PI0005394 (gene) Melon (PI 482460) v1

Overview


Name	PI0005394
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag/pol protein
Location	chr06: 17565902 .. 17566249 (+)
RNA-Seq Expression	PI0005394
Synteny	PI0005394

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGTGGTAGAAAAATTCTACGCCGCTAAGCTCAATGCTGAGGAGTTTAGCATGGAAATCAGTGGAAGGGTGCTGAGCTTCAACGCGGAGACCATTAATGCTCTATATGACTTGCCCAATGATGTTGAGACTCCTGGGCATGAATATGTGGTCAGCACAACAAAGAAAATGGTCCGTGAAGCGTTAGAAGTCATCGCCTGGCCTAGAGCCGCATGGGAAGTTACGCCGACGGGGAAAGATCAACTTTATCCACACCAGTTGAATTTCGTTATAACTGTCATCATGCTTAAGCGAGCTAATTCGCTTGGCCAGCGTTGGTCGCCAATTACTCGAGAGAGTAAGTAG

mRNA sequence

ATGGGTGTGGTAGAAAAATTCTACGCCGCTAAGCTCAATGCTGAGGAGTTTAGCATGGAAATCAGTGGAAGGGTGCTGAGCTTCAACGCGGAGACCATTAATGCTCTATATGACTTGCCCAATGATGTTGAGACTCCTGGGCATGAATATGTGGTCAGCACAACAAAGAAAATGGTCCGTGAAGCGTTAGAAGTCATCGCCTGGCCTAGAGCCGCATGGGAAGTTACGCCGACGGGGAAAGATCAACTTTATCCACACCAGTTGAATTTCGTTATAACTGTCATCATGCTTAAGCGAGCTAATTCGCTTGGCCAGCGTTGGTCGCCAATTACTCGAGAGAGTAAGTAG

Coding sequence (CDS)

ATGGGTGTGGTAGAAAAATTCTACGCCGCTAAGCTCAATGCTGAGGAGTTTAGCATGGAAATCAGTGGAAGGGTGCTGAGCTTCAACGCGGAGACCATTAATGCTCTATATGACTTGCCCAATGATGTTGAGACTCCTGGGCATGAATATGTGGTCAGCACAACAAAGAAAATGGTCCGTGAAGCGTTAGAAGTCATCGCCTGGCCTAGAGCCGCATGGGAAGTTACGCCGACGGGGAAAGATCAACTTTATCCACACCAGTTGAATTTCGTTATAACTGTCATCATGCTTAAGCGAGCTAATTCGCTTGGCCAGCGTTGGTCGCCAATTACTCGAGAGAGTAAGTAG

Protein sequence

MGVVEKFYAAKLNAEEFSMEISGRVLSFNAETINALYDLPNDVETPGHEYVVSTTKKMVREALEVIAWPRAAWEVTPTGKDQLYPHQLNFVITVIMLKRANSLGQRWSPITRESK

Homology

[Close]

BLAST of PI0005394 vs. ExPASy TrEMBL
Match: A0A5A7SQ81 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00070 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 3.2e-14
Identity = 43/92 (46.74%), Postives = 55/92 (59.78%), Query Frame = 0


Query: 3   VVEKFYAAKLNAEEFSMEISGRVLSFNAETINALYDLPNDVETPGHEYVVSTTKKMVREA 62
           VV KFYA+  N  E+   +  +   FN E IN LY+ P D ETP H  + +T K+   EA
Sbjct: 90  VVRKFYASDHNQAEYYAIMDEKSAYFNIEAINKLYNFPFDAETPDHVLITATLKRQAMEA 149

Query: 63  LEVIAWPRAAWEVTPTGKDQLYPHQLNFVITV 95
           LE IAW  A +++TPTGK  LYPHQL    +V
Sbjct: 150 LETIAWLGAEYDITPTGKYLLYPHQLTIEASV 181

[Close]

BLAST of PI0005394 vs. ExPASy TrEMBL
Match: A0A5A7URT6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G00140 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.0e-12
Identity = 39/86 (45.35%), Postives = 52/86 (60.47%), Query Frame = 0


Query: 3   VVEKFYAAKLNAEEFSMEISGRVLSFNAETINALYDLPNDVETPGHEYVVSTTKKMVREA 62
           VV KFY + LN  E+ + + G+ + FN E IN LYDLP D ETP    + +T K+  REA
Sbjct: 66  VVRKFYTSDLNQAEYYVIMDGKSIYFNVEAINKLYDLPFDAETPEQALITTTLKRQAREA 125

