PI0005481 (gene) Melon (PI 482460) v1

Overview
NamePI0005481
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Locationchr05: 16409476 .. 16409976 (+)
RNA-Seq ExpressionPI0005481
SyntenyPI0005481
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGACGGTGAACAGCCACAATTCGAACTTGACCCTGAAATTGAGCGAACCTTTCGGCGTAATCGGCGAAGAGCTAGGCAGAGACAAGCAAGAAGAATGGAAAACAATAACAGAAACGCCCCTCCACCGCATGCTGCCCTAGAACCCAATGCCGCCTACATGGCACATGATTTGGATAGGCCGATTAGATCTTATGCGGCACCCAACCTCTACAACTTTAACCCAGGGATCGCTTACCCTGTGTTCGGCGAAAACGCTAGGTTTGAAATCAAAACTGTCATGCTTCAGATGATTCAGAACACCAGACAATTCGGCGGTCATCTTGGGGAGGATCCACACGAGCATATTAGGAGTTTTTACTCCATCTGCGCTTCCTTCCATATGCCAGGCATCTCACCTAAAGAATTGAGATTCGCTCTCTTCCCGTTAACTTTGAGGGGTGAGGCGAAGAGGTGGGCCAACGCCTTGGAAGATGACGAGGTGGGAACATGGAACTAA

mRNA sequence

ATGAGTGACGGTGAACAGCCACAATTCGAACTTGACCCTGAAATTGAGCGAACCTTTCGGCGTAATCGGCGAAGAGCTAGGCAGAGACAAGCAAGAAGAATGGAAAACAATAACAGAAACGCCCCTCCACCGCATGCTGCCCTAGAACCCAATGCCGCCTACATGGCACATGATTTGGATAGGCCGATTAGATCTTATGCGGCACCCAACCTCTACAACTTTAACCCAGGGATCGCTTACCCTGTGTTCGGCGAAAACGCTAGGTTTGAAATCAAAACTGTCATGCTTCAGATGATTCAGAACACCAGACAATTCGGCGGTCATCTTGGGGAGGATCCACACGAGCATATTAGGAGTTTTTACTCCATCTGCGCTTCCTTCCATATGCCAGGCATCTCACCTAAAGAATTGAGATTCGCTCTCTTCCCGTTAACTTTGAGGGGTGAGGCGAAGAGGTGGGCCAACGCCTTGGAAGATGACGAGGTGGGAACATGGAACTAA

Coding sequence (CDS)

ATGAGTGACGGTGAACAGCCACAATTCGAACTTGACCCTGAAATTGAGCGAACCTTTCGGCGTAATCGGCGAAGAGCTAGGCAGAGACAAGCAAGAAGAATGGAAAACAATAACAGAAACGCCCCTCCACCGCATGCTGCCCTAGAACCCAATGCCGCCTACATGGCACATGATTTGGATAGGCCGATTAGATCTTATGCGGCACCCAACCTCTACAACTTTAACCCAGGGATCGCTTACCCTGTGTTCGGCGAAAACGCTAGGTTTGAAATCAAAACTGTCATGCTTCAGATGATTCAGAACACCAGACAATTCGGCGGTCATCTTGGGGAGGATCCACACGAGCATATTAGGAGTTTTTACTCCATCTGCGCTTCCTTCCATATGCCAGGCATCTCACCTAAAGAATTGAGATTCGCTCTCTTCCCGTTAACTTTGAGGGGTGAGGCGAAGAGGTGGGCCAACGCCTTGGAAGATGACGAGGTGGGAACATGGAACTAA

Protein sequence

MSDGEQPQFELDPEIERTFRRNRRRARQRQARRMENNNRNAPPPHAALEPNAAYMAHDLDRPIRSYAAPNLYNFNPGIAYPVFGENARFEIKTVMLQMIQNTRQFGGHLGEDPHEHIRSFYSICASFHMPGISPKELRFALFPLTLRGEAKRWANALEDDEVGTWN
Homology
BLAST of PI0005481 vs. ExPASy TrEMBL
Match: A0A5A7V2U7 (Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001950 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 9.9e-33
Identity = 72/108 (66.67%), Postives = 82/108 (75.93%), Query Frame = 0

Query: 37  NNRNAPPPHAALEPNAAYMAHDLDRPIRSYAAPNLYNFNPGIAYPVFGENARFEIKTVML 96
           NN+  P   AA   N  Y+A D DRPIRSYA+PNLY+FNPGIAYP F EN RFEIK VML
Sbjct: 5   NNQGIPANQAAQGANPTYLADDRDRPIRSYASPNLYDFNPGIAYPTFSENTRFEIKLVML 64

Query: 97  QMIQNTRQFGGHLGEDPHEHIRSFYSICASFHMPGISPKELRFALFPL 145
           Q+IQN  QF  H  +DPH++IR+FYSICASFHMPGIS +ELRF  F L
Sbjct: 65  QIIQNAGQFRRHPRKDPHDYIRNFYSICASFHMPGISVEELRFTPFRL 112

BLAST of PI0005481 vs. ExPASy TrEMBL
Match: A0A5A7UDN8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00900 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.2e-27
Identity = 63/97 (64.95%), Postives = 74/97 (76.29%), Query Frame = 0

Query: 37  NNRNAPPPHAALEPNAAYMAHDLDRPIRSYAAPNLYNFNPGIAYPVFGENARFEIKTVML 96
           NN+N P      E N AY+AHDLD+PI+SYA+PNLY+FNPGIAY  FGEN  FEIK +ML
Sbjct: 2   NNQNNPAYQNTQEQNPAYLAHDLDKPIKSYASPNLYDFNPGIAYLAFGENVGFEIKHLML 61

Query: 97  QMIQNTRQFGGHLGEDPHEHIRSFYSICASFHMPGIS 134
            M QN  QFGGH  EDP++HIR+FY ICASF+M  IS
Sbjct: 62  YMTQNAGQFGGHPHEDPYDHIRNFYFICASFNMLRIS 98

BLAST of PI0005481 vs. ExPASy TrEMBL
Match: A0A5A7TNS8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G00350 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.5e-25
Identity = 56/108 (51.85%), Postives = 75/108 (69.44%), Query Frame = 0

Query: 51  NAAYMAHDLDRPIRSYAAPNLYNFNPGIAYPVFGENARFEIKTVMLQMIQNTRQFGGHLG 110
           N   +AH+L+ PI  YA+P+LY FN GI YP FG NARF++K  ML MIQ T QFGG+L 
Sbjct: 39  NPILIAHNLNNPINEYASPDLYVFNLGITYPAFG-NARFKMKPTMLHMIQTTVQFGGYLD 98

Query: 111 EDPHEHIRSFYSICASFHMPGISPKELRFALFPLTLRGEAKRWANALE 159
           EDP +HI+S Y +C+SFH+P +S ++L    F  TL+ + K+W   LE
Sbjct: 99  EDPQDHIKSIYVMCSSFHLPCLSQEDLHITYFTFTLKDDIKKWVGTLE 145

BLAST of PI0005481 vs. ExPASy TrEMBL
Match: A0A5D3BVN1 (Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold388G00390 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 2.0e-25
Identity = 62/102 (60.78%), Postives = 74/102 (72.55%), Query Frame = 0

Query: 34  MENNNRNAPPPHAAL--EPNAAYMAHDLDRPIRSYAAPNLYNFNPGIAYPVFGENARFEI 93
           M +N  N  P ++A   + N   +AH+LD PIR+Y + NLY+FN GIAY VFGENA FE+
Sbjct: 1   MASNKNNVVPLNSATQGQGNLTLIAHNLDLPIRAYTSLNLYDFNLGIAYLVFGENAHFEV 60

Query: 94  KTVMLQMIQNTRQFGGHLGEDPHEHIRSFYSICASFHMPGIS 134
           K VMLQMIQ   QF G+ GEDPHEHI+SFYSICASFHM   S
Sbjct: 61  KPVMLQMIQKAGQFDGYQGEDPHEHIKSFYSICASFHMSNFS 102

BLAST of PI0005481 vs. ExPASy TrEMBL
Match: A0A5A7UXZ2 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold137G00610 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.1e-20
Identity = 60/108 (55.56%), Postives = 74/108 (68.52%), Query Frame = 0

