PI0005381 (gene) Melon (PI 482460) v1

Overview


Name	PI0005381
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr06: 25147692 .. 25148464 (-)
RNA-Seq Expression	PI0005381
Synteny	PI0005381

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCTCAAACGCCGAAACCCACTTTTGTCGCTCACTTTTGTCGCTCGTCGCAAGTCTCCAGTAACCCATCGTTTCAGATCCCATTCCGTCACTCAATTATCCCGAAACCCACCTCCGTTCCAAATCTGTTCCATCGACACTCATTCTTTCGACGTCGCGAAACGCAAATCTGACTCCAGTTGTGTTTCAGATTAGTCCACCACGAAACTAAACAAAGTTTGTGCCAAACGATTTCATCGTTTTAGATCTCACGCTCTTTTTCTATTTCAGTCCTCCTCTATTCAACAAAAGACCTTGCTGTTCCGAGATCAATTACTCAGATCTGTAACTTTAATTCATATTTGTGCTTGTGTTTTGTGATTTCTGTGTAGATGGAGAAAACCGACATTGCTCGTCCTATTAGCACCATCCTTGATGGCTCAAATTACATCACATGGGGCTCACTAAATGAGGAGTTTTTTTATCAGTCGAAAATTATGGTGTATAGTTATTGGAGATATCACCAAACCTGTCAAACCTACTCCTCCGGGAAAAACATCAGTCCAGACACCACTAAGAATGCTGATGCAGACCTCTCTGATGTCACCATTCAAGAGACTACTGTAGAAGACATCAAGTACATTGAAAAACTTGAGGACTGTGATAGCAAAAATCATCAAATCATCACTTGGTTGGGTAACACTTCTATTCCGACTATTCATACTCAATTTGATGCATTTGATACTGCAAAAGAACTTTGGGATTTTGTCCACACGTTTTCAGTCTATTAG

mRNA sequence

ATGGATCTCAAACGCCGAAACCCACTTTTGTCGCTCACTTTTGTCGCTCGTCGCAAGTCTCCAGTAACCCATCGTTTCAGATCCCATTCCGTCACTCAATTATCCCGAAACCCACCTCCGTTCCAAATCTGTTCCATCGACACTCATTCTTTCGACGTCGCGAAACGCAAATCTGACTCCAGTTGTATGGAGAAAACCGACATTGCTCGTCCTATTAGCACCATCCTTGATGGCTCAAATTACATCACATGGGGCTCACTAAATGAGGAGTTTTTTTATCAGTCGAAAATTATGGTGTATAGTTATTGGAGATATCACCAAACCTGTCAAACCTACTCCTCCGGGAAAAACATCAGTCCAGACACCACTAAGAATGCTGATGCAGACCTCTCTGATGTCACCATTCAAGAGACTACTGTAGAAGACATCAAGTACATTGAAAAACTTGAGGACTGTGATAGCAAAAATCATCAAATCATCACTTGGTTGGGTAACACTTCTATTCCGACTATTCATACTCAATTTGATGCATTTGATACTGCAAAAGAACTTTGGGATTTTGTCCACACGTTTTCAGTCTATTAG

Coding sequence (CDS)

ATGGATCTCAAACGCCGAAACCCACTTTTGTCGCTCACTTTTGTCGCTCGTCGCAAGTCTCCAGTAACCCATCGTTTCAGATCCCATTCCGTCACTCAATTATCCCGAAACCCACCTCCGTTCCAAATCTGTTCCATCGACACTCATTCTTTCGACGTCGCGAAACGCAAATCTGACTCCAGTTGTATGGAGAAAACCGACATTGCTCGTCCTATTAGCACCATCCTTGATGGCTCAAATTACATCACATGGGGCTCACTAAATGAGGAGTTTTTTTATCAGTCGAAAATTATGGTGTATAGTTATTGGAGATATCACCAAACCTGTCAAACCTACTCCTCCGGGAAAAACATCAGTCCAGACACCACTAAGAATGCTGATGCAGACCTCTCTGATGTCACCATTCAAGAGACTACTGTAGAAGACATCAAGTACATTGAAAAACTTGAGGACTGTGATAGCAAAAATCATCAAATCATCACTTGGTTGGGTAACACTTCTATTCCGACTATTCATACTCAATTTGATGCATTTGATACTGCAAAAGAACTTTGGGATTTTGTCCACACGTTTTCAGTCTATTAG

Protein sequence

MDLKRRNPLLSLTFVARRKSPVTHRFRSHSVTQLSRNPPPFQICSIDTHSFDVAKRKSDSSCMEKTDIARPISTILDGSNYITWGSLNEEFFYQSKIMVYSYWRYHQTCQTYSSGKNISPDTTKNADADLSDVTIQETTVEDIKYIEKLEDCDSKNHQIITWLGNTSIPTIHTQFDAFDTAKELWDFVHTFSVY

Homology

[Close]

BLAST of PI0005381 vs. ExPASy TrEMBL
Match: A0A5A7TXR0 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00330 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.4e-30
Identity = 72/128 (56.25%), Postives = 89/128 (69.53%), Query Frame = 0


Query: 63  MEKTDIARPISTILDGSNYITWGSLNEEFFYQSKIMVYSYWRYHQTCQTYSSGKNISPDT 122
           MEK  +ARPISTILDG+NYITW      F    K+         +  +     KN S + 
Sbjct: 1   MEKNYVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPTFPMKNTSKNN 60

Query: 123 TKNADADLSDVTIQETTVEDIKYIEKLEDCDSKNHQIITWLGNTSIPTIHTQFDAFDTAK 182
           T++ DA+ SD+ + E TVEDI+YIE+LED DSKNHQIITWLGNTSIP IHTQFD FD+AK
Sbjct: 61  TEHNDANTSDIIVHEPTVEDIQYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDTFDSAK 120

Query: 183 ELWDFVHT 191
           ELW+F++T
Sbjct: 121 ELWNFLYT 128

[Close]

BLAST of PI0005381 vs. ExPASy TrEMBL
Match: A0A1S4E0Y9 (uncharacterized protein LOC107991463 OS=Cucumis melo OX=3656 GN=LOC107991463 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 4.1e-30
Identity = 80/131 (61.07%), Postives = 89/131 (67.94%), Query Frame = 0


Query: 63  MEKTDIARPISTILDGSNYITWGSLNEEFFYQSKIMVYSYWRYHQTCQTYSSGKNISPDT 122
           M+K ++AR ISTILDG+NYITW  L   F    K+     WR      T    K I P T
Sbjct: 1   MQKNNVARLISTILDGTNYITWAHLMRSFLIGRKL-----WR----IVTGDITKPIKPTT 60

Query: 123 -TKNAD--ADLSDVTIQETTVEDIKYIEKLEDCDSKNHQIITWLGNTSIPTIHTQFDAFD 182
             KN D  A+ SDV I ETT EDIKYIE+LED DSKNHQIITWLGNTSIP IHTQ D+FD
Sbjct: 61  PMKNIDNTANTSDVLIHETTAEDIKYIERLEDWDSKNHQIITWLGNTSIPAIHTQLDSFD 120

Query: 183 TAKELWDFVHT 191
           TAKELWDF+ T
Sbjct: 121 TAKELWDFLAT 122

[Close]

BLAST of PI0005381 vs. ExPASy TrEMBL
Match: A0A5D3DG18 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold195G00850 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 8.5e-28
Identity = 71/128 (55.47%), Postives = 83/128 (64.84%), Query Frame = 0


Query: 63  MEKTDIARPISTILDGSNYITWGSLNEEFFYQSKIMVYSYWRYHQTCQTYSSGKNISPDT 122
           MEK D+ARPISTILDG+NYITW      F    K+     WR             ++ D 
Sbjct: 1   MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKL-----WRI------------VTGDI 60

Query: 123 TKNADADLSDVTIQETTVEDIKYIEKLEDCDSKNHQIITWLGNTSIPTIHTQFDAFDTAK 182
           TK          + ET+ EDI+YIE+LED DSKNHQIITWLGNTSIP IHTQFDAFD+AK
Sbjct: 61  TKPVKP-----IVHETSAEDIQYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAK 106

Query: 183 ELWDFVHT 191
           ELWDF++T
Sbjct: 121 ELWDFLYT 106

[Close]

BLAST of PI0005381 vs. ExPASy TrEMBL
Match: A0A5A7SZ66 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G00840 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 8.5e-28
Identity = 71/128 (55.47%), Postives = 83/128 (64.84%), Query Frame = 0


Query: 63  MEKTDIARPISTILDGSNYITWGSLNEEFFYQSKIMVYSYWRYHQTCQTYSSGKNISPDT 122
           MEK D+ARPISTILDG+NYITW      F    K+     WR             ++ D 
Sbjct: 1   MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKL-----WRI------------VTGDI 60

