PI0005501 (gene) Melon (PI 482460) v1

Overview


Name	PI0005501
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr03: 22392433 .. 22392597 (-)
RNA-Seq Expression	PI0005501
Synteny	PI0005501

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGAACAATGAAGTAGCAGACGACGTTGATGAGGGTGACTCTACATACGCCACCACTAGCGGTGAAAAAATTCACTACATAGAGACGTCGAGTGCATGGAGTCAATGGAGGGACGAGCTTGCCGAAAAAATGTTCAGTGATTGGGAGTTGCGTAATCAGTAA

mRNA sequence

ATGACGAACAATGAAGTAGCAGACGACGTTGATGAGGGTGACTCTACATACGCCACCACTAGCGGTGAAAAAATTCACTACATAGAGACGTCGAGTGCATGGAGTCAATGGAGGGACGAGCTTGCCGAAAAAATGTTCAGTGATTGGGAGTTGCGTAATCAGTAA

Coding sequence (CDS)

ATGACGAACAATGAAGTAGCAGACGACGTTGATGAGGGTGACTCTACATACGCCACCACTAGCGGTGAAAAAATTCACTACATAGAGACGTCGAGTGCATGGAGTCAATGGAGGGACGAGCTTGCCGAAAAAATGTTCAGTGATTGGGAGTTGCGTAATCAGTAA

Protein sequence

MTNNEVADDVDEGDSTYATTSGEKIHYIETSSAWSQWRDELAEKMFSDWELRNQ

Homology

[Close]

BLAST of PI0005501 vs. ExPASy TrEMBL
Match: A0A5D3BL48 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00970 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 9.7e-14
Identity = 38/54 (70.37%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 1   MTNNEVADDVDEGDSTYATTSGEKIHYIETSSAWSQWRDELAEKMFSDWELRNQ 55
           MTN ++ D++DE DST+ATT+ + IHYIETS+ WSQWRD+LAE+MFSDWELRNQ
Sbjct: 161 MTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSDWELRNQ 214

[Close]

BLAST of PI0005501 vs. ExPASy TrEMBL
Match: A0A5A7VJX3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold40G001490 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 9.7e-14
Identity = 38/54 (70.37%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 1   MTNNEVADDVDEGDSTYATTSGEKIHYIETSSAWSQWRDELAEKMFSDWELRNQ 55
           MTN ++ D++DE DST+ATT+ + IHYIETS+ WSQWRD+LAE+MFSDWELRNQ
Sbjct: 254 MTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSDWELRNQ 307

[Close]

BLAST of PI0005501 vs. ExPASy TrEMBL
Match: A0A5A7UIM7 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00420 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.2e-13
Identity = 37/54 (68.52%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 1   MTNNEVADDVDEGDSTYATTSGEKIHYIETSSAWSQWRDELAEKMFSDWELRNQ 55
           MTN ++ D++DE DST+ATT+ + IHYIETS+ WSQWRD+LAE+MF+DWELRNQ
Sbjct: 254 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTDWELRNQ 307

[Close]

BLAST of PI0005501 vs. ExPASy TrEMBL
Match: A0A5D3CA52 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold654G00290 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.8e-13
Identity = 38/54 (70.37%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 1   MTNNEVADDVDEGDSTYATTSGEKIHYIETSSAWSQWRDELAEKMFSDWELRNQ 55
           MTN  + DD+DE DST+ATT G+ IHYIETS+ W+ WRDEL E+MFSDWELRNQ
Sbjct: 74  MTNFNIEDDIDEVDSTHATTVGDDIHYIETSNEWTPWRDELVEEMFSDWELRNQ 127

[Close]

BLAST of PI0005501 vs. ExPASy TrEMBL
Match: A0A5D3CDG6 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002070 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.8e-13
Identity = 38/54 (70.37%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1   MTNNEVADDVDEGDSTYATTSGEKIHYIETSSAWSQWRDELAEKMFSDWELRNQ 55
           MTNNE+ DD+DEGDSTYATT G++I+YIE S+ WS+ RD+LA  MFSDWELR+Q
Sbjct: 195 MTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFSDWELRDQ 248

[Close]

BLAST of PI0005501 vs. NCBI nr
Match: KAA0067470.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 2.0e-13
Identity = 38/54 (70.37%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 1   MTNNEVADDVDEGDSTYATTSGEKIHYIETSSAWSQWRDELAEKMFSDWELRNQ 55
           MTN ++ D++DE DST+ATT+ + IHYIETS+ WSQWRD+LAE+MFSDWELRNQ
Sbjct: 254 MTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSDWELRNQ 307

[Close]

BLAST of PI0005501 vs. NCBI nr
Match: TYJ99699.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 2.0e-13
Identity = 38/54 (70.37%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 1   MTNNEVADDVDEGDSTYATTSGEKIHYIETSSAWSQWRDELAEKMFSDWELRNQ 55
           MTN ++ D++DE DST+ATT+ + IHYIETS+ WSQWRD+LAE+MFSDWELRNQ
Sbjct: 161 MTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSDWELRNQ 214

[Close]

BLAST of PI0005501 vs. NCBI nr
Match: KAA0054126.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 84.0 bits (206), Expect = 4.5e-13
Identity = 37/54 (68.52%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 1   MTNNEVADDVDEGDSTYATTSGEKIHYIETSSAWSQWRDELAEKMFSDWELRNQ 55
           MTN ++ D++DE DST+ATT+ + IHYIETS+ WSQWRD+LAE+MF+DWELRNQ
Sbjct: 254 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTDWELRNQ 307

[Close]

BLAST of PI0005501 vs. NCBI nr
Match: XP_008441953.1 (PREDICTED: uncharacterized protein LOC103485952 [Cucumis melo] >KAA0047737.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 5.8e-13
Identity = 38/54 (70.37%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1   MTNNEVADDVDEGDSTYATTSGEKIHYIETSSAWSQWRDELAEKMFSDWELRNQ 55
           MTNNE+ DD+DEGDSTYATT G++I+YIE S+ WS+ RD+LA  MFSDWELR+Q
Sbjct: 195 MTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFSDWELRDQ 248

[Close]

BLAST of PI0005501 vs. NCBI nr
Match: KAA0060101.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK08415.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 5.8e-13
Identity = 38/54 (70.37%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 1   MTNNEVADDVDEGDSTYATTSGEKIHYIETSSAWSQWRDELAEKMFSDWELRNQ 55
           MTN  + DD+DE DST+ATT G+ IHYIETS+ W+ WRDEL E+MFSDWELRNQ
Sbjct: 74  MTNFNIEDDIDEVDSTHATTVGDDIHYIETSNEWTPWRDELVEEMFSDWELRNQ 127

The following BLAST results are available for this feature:

BLAST of PI0005501 vs.


Match Name	E-value	Identity	Description

BLAST of PI0005501 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BL48	9.7e-14	70.37	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7VJX3	9.7e-14	70.37	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UIM7	2.2e-13	68.52	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5D3CA52	2.8e-13	70.37	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5D3CDG6	2.8e-13	70.37	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of PI0005501 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067470.1	2.0e-13	70.37	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYJ99699.1	2.0e-13	70.37	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]
KAA0054126.1	4.5e-13	68.52	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]
XP_008441953.1	5.8e-13	70.37	PREDICTED: uncharacterized protein LOC103485952 [Cucumis melo] >KAA0047737.1 put...	[more]
KAA0060101.1	5.8e-13	70.37	putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK08415.1 putative nucleas...	[more]

BLAST of PI0005501 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0005501.1	PI0005501.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding