PI0005627 (gene) Melon (PI 482460) v1

Overview


Name	PI0005627
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr06: 15814322 .. 15816164 (+)
RNA-Seq Expression	PI0005627
Synteny	PI0005627

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCGAGCTTCGCGAGATACTTCATCTGCAGAAGTACACACTTCCCTTGCCGCATATATACTCATTCGCCAGCTCACTAACCCAGCTCAAGCTTACTCATTTCACAAGACGCATGCAACCTTCATCAGCTCACAAGATGCATCGCAGCCTTCAGCTCCAGCTCGCCTAAAAACGGTTACAACCGCCAAGCCTATCAGGCCAAAGGCCCAAGCCCATTGTAACAAAATAACCGCCAAATAGCAGTTATTTTGCAAATCTAGCCTTCATTAGAAACCTATAAATACCCCACTGTACTTCACTTCAATCAACTTTGAATTTCATGCAAAATCCATAATACAAAGTCTATAGAATTTTTCCTTTATTTTCATCCCTTTGCAATAAAAATTTCCTTACCCTTACTCTGCAAAATTCGCTTTAGAAATTCCTTAATGCAAAGAATCAAGCCAAGGTCGGTCAGGCATGCTTGAAGCTTTACCTTTTCTCATCCGAATTTCCAAGAAGTGATCCATTTGGTAAGAATAGTTACTCTGCTCGCATACTTTAAGAGGTAAAAGAATCTCTTCTCGCATTCTACATTTTGAGTGTGTATTGACTTCTCGCGATTATTCTGAATTGCATTATAGTTTAGTTTTCTAGACCCTAAACTACTTGCGTTATAATTCCTCATTAAATACTGAGCGCTGAGCCATTATTAAATCGTGATTTGCTTGTCATGCTTGATTACCAAATAGCCAGTTAATAAAACTATCTTGCTCTTCTCGCATGATAATACTGCAATACACTCTAATTTTGCTAAGTATACGCTGAGTTGCTTAGTGAATCTTGAATGCTTTACGCGTTTTGATTTGAGTCAATTCTGATCAAATTGTTCTCTGATTGAATCTTCTCGCCTATTACTTCAAAGCTTTAATTCTAATTGTGTTGTGACCGCTGAGGCATCAATTCTCTTAGGTTATTGCTTGCATCTTTAATCGCATACCTCTGTTTGTAACAAGGACAGATCGCTGAGACAGTTCCTTGTTGCGATCAAAGGAAACTCTTATCGCGTAGTGTATTCTCGCAAATTCTCTTAAGAAGTGCATTCTCAAATACTTTTACCTTTATGACAAGTATGTGTACCCAGCGTTACTATCTCTTACCGCATACTAGTTCTAGGTAAGGAAAACAAAAAAAATTCTATAGATTCATATCCACTTCTCTATCTCATTCGCATTTCTTTATTGTTTTCATTTTTCTTTTCTTTTCGCCTAATAGAAATCCCCCCTACTACTAATCATTTTCGTTTCTTGAAGCCATTATTTTACCTTAAACCTAAAATCAACTAGAAACTCAGTGCGCTCCCTTGGGTATGACAACTTTCTTCTCAACAATATTCACCGCTACATCTAGTGCAAACAAACGCGCCAGGGGAAGACGAAGATTTGGGCGATTTGTTAGGATCGCTTGTGTGTAAGCCAGTTTTTGATTACTTTGATCAAGTCCTGGCTCACCAAGTTGATCAGGCGACGCAACTCCAAGCATTGAAGACCTCCGTTGATCAGTTGCAACGCCGTGCCCCGAAAACCTTGTGACGCCCGCCTCTCAAGAAGAAATCAGTGCTCTGAGACGCGAGCTGAAAGACCTTTCGACGAACAACGCCCAGCTTTCAATAGCCATATCCAACCTCACCTCCCTGGTCATTGCACAATCAGAGATGATGCGACAAATAGCTGCGTGGCATGATCGGCAGTTTCGCACACAAATGGAGTATACCTACGCAGCCATTGTTCAACGCGTGCCCGCACCGATCATACCGCCAGATTTAGAAGCACCCTTTCCGCCACTCACGCGTCTTGGTTAA