Query: 1   MSDGEQPQFELDPEIERTFRRNRRRARQRQARRMEN--NNRNAPPPHAALEPNAAYMAHD 60
           MS+GEQP+F +D EIER F+RNRR+ ++RQ     N  NN+ AP   A    N  Y+AH+
Sbjct: 1   MSEGEQPKFVIDLEIERIFQRNRRQRKRRQRTNKSNSQNNQEAPANQAIQVVNLTYLAHN 60

Query: 61  LDRPIRSYAAPNLYNFNPGIAYPVFGENARFEIKTVMLQMIQ---NTR 104
            DRPIRS  +PNLY FNPGI YP FGEN RF+IK VML ++    NTR
Sbjct: 61  RDRPIRSNTSPNLYGFNPGIDYPAFGENERFDIKPVMLSLLHRKINTR 108

BLAST of PI0005481 vs. NCBI nr
Match: WP_217833177.1 (retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 168.3 bits (425), Expect = 5.5e-38
Identity = 84/182 (46.15%), Postives = 112/182 (61.54%), Query Frame = 0

Query: 1   MSDGEQPQFELDPEIERTFRRNRRRARQRQARRMENNNRNA-----------------PP 60
           MS+G+ P F++DPEIERTFRR  R+ +QR++ +    N +A                   
Sbjct: 2   MSEGDNPTFDIDPEIERTFRRRIRQIKQRRSNQTIEENMDAQYNQPQAPQAGVRQNANAQ 61

Query: 61  PHAALEPNAAYMAHDLDRPIRSYAAPNLYNFNPGIAYPVFGENARFEIKTVMLQMIQNTR 120
            HA  + N   +AHD +RP+R YA+PNLYNF PGI  P F  N RFE+K VMLQM+Q   
Sbjct: 62  EHANYDTNPIVLAHDRNRPMREYASPNLYNFAPGILQPTFEGNGRFEMKPVMLQMLQAAG 121

Query: 121 QFGGHLGEDPHEHIRSFYSICASFHMPGISPKELRFALFPLTLRGEAKRWANALEDDEVG 166
           QFGG  GEDPH H++SF  IC++F M G+    +R  LFP +LR EA++WA + E  E+ 
Sbjct: 122 QFGGATGEDPHAHLKSFLEICSAFPMAGVPQDSIRLTLFPFSLRDEARQWAYSFEPGEIT 181

BLAST of PI0005481 vs. NCBI nr
Match: XP_038887458.1 (uncharacterized protein LOC120077591 [Benincasa hispida])

HSP 1 Score: 152.9 bits (385), Expect = 2.4e-33
Identity = 80/167 (47.90%), Postives = 113/167 (67.66%), Query Frame = 0

Query: 1   MSDGEQPQFELDPEIERTF--RRNRRRARQRQARRMENNNRNAPPPHAALE---PNAAYM 60
           MS    P+FE +PEI+ TF  R ++ RA +R+    +NNN  AP  +  +     +  ++
Sbjct: 1   MSTRTDPEFEANPEIDHTFRTRAHQNRAWRRRINMADNNNNEAPEGNQGVNRPVQDPVFL 60

Query: 61  AHDLDRPIRSYAAPNLYNFNPGIAYPVFGENARFEIKTVMLQMIQNTRQFGGHLGEDPHE 120
           A D + PIR+YAAPNLY+F+PGI+ P+  ENARFEIK VM+QMIQN RQF     E+PH 
Sbjct: 61  AADHNIPIRNYAAPNLYDFSPGISRPIVEENARFEIKPVMVQMIQNMRQFESLQCENPHA 120

Query: 121 HIRSFYSICASFHMPGISPKELRFALFPLTLRGEAKRWANALEDDEV 163
           H+  F  +C++F +PGI+P  +R  LFP TLR +AKRWA++LE +E+
Sbjct: 121 HLTIFVEMCSTFSIPGITPVGIRLYLFPYTLRDKAKRWAHSLEANEI 167

BLAST of PI0005481 vs. NCBI nr
Match: KAA0062403.1 (putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa] >TYK26578.1 putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 149.8 bits (377), Expect = 2.0e-32
Identity = 72/108 (66.67%), Postives = 82/108 (75.93%), Query Frame = 0

Query: 37  NNRNAPPPHAALEPNAAYMAHDLDRPIRSYAAPNLYNFNPGIAYPVFGENARFEIKTVML 96
           NN+  P   AA   N  Y+A D DRPIRSYA+PNLY+FNPGIAYP F EN RFEIK VML
Sbjct: 5   NNQGIPANQAAQGANPTYLADDRDRPIRSYASPNLYDFNPGIAYPTFSENTRFEIKLVML 64

Query: 97  QMIQNTRQFGGHLGEDPHEHIRSFYSICASFHMPGISPKELRFALFPL 145
           Q+IQN  QF  H  +DPH++IR+FYSICASFHMPGIS +ELRF  F L
Sbjct: 65  QIIQNAGQFRRHPRKDPHDYIRNFYSICASFHMPGISVEELRFTPFRL 112

BLAST of PI0005481 vs. NCBI nr
Match: XP_038880318.1 (uncharacterized protein LOC120071956 [Benincasa hispida])

HSP 1 Score: 133.7 bits (335), Expect = 1.5e-27
Identity = 59/104 (56.73%), Postives = 79/104 (75.96%), Query Frame = 0

Query: 63  IRSYAAPNLYNFNPGIAYPVFGENARFEIKTVMLQMIQNTRQFGGHLGEDPHEHIRSFYS 122
           +R+YAAP LY+F+P IA P   ENARFEIK+VMLQMIQN RQFGG  GEDP+  + SF  
Sbjct: 1   MRNYAAPKLYDFSPRIARPTVEENARFEIKSVMLQMIQNARQFGGLQGEDPYADLTSFVE 60

Query: 123 ICASFHMPGISPKELRFALFPLTLRGEAKRWANALEDDEVGTWN 167
           +C +F +PG++P+ +R   FP TLR EAKRWA++LE ++  +W+
Sbjct: 61  MCNTFSIPGVTPEGIRLYRFPYTLRDEAKRWAHSLEPNKTNSWD 104

BLAST of PI0005481 vs. NCBI nr
Match: KAA0051815.1 (hypothetical protein E6C27_scaffold60G002300 [Cucumis melo var. makuwa] >TYK21429.1 hypothetical protein E5676_scaffold609G00900 [Cucumis melo var. makuwa])

HSP 1 Score: 132.9 bits (333), Expect = 2.6e-27
Identity = 63/97 (64.95%), Postives = 74/97 (76.29%), Query Frame = 0

Query: 37  NNRNAPPPHAALEPNAAYMAHDLDRPIRSYAAPNLYNFNPGIAYPVFGENARFEIKTVML 96
           NN+N P      E N AY+AHDLD+PI+SYA+PNLY+FNPGIAY  FGEN  FEIK +ML
Sbjct: 2   NNQNNPAYQNTQEQNPAYLAHDLDKPIKSYASPNLYDFNPGIAYLAFGENVGFEIKHLML 61

Query: 97  QMIQNTRQFGGHLGEDPHEHIRSFYSICASFHMPGIS 134
            M QN  QFGGH  EDP++HIR+FY ICASF+M  IS
Sbjct: 62  YMTQNAGQFGGHPHEDPYDHIRNFYFICASFNMLRIS 98

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V2U79.9e-3366.67Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=... [more]
A0A5A7UDN81.2e-2764.95Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TNS81.5e-2551.85Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BVN12.0e-2560.78Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=... [more]
A0A5A7UXZ21.1e-2055.56Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak... [more]
Match NameE-valueIdentityDescription
WP_217833177.15.5e-3846.15retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 70... [more]
XP_038887458.12.4e-3347.90uncharacterized protein LOC120077591 [Benincasa hispida][more]
KAA0062403.12.0e-3266.67putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa] >TYK... [more]
XP_038880318.11.5e-2756.73uncharacterized protein LOC120071956 [Benincasa hispida][more]
KAA0051815.12.6e-2764.95hypothetical protein E6C27_scaffold60G002300 [Cucumis melo var. makuwa] >TYK2142... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..47

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0005481.1PI0005481.1mRNA