Query: 123 TKNADADLSDVTIQETTVEDIKYIEKLEDCDSKNHQIITWLGNTSIPTIHTQFDAFDTAK 182
           TK          + ET+ EDI+YIE+LED DSKNHQIITWLGNTSIP IHTQFDAFD+AK
Sbjct: 61  TKPVKP-----IVHETSAEDIQYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAK 106

Query: 183 ELWDFVHT 191
           ELWDF++T
Sbjct: 121 ELWDFLYT 106

[Close]

BLAST of PI0005381 vs. ExPASy TrEMBL
Match: A0A1S3BBA1 (uncharacterized protein LOC103488200 OS=Cucumis melo OX=3656 GN=LOC103488200 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 8.5e-28
Identity = 71/128 (55.47%), Postives = 83/128 (64.84%), Query Frame = 0


Query: 63  MEKTDIARPISTILDGSNYITWGSLNEEFFYQSKIMVYSYWRYHQTCQTYSSGKNISPDT 122
           MEK D+ARPISTILDG+NYITW      F    K+     WR             ++ D 
Sbjct: 1   MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKL-----WRI------------VTGDI 60

Query: 123 TKNADADLSDVTIQETTVEDIKYIEKLEDCDSKNHQIITWLGNTSIPTIHTQFDAFDTAK 182
           TK          + ET+ EDI+YIE+LED DSKNHQIITWLGNTSIP IHTQFDAFD+AK
Sbjct: 61  TKPVKP-----IVHETSAEDIQYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAK 106

Query: 183 ELWDFVHT 191
           ELWDF++T
Sbjct: 121 ELWDFLYT 106

[Close]

BLAST of PI0005381 vs. NCBI nr
Match: XP_031739694.1 (uncharacterized protein LOC105434738 [Cucumis sativus])

HSP 1 Score: 152.5 bits (384), Expect = 3.7e-33
Identity = 82/132 (62.12%), Postives = 91/132 (68.94%), Query Frame = 0


Query: 63  MEKTDIARPISTILDGSNYITWGSLNEEFFYQSKIMVYSYWRYHQTCQTYSSGKNISP-- 122
           MEK ++ARPISTILDG+NYITW      F    K+     WR      T    K + P  
Sbjct: 1   MEKHEVARPISTILDGTNYITWAHQMRSFLIGRKL-----WR----IVTGDITKPVKPTP 60

Query: 123 --DTTKNADADLSDVTIQETTVEDIKYIEKLEDCDSKNHQIITWLGNTSIPTIHTQFDAF 182
             DTT+N D D SDVT+QETT E  KYIE+LED DSKNHQIITWLGNTSIP IHTQFDAF
Sbjct: 61  LMDTTENIDTDPSDVTVQETTAETDKYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAF 120

Query: 183 DTAKELWDFVHT 191
           DTAKELWDF+ T
Sbjct: 121 DTAKELWDFLST 123

[Close]

BLAST of PI0005381 vs. NCBI nr
Match: KAA0047794.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 142.9 bits (359), Expect = 2.9e-30
Identity = 72/128 (56.25%), Postives = 89/128 (69.53%), Query Frame = 0


Query: 63  MEKTDIARPISTILDGSNYITWGSLNEEFFYQSKIMVYSYWRYHQTCQTYSSGKNISPDT 122
           MEK  +ARPISTILDG+NYITW      F    K+         +  +     KN S + 
Sbjct: 1   MEKNYVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPTFPMKNTSKNN 60

Query: 123 TKNADADLSDVTIQETTVEDIKYIEKLEDCDSKNHQIITWLGNTSIPTIHTQFDAFDTAK 182
           T++ DA+ SD+ + E TVEDI+YIE+LED DSKNHQIITWLGNTSIP IHTQFD FD+AK
Sbjct: 61  TEHNDANTSDIIVHEPTVEDIQYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDTFDSAK 120

Query: 183 ELWDFVHT 191
           ELW+F++T
Sbjct: 121 ELWNFLYT 128

[Close]

BLAST of PI0005381 vs. NCBI nr
Match: XP_016901896.1 (PREDICTED: uncharacterized protein LOC107991463 [Cucumis melo])

HSP 1 Score: 141.4 bits (355), Expect = 8.5e-30
Identity = 80/131 (61.07%), Postives = 89/131 (67.94%), Query Frame = 0


Query: 63  MEKTDIARPISTILDGSNYITWGSLNEEFFYQSKIMVYSYWRYHQTCQTYSSGKNISPDT 122
           M+K ++AR ISTILDG+NYITW  L   F    K+     WR      T    K I P T
Sbjct: 1   MQKNNVARLISTILDGTNYITWAHLMRSFLIGRKL-----WR----IVTGDITKPIKPTT 60

Query: 123 -TKNAD--ADLSDVTIQETTVEDIKYIEKLEDCDSKNHQIITWLGNTSIPTIHTQFDAFD 182
             KN D  A+ SDV I ETT EDIKYIE+LED DSKNHQIITWLGNTSIP IHTQ D+FD
Sbjct: 61  PMKNIDNTANTSDVLIHETTAEDIKYIERLEDWDSKNHQIITWLGNTSIPAIHTQLDSFD 120

Query: 183 TAKELWDFVHT 191
           TAKELWDF+ T
Sbjct: 121 TAKELWDFLAT 122

[Close]

BLAST of PI0005381 vs. NCBI nr
Match: KAA0043149.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK22647.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 133.7 bits (335), Expect = 1.8e-27
Identity = 71/128 (55.47%), Postives = 83/128 (64.84%), Query Frame = 0


Query: 63  MEKTDIARPISTILDGSNYITWGSLNEEFFYQSKIMVYSYWRYHQTCQTYSSGKNISPDT 122
           MEK D+ARPISTILDG+NYITW      F    K+     WR             ++ D 
Sbjct: 1   MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKL-----WRI------------VTGDI 60

Query: 123 TKNADADLSDVTIQETTVEDIKYIEKLEDCDSKNHQIITWLGNTSIPTIHTQFDAFDTAK 182
           TK          + ET+ EDI+YIE+LED DSKNHQIITWLGNTSIP IHTQFDAFD+AK
Sbjct: 61  TKPVKP-----IVHETSAEDIQYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAK 106

Query: 183 ELWDFVHT 191
           ELWDF++T
Sbjct: 121 ELWDFLYT 106

[Close]

BLAST of PI0005381 vs. NCBI nr
Match: XP_008445037.1 (PREDICTED: uncharacterized protein LOC103488200 [Cucumis melo])

HSP 1 Score: 133.7 bits (335), Expect = 1.8e-27
Identity = 71/128 (55.47%), Postives = 83/128 (64.84%), Query Frame = 0


Query: 63  MEKTDIARPISTILDGSNYITWGSLNEEFFYQSKIMVYSYWRYHQTCQTYSSGKNISPDT 122
           MEK D+ARPISTILDG+NYITW      F    K+     WR             ++ D 
Sbjct: 1   MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKL-----WRI------------VTGDI 60

Query: 123 TKNADADLSDVTIQETTVEDIKYIEKLEDCDSKNHQIITWLGNTSIPTIHTQFDAFDTAK 182
           TK          + ET+ EDI+YIE+LED DSKNHQIITWLGNTSIP IHTQFDAFD+AK
Sbjct: 61  TKPVKP-----IVHETSAEDIQYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAK 106

Query: 183 ELWDFVHT 191
           ELWDF++T
Sbjct: 121 ELWDFLYT 106

The following BLAST results are available for this feature:

BLAST of PI0005381 vs.


Match Name	E-value	Identity	Description

BLAST of PI0005381 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TXR0	1.4e-30	56.25	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S4E0Y9	4.1e-30	61.07	uncharacterized protein LOC107991463 OS=Cucumis melo OX=3656 GN=LOC107991463 PE=...	[more]
A0A5D3DG18	8.5e-28	55.47	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7SZ66	8.5e-28	55.47	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A1S3BBA1	8.5e-28	55.47	uncharacterized protein LOC103488200 OS=Cucumis melo OX=3656 GN=LOC103488200 PE=...	[more]

BLAST of PI0005381 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031739694.1	3.7e-33	62.12	uncharacterized protein LOC105434738 [Cucumis sativus]	[more]
KAA0047794.1	2.9e-30	56.25	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
XP_016901896.1	8.5e-30	61.07	PREDICTED: uncharacterized protein LOC107991463 [Cucumis melo]	[more]
KAA0043149.1	1.8e-27	55.47	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
XP_008445037.1	1.8e-27	55.47	PREDICTED: uncharacterized protein LOC103488200 [Cucumis melo]	[more]

BLAST of PI0005381 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0005381.1	PI0005381.1	mRNA