8.8e-32	87.18	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold10310G00010 ...	[more]
A0A5A7T8G8	1.2e-31	84.81	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36...	[more]
A0A5A7TGS7	1.2e-31	84.81	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34...	[more]

BLAST of PI0005644 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0068212.1	4.8e-32	86.08	pol protein [Cucumis melo var. makuwa]	[more]
KAA0045469.1	1.8e-31	87.18	pol protein [Cucumis melo var. makuwa]	[more]
KAA0043066.1	1.8e-31	86.08	pol protein [Cucumis melo var. makuwa]	[more]
KAA0059963.1	2.4e-31	84.81	pol protein [Cucumis melo var. makuwa]	[more]
KAA0037901.1	2.4e-31	84.81	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0005644 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46148:SF33	OS05G0296332 PROTEIN	coord: 1..77
None	No IPR available	PANTHER	PTHR46148	FAMILY NOT NAMED	coord: 1..77
IPR016197	Chromo-like domain superfamily	SUPERFAMILY	54160	Chromo domain-like	coord: 8..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0005644.1	PI0005644.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding