PI0005595 (gene) Melon (PI 482460) v1

Overview
NamePI0005595
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionProtochlorophyllide reductase
Locationchr01: 3855173 .. 3856033 (+)
RNA-Seq ExpressionPI0005595
SyntenyPI0005595
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAAAGAAAAAAGAAAAAAATCAAAGGTCCTTAAAAAGGTGACCATAAACCTTCATGATAAACACCCACCAACTTCACAATCTTCAAAAATCTCTCATTATTCAACTTTCTTCTCCAAAAATCATCTTCTTTTATATTACAAATTCTCAAGAAGAACAATAATCCGATGTGGCGGTTGGCGGCGGCGGTTAGAAGAAACCTCCACAACATAAGGAAGAGCCCACGAGTGGCAGATGAAAGCATGTACGGCGGCGGAGTTGACGGCGGAGGAAGGGTGGCGGCGGTGGTAGATGGTGACCGGAGAGAAGGTAATTCATATGGGTTTTCTGTGATTTACAGCCTTCTTCGAACCCCATTTTCGATTCTGTCTTGCTTTTCTCAACCACACGTTAATGGCGTCGACGGGATGTGGGTTTCCGGCGAGTTTCCAAGAATTTCGGAAGTTAATCATCTTATGGTAAGCGACAGCATGAGATATGCAATATTAATGTAAATAAAATAAATAAATGGGGTTTCTTCCTCTGTAGTAATTTCGATTGGATCTGGTTTTCAAAAAGAGTCACAAATCGAATGCTATAGAATTATTAATTGGGATCATATACTTTCGGTTTTACCTTTTTTTTTGTTTCCATTTTGTGTTAGAATATTGTATAACAAATTGTGGGTGTGTAACGTTACAGTGGGTTATGCTCGGATTGATGGTTTAAAATTGACTTGGGTTTTGAAATTTAGTCTTATATGTATATGTTCTTGTATACAATAATGTATTAGTTAAAAAGTTACAAAGAAAAAAAAAAGAAGTTAATTTTTGTATATTTGTTTTTAATTTGAATTAGAAGCACATATAGATTCAAAACC

mRNA sequence

AAAAAAAAGAAAAAAGAAAAAAATCAAAGGTCCTTAAAAAGGTGACCATAAACCTTCATGATAAACACCCACCAACTTCACAATCTTCAAAAATCTCTCATTATTCAACTTTCTTCTCCAAAAATCATCTTCTTTTATATTACAAATTCTCAAGAAGAACAATAATCCGATGTGGCGGTTGGCGGCGGCGGTTAGAAGAAACCTCCACAACATAAGGAAGAGCCCACGAGTGGCAGATGAAAGCATGTACGGCGGCGGAGTTGACGGCGGAGGAAGGGTGGCGGCGGTGGTAGATGGTGACCGGAGAGAAGGTAATTCATATGGGTTTTCTGTGATTTACAGCCTTCTTCGAACCCCATTTTCGATTCTGTCTTGCTTTTCTCAACCACACGTTAATGGCGTCGACGGGATGTGGGTTTCCGGCGAGTTTCCAAGAATTTCGGAAGTTAATCATCTTATGGTAAGCGACAGCATGAGATATGCAATATTAATGTAAATAAAATAAATAAATGGGGTTTCTTCCTCTGTAGTAATTTCGATTGGATCTGGTTTTCAAAAAGAGTCACAAATCGAATGCTATAGAATTATTAATTGGGATCATATACTTTCGGTTTTACCTTTTTTTTTGTTTCCATTTTGTGTTAGAATATTGTATAACAAATTGTGGGTGTGTAACGTTACAGTGGGTTATGCTCGGATTGATGGTTTAAAATTGACTTGGGTTTTGAAATTTAGTCTTATATGTATATGTTCTTGTATACAATAATGTATTAGTTAAAAAGTTACAAAGAAAAAAAAAAGAAGTTAATTTTTGTATATTTGTTTTTAATTTGAATTAGAAGCACATATAGATTCAAAACC

Coding sequence (CDS)

ATGTGGCGGTTGGCGGCGGCGGTTAGAAGAAACCTCCACAACATAAGGAAGAGCCCACGAGTGGCAGATGAAAGCATGTACGGCGGCGGAGTTGACGGCGGAGGAAGGGTGGCGGCGGTGGTAGATGGTGACCGGAGAGAAGGTAATTCATATGGGTTTTCTGTGATTTACAGCCTTCTTCGAACCCCATTTTCGATTCTGTCTTGCTTTTCTCAACCACACGTTAATGGCGTCGACGGGATGTGGGTTTCCGGCGAGTTTCCAAGAATTTCGGAAGTTAATCATCTTATGGTAAGCGACAGCATGAGATATGCAATATTAATGTAA

Protein sequence

MWRLAAAVRRNLHNIRKSPRVADESMYGGGVDGGGRVAAVVDGDRREGNSYGFSVIYSLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM
Homology
BLAST of PI0005595 vs. ExPASy TrEMBL
Match: A0A5D3BTM8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold201G00140 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 5.6e-53
Identity = 107/109 (98.17%), Postives = 108/109 (99.08%), Query Frame = 0

Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGGGVDGGGRVAA-VVDGDRREGNSYGFSVIYSL 60
           MWRLAAAVRRNLHNIRKSPRVADESMYGGGVDGGGRVAA VVDGDRREGNSYGFS+IYSL
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGGGVDGGGRVAAVVVDGDRREGNSYGFSMIYSL 60

Query: 61  LRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 109
           LRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM
Sbjct: 61  LRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 109

BLAST of PI0005595 vs. ExPASy TrEMBL
Match: A0A1S3C134 (uncharacterized protein LOC103495667 OS=Cucumis melo OX=3656 GN=LOC103495667 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.2e-47
Identity = 98/104 (94.23%), Postives = 100/104 (96.15%), Query Frame = 0

Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGGGVDGGGRVAA-VVDGDRREGNSYGFSVIYSL 60
           MWRLAAAVRRNLHNIRKSPRVADESMYGGGVDGGGRVAA VVDGDRREGNSYGFS+IYSL
Sbjct: 41  MWRLAAAVRRNLHNIRKSPRVADESMYGGGVDGGGRVAAVVVDGDRREGNSYGFSMIYSL 100

Query: 61  LRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMR 104
           LRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLM S+  R
Sbjct: 101 LRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMQSNLWR 144

BLAST of PI0005595 vs. ExPASy TrEMBL
Match: A0A6J1HZK3 (uncharacterized protein LOC111468352 OS=Cucurbita maxima OX=3661 GN=LOC111468352 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.1e-47
Identity = 98/110 (89.09%), Postives = 103/110 (93.64%), Query Frame = 0

Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMY--GGGVDGGGRVAAVVDGDRREGNSYGFSVIYS 60
           MWRLAAAVRRNLHNIRKSPRVADESMY  GGG DGG   A V+DG+RREGNSYGFS+IY+
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGG---ATVIDGNRREGNSYGFSMIYT 60

Query: 61  LLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 109
           LLRTPFS+LSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM
Sbjct: 61  LLRTPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 107

BLAST of PI0005595 vs. ExPASy TrEMBL
Match: A0A6J1C6U0 (uncharacterized protein LOC111007908 OS=Momordica charantia OX=3673 GN=LOC111007908 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.6e-42
Identity = 91/109 (83.49%), Postives = 97/109 (88.99%), Query Frame = 0

Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMY-GGGVDGGGRVAAVVDGDRREGNSYGFSVIYSL 60
           MWRLAA +RRNLHNIRKSPRVADESMY GGG DGGG VA   + DRR GNSYGFS+IYS+
Sbjct: 1   MWRLAAELRRNLHNIRKSPRVADESMYGGGGGDGGGIVA---ERDRRGGNSYGFSMIYSV 60

Query: 61  LRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 109
           LRTPFS+L CFSQPHVNG DG+WVSGEF RISEVNHLMVSDSMRYAILM
Sbjct: 61  LRTPFSVLCCFSQPHVNGADGLWVSGEFARISEVNHLMVSDSMRYAILM 106

BLAST of PI0005595 vs. ExPASy TrEMBL
Match: A0A6J1ER34 (uncharacterized protein LOC111437033 OS=Cucurbita moschata OX=3662 GN=LOC111437033 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.2e-41
Identity = 91/109 (83.49%), Postives = 96/109 (88.07%), Query Frame = 0

Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMY-GGGVDGGGRVAAVVDGDRREGNSYGFSVIYSL 60
           MWRLAAAVR  LHNIRKSPRVADESM+ GGGVDGGGRV  V  G RRE NS+G S+IY++
Sbjct: 1   MWRLAAAVRSKLHNIRKSPRVADESMFSGGGVDGGGRV--VDGGRRRERNSHGVSIIYNV 60

Query: 61  LRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 109
           LRTPFS LSCFS PHVNGVDGMWVSGEF RISEVNHLMVSDSMRYAILM
Sbjct: 61  LRTPFSFLSCFSHPHVNGVDGMWVSGEFARISEVNHLMVSDSMRYAILM 107

BLAST of PI0005595 vs. NCBI nr
Match: XP_031744820.1 (uncharacterized protein LOC101211016 [Cucumis sativus] >KAE8645720.1 hypothetical protein Csa_020583 [Cucumis sativus])

HSP 1 Score: 219.5 bits (558), Expect = 1.4e-53
Identity = 106/108 (98.15%), Postives = 107/108 (99.07%), Query Frame = 0

Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGGGVDGGGRVAAVVDGDRREGNSYGFSVIYSLL 60
           MWRLAAAVRRNLHNIRKSPRVADESMYGGGVDGGGRV AVVDGDRREGNSYGFS+IYSLL
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGGGVDGGGRVGAVVDGDRREGNSYGFSMIYSLL 60

Query: 61  RTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 109
           RTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM
Sbjct: 61  RTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 108

BLAST of PI0005595 vs. NCBI nr
Match: KAA0059153.1 (uncharacterized protein E6C27_scaffold430G00710 [Cucumis melo var. makuwa] >TYK02535.1 uncharacterized protein E5676_scaffold201G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 216.5 bits (550), Expect = 1.2e-52
Identity = 107/109 (98.17%), Postives = 108/109 (99.08%), Query Frame = 0

Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGGGVDGGGRVAA-VVDGDRREGNSYGFSVIYSL 60
           MWRLAAAVRRNLHNIRKSPRVADESMYGGGVDGGGRVAA VVDGDRREGNSYGFS+IYSL
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGGGVDGGGRVAAVVVDGDRREGNSYGFSMIYSL 60

Query: 61  LRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 109
           LRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM
Sbjct: 61  LRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 109

BLAST of PI0005595 vs. NCBI nr
Match: XP_038888385.1 (uncharacterized protein LOC120078235 [Benincasa hispida])

HSP 1 Score: 215.3 bits (547), Expect = 2.6e-52
Identity = 107/112 (95.54%), Postives = 108/112 (96.43%), Query Frame = 0

Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMY----GGGVDGGGRVAAVVDGDRREGNSYGFSVI 60
           MWRLAAAVRRNLHNIRKSPRVADESMY    GGGVDGGGRVAAVVDGDRREGNSYGFS+I
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGGAGGGGVDGGGRVAAVVDGDRREGNSYGFSMI 60

Query: 61  YSLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 109
           YSLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM
Sbjct: 61  YSLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 112

BLAST of PI0005595 vs. NCBI nr
Match: KAG6572248.1 (hypothetical protein SDJN03_28976, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011878.1 hypothetical protein SDJN02_26785, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 199.1 bits (505), Expect = 1.9e-47
Identity = 98/110 (89.09%), Postives = 104/110 (94.55%), Query Frame = 0

Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMY--GGGVDGGGRVAAVVDGDRREGNSYGFSVIYS 60
           MWRLAAAVRRNLHNIRKSPRVADESMY  GGG DGGGR   V+DG+RR+GNSYGFS+IY+
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGGGR---VIDGNRRDGNSYGFSMIYT 60

Query: 61  LLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 109
           LLRTPFS+LSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM
Sbjct: 61  LLRTPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 107

BLAST of PI0005595 vs. NCBI nr
Match: XP_008455515.1 (PREDICTED: uncharacterized protein LOC103495667 [Cucumis melo])

HSP 1 Score: 198.7 bits (504), Expect = 2.5e-47
Identity = 98/104 (94.23%), Postives = 100/104 (96.15%), Query Frame = 0

Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGGGVDGGGRVAA-VVDGDRREGNSYGFSVIYSL 60
           MWRLAAAVRRNLHNIRKSPRVADESMYGGGVDGGGRVAA VVDGDRREGNSYGFS+IYSL
Sbjct: 41  MWRLAAAVRRNLHNIRKSPRVADESMYGGGVDGGGRVAAVVVDGDRREGNSYGFSMIYSL 100

Query: 61  LRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMR 104
           LRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLM S+  R
Sbjct: 101 LRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMQSNLWR 144

BLAST of PI0005595 vs. TAIR 10
Match: AT5G35732.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04795.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 109.8 bits (273), Expect = 1.4e-24
Identity = 58/108 (53.70%), Postives = 76/108 (70.37%), Query Frame = 0

Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGGGVDGGGRVAAVVDGDRREGNSYGFSVIYSLL 60
           M ++ + +RRNL N+RKSPRVAD++       G G    VV   RR+    GF+ +  ++
Sbjct: 1   MTQMLSVLRRNLQNLRKSPRVADDTELPSSTSGAG--PGVVANGRRD----GFNSV--IM 60

Query: 61  RTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 109
           R PFSI+SCF+ P V+G DG+WVSG++  ISEVNHLMVSDSMRYAILM
Sbjct: 61  RFPFSIISCFAVPRVSGTDGLWVSGDYGSISEVNHLMVSDSMRYAILM 100

BLAST of PI0005595 vs. TAIR 10
Match: AT2G04795.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35732.1); Has 18 Blast hits to 18 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 100.5 bits (249), Expect = 8.6e-22
Identity = 52/108 (48.15%), Postives = 69/108 (63.89%), Query Frame = 0

Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGGGVDGGGRVAAVVDGDRREGNSYGFSVIYSLL 60
           M ++ + +RRNL N+RKSPRVADES            +  V+GD   GN     +    +
Sbjct: 1   MLKMLSILRRNLQNLRKSPRVADES---------ALPSTTVNGDHGGGNGSNGGI----M 60

Query: 61  RTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 109
           + P SI+SCFS P V+  DG+WVSG++ R+SEVNHLMV D MRYA+LM
Sbjct: 61  KFPLSIMSCFSVPRVSRADGVWVSGDYGRVSEVNHLMVCDGMRYALLM 95

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BTM85.6e-5398.17Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3C1341.2e-4794.23uncharacterized protein LOC103495667 OS=Cucumis melo OX=3656 GN=LOC103495667 PE=... [more]
A0A6J1HZK32.1e-4789.09uncharacterized protein LOC111468352 OS=Cucurbita maxima OX=3661 GN=LOC111468352... [more]
A0A6J1C6U02.6e-4283.49uncharacterized protein LOC111007908 OS=Momordica charantia OX=3673 GN=LOC111007... [more]
A0A6J1ER342.2e-4183.49uncharacterized protein LOC111437033 OS=Cucurbita moschata OX=3662 GN=LOC1114370... [more]
Match NameE-valueIdentityDescription
XP_031744820.11.4e-5398.15uncharacterized protein LOC101211016 [Cucumis sativus] >KAE8645720.1 hypothetica... [more]
KAA0059153.11.2e-5298.17uncharacterized protein E6C27_scaffold430G00710 [Cucumis melo var. makuwa] >TYK0... [more]
XP_038888385.12.6e-5295.54uncharacterized protein LOC120078235 [Benincasa hispida][more]
KAG6572248.11.9e-4789.09hypothetical protein SDJN03_28976, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_008455515.12.5e-4794.23PREDICTED: uncharacterized protein LOC103495667 [Cucumis melo][more]
Match NameE-valueIdentityDescription
AT5G35732.11.4e-2453.70unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT2G04795.18.6e-2248.15unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR48165BNAC03G44900D PROTEINcoord: 1..108

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0005595.1PI0005595.1mRNA