Query: 63  LEVIAWPRAAWEVTPTGKDQLYPHQL 89
           L+ I W     ++T TG   LYPH+L
Sbjct: 126 LKTIVWLGVECDITLTGNYLLYPHRL 151

[Close]

BLAST of PI0005394 vs. ExPASy TrEMBL
Match: A0A5A7U4E3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46449G00020 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 3.3e-11
Identity = 36/86 (41.86%), Postives = 51/86 (59.30%), Query Frame = 0


Query: 3   VVEKFYAAKLNAEEFSMEISGRVLSFNAETINALYDLPNDVETPGHEYVVSTTKKMVREA 62
           V+ KFY + LN  E+ + + G+ + FN E IN LYDLP D +TP    + +T K+  REA
Sbjct: 109 VIRKFYTSDLNQAEYYVIMDGKSIYFNVEAINKLYDLPFDAKTPEQALITTTLKRQAREA 168

Query: 63  LEVIAWPRAAWEVTPTGKDQLYPHQL 89
           L+ I W     ++T T    LYPH+L
Sbjct: 169 LKTIVWLGVECDITLTRNYLLYPHRL 194

[Close]

BLAST of PI0005394 vs. ExPASy TrEMBL
Match: A0A5A7V6M5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold683G00020 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 5.6e-11
Identity = 40/87 (45.98%), Postives = 49/87 (56.32%), Query Frame = 0


Query: 1  MGVVEKFYAAKLNAEEFSMEISGRVLSFNAETINALYDLPNDVETPGHEYVVSTTKKMVR 60
          M VV KFY  K N  +  + I      FN E IN LY+ PND E  G E V  +TK + +
Sbjct: 5  MDVVHKFYDVKFNPSDLFITIEDEKFYFNVEVINELYNSPNDAEYLGQEIVTKSTKGLAK 64

Query: 61 EALEVIAWPRAAWEVTPTG-KDQLYPH 87
          EAL+V+AWP    EV P   + QLYPH
Sbjct: 65 EALKVVAWPGIMSEVKPMKLRYQLYPH 91

[Close]

BLAST of PI0005394 vs. ExPASy TrEMBL
Match: A0A5D3C3P6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold6952G00010 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 5.6e-11
Identity = 40/87 (45.98%), Postives = 49/87 (56.32%), Query Frame = 0


Query: 1  MGVVEKFYAAKLNAEEFSMEISGRVLSFNAETINALYDLPNDVETPGHEYVVSTTKKMVR 60
          M VV KFY  K N  +  + I      FN E IN LY+ PND E  G E V  +TK + +
Sbjct: 5  MDVVHKFYDVKFNPSDLFITIKDEKFYFNVEVINELYNSPNDAEYLGQEIVTKSTKGLAK 64

Query: 61 EALEVIAWPRAAWEVTPTG-KDQLYPH 87
          EAL+V+AWP    EV P   + QLYPH
Sbjct: 65 EALKVVAWPGIMSEVKPMKLRYQLYPH 91

[Close]

BLAST of PI0005394 vs. NCBI nr
Match: KAA0031701.1 (hypothetical protein E6C27_scaffold139G004850 [Cucumis melo var. makuwa] >TYK04411.1 hypothetical protein E5676_scaffold409G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 87.8 bits (216), Expect = 6.6e-14
Identity = 43/92 (46.74%), Postives = 55/92 (59.78%), Query Frame = 0


Query: 3   VVEKFYAAKLNAEEFSMEISGRVLSFNAETINALYDLPNDVETPGHEYVVSTTKKMVREA 62
           VV KFYA+  N  E+   +  +   FN E IN LY+ P D ETP H  + +T K+   EA
Sbjct: 90  VVRKFYASDHNQAEYYAIMDEKSAYFNIEAINKLYNFPFDAETPDHVLITATLKRQAMEA 149

Query: 63  LEVIAWPRAAWEVTPTGKDQLYPHQLNFVITV 95
           LE IAW  A +++TPTGK  LYPHQL    +V
Sbjct: 150 LETIAWLGAEYDITPTGKYLLYPHQLTIEASV 181

[Close]

BLAST of PI0005394 vs. NCBI nr
Match: KAA0057357.1 (hypothetical protein E6C27_scaffold280G002180 [Cucumis melo var. makuwa] >TYK30046.1 hypothetical protein E5676_scaffold216G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 82.8 bits (203), Expect = 2.1e-12
Identity = 39/86 (45.35%), Postives = 52/86 (60.47%), Query Frame = 0


Query: 3   VVEKFYAAKLNAEEFSMEISGRVLSFNAETINALYDLPNDVETPGHEYVVSTTKKMVREA 62
           VV KFY + LN  E+ + + G+ + FN E IN LYDLP D ETP    + +T K+  REA
Sbjct: 66  VVRKFYTSDLNQAEYYVIMDGKSIYFNVEAINKLYDLPFDAETPEQALITTTLKRQAREA 125

Query: 63  LEVIAWPRAAWEVTPTGKDQLYPHQL 89
           L+ I W     ++T TG   LYPH+L
Sbjct: 126 LKTIVWLGVECDITLTGNYLLYPHRL 151

[Close]

BLAST of PI0005394 vs. NCBI nr
Match: KAA0050753.1 (hypothetical protein E6C27_scaffold46449G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 6.8e-11
Identity = 36/86 (41.86%), Postives = 51/86 (59.30%), Query Frame = 0


Query: 3   VVEKFYAAKLNAEEFSMEISGRVLSFNAETINALYDLPNDVETPGHEYVVSTTKKMVREA 62
           V+ KFY + LN  E+ + + G+ + FN E IN LYDLP D +TP    + +T K+  REA
Sbjct: 109 VIRKFYTSDLNQAEYYVIMDGKSIYFNVEAINKLYDLPFDAKTPEQALITTTLKRQAREA 168

Query: 63  LEVIAWPRAAWEVTPTGKDQLYPHQL 89
           L+ I W     ++T T    LYPH+L
Sbjct: 169 LKTIVWLGVECDITLTRNYLLYPHRL 194

[Close]

BLAST of PI0005394 vs. NCBI nr
Match: TYK05842.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 1.2e-10
Identity = 40/87 (45.98%), Postives = 49/87 (56.32%), Query Frame = 0


Query: 1  MGVVEKFYAAKLNAEEFSMEISGRVLSFNAETINALYDLPNDVETPGHEYVVSTTKKMVR 60
          M VV KFY  K N  +  + I      FN E IN LY+ PND E  G E V  +TK + +
Sbjct: 5  MDVVHKFYDVKFNPSDLFITIKDEKFYFNVEVINELYNSPNDAEYLGQEIVTKSTKGLAK 64

Query: 61 EALEVIAWPRAAWEVTPTG-KDQLYPH 87
          EAL+V+AWP    EV P   + QLYPH
Sbjct: 65 EALKVVAWPGIMSEVKPMKLRYQLYPH 91

[Close]

BLAST of PI0005394 vs. NCBI nr
Match: KAA0062900.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 1.2e-10
Identity = 40/87 (45.98%), Postives = 49/87 (56.32%), Query Frame = 0


Query: 1  MGVVEKFYAAKLNAEEFSMEISGRVLSFNAETINALYDLPNDVETPGHEYVVSTTKKMVR 60
          M VV KFY  K N  +  + I      FN E IN LY+ PND E  G E V  +TK + +
Sbjct: 5  MDVVHKFYDVKFNPSDLFITIEDEKFYFNVEVINELYNSPNDAEYLGQEIVTKSTKGLAK 64

Query: 61 EALEVIAWPRAAWEVTPTG-KDQLYPH 87
          EAL+V+AWP    EV P   + QLYPH
Sbjct: 65 EALKVVAWPGIMSEVKPMKLRYQLYPH 91

The following BLAST results are available for this feature:

BLAST of PI0005394 vs.


Match Name	E-value	Identity	Description

BLAST of PI0005394 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SQ81	3.2e-14	46.74	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7URT6	1.0e-12	45.35	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U4E3	3.3e-11	41.86	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7V6M5	5.6e-11	45.98	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold683G0002...	[more]
A0A5D3C3P6	5.6e-11	45.98	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold6952G000...	[more]

BLAST of PI0005394 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031701.1	6.6e-14	46.74	hypothetical protein E6C27_scaffold139G004850 [Cucumis melo var. makuwa] >TYK044...	[more]
KAA0057357.1	2.1e-12	45.35	hypothetical protein E6C27_scaffold280G002180 [Cucumis melo var. makuwa] >TYK300...	[more]
KAA0050753.1	6.8e-11	41.86	hypothetical protein E6C27_scaffold46449G00020 [Cucumis melo var. makuwa]	[more]
TYK05842.1	1.2e-10	45.98	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0062900.1	1.2e-10	45.98	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0005394 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0005394.1	PI0005394.1	mRNA