mRNA sequence

ATGACTCGAGCTTCGCGAGATACTTCATCTGCAGAAGTACACACTTCCCTTGCCGCATATATACTCATTCGCCAGCTCACTAACCCAGCTCAAGCTTACTCATTTCACAAGACGCATGCAACCTTCATCAGCTCACAAGATGCATCGCAGCCTTCAGCTCCAGCTCGCCTAAAAACGGTTACAACCGCCAAGCCTATCAGGCCAAAGGCCCAAGCCCATTTTGCAACGCCGTGCCCCGAAAACCTTGTGACGCCCGCCTCTCAAGAAGAAATCAGTGCTCTGAGACGCGAGCTGAAAGACCTTTCGACGAACAACGCCCAGCTTTCAATAGCCATATCCAACCTCACCTCCCTGGTCATTGCACAATCAGAGATGATGCGACAAATAGCTGCGTGGCATGATCGGCAGTTTCGCACACAAATGGAGTATACCTACGCAGCCATTGTTCAACGCGTGCCCGCACCGATCATACCGCCAGATTTAGAAGCACCCTTTCCGCCACTCACGCGTCTTGGTTAA

Coding sequence (CDS)

ATGACTCGAGCTTCGCGAGATACTTCATCTGCAGAAGTACACACTTCCCTTGCCGCATATATACTCATTCGCCAGCTCACTAACCCAGCTCAAGCTTACTCATTTCACAAGACGCATGCAACCTTCATCAGCTCACAAGATGCATCGCAGCCTTCAGCTCCAGCTCGCCTAAAAACGGTTACAACCGCCAAGCCTATCAGGCCAAAGGCCCAAGCCCATTTTGCAACGCCGTGCCCCGAAAACCTTGTGACGCCCGCCTCTCAAGAAGAAATCAGTGCTCTGAGACGCGAGCTGAAAGACCTTTCGACGAACAACGCCCAGCTTTCAATAGCCATATCCAACCTCACCTCCCTGGTCATTGCACAATCAGAGATGATGCGACAAATAGCTGCGTGGCATGATCGGCAGTTTCGCACACAAATGGAGTATACCTACGCAGCCATTGTTCAACGCGTGCCCGCACCGATCATACCGCCAGATTTAGAAGCACCCTTTCCGCCACTCACGCGTCTTGGTTAA

Protein sequence

MTRASRDTSSAEVHTSLAAYILIRQLTNPAQAYSFHKTHATFISSQDASQPSAPARLKTVTTAKPIRPKAQAHFATPCPENLVTPASQEEISALRRELKDLSTNNAQLSIAISNLTSLVIAQSEMMRQIAAWHDRQFRTQMEYTYAAIVQRVPAPIIPPDLEAPFPPLTRLG

Homology

[Close]

BLAST of PI0005627 vs. ExPASy TrEMBL
Match: A0A5D3DYE2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2030G00280 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.3e-05
Identity = 27/72 (37.50%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 95  RRELKDLSTNNAQLSIAISNLTSLVIAQSEMMRQIAAWHDRQFRTQMEYTYAAIVQRVPA 154
           ++++  +  N  QLS  +SNLT +VI   EM  ++    D+QF+  +EYT+A   QR+P+
Sbjct: 244 QKQVAKIMANQDQLSSTVSNLTCVVIMNFEMTWKMGVQRDKQFKASIEYTHAVFAQRMPS 303

Query: 155 PIIPPDLEAPFP 167
           P I P++E+ +P
Sbjct: 304 PFISPEIESLYP 315

[Close]

BLAST of PI0005627 vs. ExPASy TrEMBL
Match: A0A5A7VF20 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G00430 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.3e-05
Identity = 27/72 (37.50%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 95  RRELKDLSTNNAQLSIAISNLTSLVIAQSEMMRQIAAWHDRQFRTQMEYTYAAIVQRVPA 154
           ++++  +  N  QLS  +SNLT +VI   EM  ++    D+QF+  +EYT+A   QR+P+
Sbjct: 324 QKQVAKIMANQDQLSSTVSNLTCVVIMNFEMTWKMGVQRDKQFKASIEYTHAVFAQRMPS 383

Query: 155 PIIPPDLEAPFP 167
           P I P++E+ +P
Sbjct: 384 PFISPEIESLYP 395

[Close]

BLAST of PI0005627 vs. ExPASy TrEMBL
Match: A0A5D3CT45 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G001110 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.0e-03
Identity = 41/123 (33.33%), Postives = 56/123 (45.53%), Query Frame = 0


Query: 46  QDASQPSAPARLKTVTTAKPIRPKAQAHFATPCPENLVTPASQEEISALRRELKDLSTNN 105
           + AS    P   K V+  +P  P        P   NL  P        + R  K+L T N
Sbjct: 81  EKASASKPPHSKKVVSKRRPNSPHQSPKDNDPLRPNLNVPIIDLSDGDMMR--KELITVN 140

Query: 106 AQLSIAISNLTSLVIAQSEMMRQIAAWHDRQFRTQMEYTYAAIVQRVPAPIIPPDLEAPF 165
             L++             EM  ++    DR+F+  MEYT+A  VQRVP P+IP +LE PF
Sbjct: 141 QLLAL-------------EMQVKMGERRDRKFQASMEYTHAIFVQRVPQPVIPQELETPF 188

Query: 166 PPL 169
           PP+
Sbjct: 201 PPI 188

[Close]

BLAST of PI0005627 vs. NCBI nr
Match: KAA0064129.1 (uncharacterized protein E6C27_scaffold548G00430 [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 1.1e-04
Identity = 27/72 (37.50%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 95  RRELKDLSTNNAQLSIAISNLTSLVIAQSEMMRQIAAWHDRQFRTQMEYTYAAIVQRVPA 154
           ++++  +  N  QLS  +SNLT +VI   EM  ++    D+QF+  +EYT+A   QR+P+
Sbjct: 324 QKQVAKIMANQDQLSSTVSNLTCVVIMNFEMTWKMGVQRDKQFKASIEYTHAVFAQRMPS 383

Query: 155 PIIPPDLEAPFP 167
           P I P++E+ +P
Sbjct: 384 PFISPEIESLYP 395

[Close]

BLAST of PI0005627 vs. NCBI nr
Match: TYK28611.1 (hypothetical protein E5676_scaffold2030G00280 [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 1.1e-04
Identity = 27/72 (37.50%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 95  RRELKDLSTNNAQLSIAISNLTSLVIAQSEMMRQIAAWHDRQFRTQMEYTYAAIVQRVPA 154
           ++++  +  N  QLS  +SNLT +VI   EM  ++    D+QF+  +EYT+A   QR+P+
Sbjct: 244 QKQVAKIMANQDQLSSTVSNLTCVVIMNFEMTWKMGVQRDKQFKASIEYTHAVFAQRMPS 303

Query: 155 PIIPPDLEAPFP 167
           P I P++E+ +P
Sbjct: 304 PFISPEIESLYP 315

The following BLAST results are available for this feature:

BLAST of PI0005627 vs.


Match Name	E-value	Identity	Description

BLAST of PI0005627 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DYE2	5.3e-05	37.50	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VF20	5.3e-05	37.50	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CT45	1.0e-03	33.33	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0005627 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0064129.1	1.1e-04	37.50	uncharacterized protein E6C27_scaffold548G00430 [Cucumis melo var. makuwa]	[more]
TYK28611.1	1.1e-04	37.50	hypothetical protein E5676_scaffold2030G00280 [Cucumis melo var. makuwa]	[more]

BLAST of PI0005627 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 91..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0005627.1	PI0005627.1	mRNA