PI0005369 (gene) Melon (PI 482460) v1

Overview


Name	PI0005369
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr08: 6705488 .. 6707240 (-)
RNA-Seq Expression	PI0005369
Synteny	PI0005369

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCATCAGAACAACTATCAGTCATTTGCACATTCTGAAACCATAACTGACCCCAACTGGTATGCTAATAGTGAAGCATCAAGTCATGTTACCTCAGATTATAACAACCTGACCAATTTAACTGAATATTCAGGTAATGAGTTAGTTATTGTGGAAGATGAAAATGAATTGGCTATAATTCATGTTGGTAGCTCTACATTACACCATGACAATGGTTCTTTAAAACTTCAAAATGTCCTCTGTGTACCTGCTATAACTAAGAACTTGGTTAGTGTGTCTCATGAAGTAAATCTGAAGTCAGTAGATGTGTGGTAGCAAGGAGCTCCTGGTCTAGTGCAATCAGTGCATAAAAATAACAACATTTCTACCTTTATTTTGTCTAAAGTGAGTGTATGTGTTAACTTTGTGATGACCAAAGATAAATACATAGGCGTCCTGGTCATCCTTCTAAAACTCTTGAGTTTATTATCCAGAATTGTAATTTAAACGTTAAATCAAATAAAGTTGAACATTTTTGTGAAGCATGTCAGTTTGGTAAAGTTCTTTATCTTCCGTTTCCTTTATCAACATCACGAGCAACAAATAATTCGATCTTGTACATACTGATGTCGAGGACTAGCCTCGGTTCTTTCACGAGAAGGGTTTAGATATTATGCTATTTTTGTTGATGACTTTAGCAGATACACATGGATATACCCTCTAGGACAAAAGAACAAAAAACTTGTGCCCTTTAGTCACTTTCAACAGCTCATACAAACTCAATTTGGGACTGCAAATTGTTCCCTACAATCTAATAATGGTGGAGAATATGTGAAAATTCATAAAGGATGCTCTTCGTTAGGTATTATTTCGCATTTTACTTGCCCTTACACTTCAAAATAAAATGGTAGATCGGCCTCACACTTTTAGCTCAAGCTTCAATGCCCTTTATCTTTGTTGTGATGTGTTTGTGATTGCTAGACATCTTATAAATGAAATGCCAACACCAGTTCTTCGGGGCCACTCTCCGTCTAAAACATTACTCAATACGACAATGAATTTTTCCTCCATCAAAGTCTTTAGTTGCTCCTGCTATCCATGTCTTTGACCGTATAAAAAACACAAATTTAGCTACCGAACAGAAAGAAGTGTATACTTGGGTCTAAGCACGTCCAATAAGGGTACAAATGTCTTCTGCCCACTGGTCGGTTATTATAGCATGCCATGTCATTTTTAATGAAGATGACTTTCCCTTCTCCAGAGTGTTCGACAATCATAATTCGGTAAATGTTCCAATCTCAAATGCTACCATTATTAATTCTTCATTTTCTGATGTGCAGCAGGTCCCCAATTGTATATTTCCTACGACTACTCTACTTACCAATCCATACCCTCACCTTTACACAATCAACATCCAAGCCCAATTCCCAGCTCACCAAGCCCAATATATATTGCACCAGACCCAATACCAAACTTAACTAATCCATCACTTACATCCCCAAGCTTGACACATGACCACTTAACCAGCCCAAATACTTCCCCAGGCCCATAACTAATTTCCCTAAATACTAATCCCAATCAGGTTGCCCCTTCATCCTTACTTCACCATCACTCTCTTTCCCCCCAATCTCCCACATGCTCATCACATCCAGATGCCTCAATCATTCTAGTCGAAATACCCCTAACCCCACCACCTATTTTCCATGCTCCTCCGCTATCTCATCCGATGGTAACTCGAGGCAAAGCTGGAATATTCAAGCAAAAGGCCTAG

mRNA sequence

ATGGCTCATCAGAACAACTATCAGTCATTTGCACATTCTGAAACCATAACTGACCCCAACTGGTATGCTAATAGTGAAGCATCAAGTCATGTTACCTCAGATTATAACAACCTGACCAATTTAACTGAATATTCAGGTAATGAGTTAGTTATTGTGGAAGATGAAAATGAATTGGCTATAATTCATGTTGGTAGCTCTACATTACACCATGACAATGGTTCTTTAAAACTTCAAAATGTCCTCTGTGTACCTGCTATAACTAAGAACTTGGTTGCCCCTTCATCCTTACTTCACCATCACTCTCTTTCCCCCCAATCTCCCACATGCTCATCACATCCAGATGCCTCAATCATTCTAGTCGAAATACCCCTAACCCCACCACCTATTTTCCATGCTCCTCCGCTATCTCATCCGATGGTAACTCGAGGCAAAGCTGGAATATTCAAGCAAAAGGCCTAG

Coding sequence (CDS)

ATGGCTCATCAGAACAACTATCAGTCATTTGCACATTCTGAAACCATAACTGACCCCAACTGGTATGCTAATAGTGAAGCATCAAGTCATGTTACCTCAGATTATAACAACCTGACCAATTTAACTGAATATTCAGGTAATGAGTTAGTTATTGTGGAAGATGAAAATGAATTGGCTATAATTCATGTTGGTAGCTCTACATTACACCATGACAATGGTTCTTTAAAACTTCAAAATGTCCTCTGTGTACCTGCTATAACTAAGAACTTGGTTGCCCCTTCATCCTTACTTCACCATCACTCTCTTTCCCCCCAATCTCCCACATGCTCATCACATCCAGATGCCTCAATCATTCTAGTCGAAATACCCCTAACCCCACCACCTATTTTCCATGCTCCTCCGCTATCTCATCCGATGGTAACTCGAGGCAAAGCTGGAATATTCAAGCAAAAGGCCTAG

Protein sequence

MAHQNNYQSFAHSETITDPNWYANSEASSHVTSDYNNLTNLTEYSGNELVIVEDENELAIIHVGSSTLHHDNGSLKLQNVLCVPAITKNLVAPSSLLHHHSLSPQSPTCSSHPDASIILVEIPLTPPPIFHAPPLSHPMVTRGKAGIFKQKA

Homology

[Close]

BLAST of PI0005369 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-08
Identity = 33/84 (39.29%), Postives = 52/84 (61.90%), Query Frame = 0


Query: 20  NWYANSEASSHVTSDYNNLTNLTEYSGNELVIVEDENELAIIHVGSSTLHHDNGSLKLQN 79
           NW  +S A+ H+TSD+NNL+    Y+G + V+V D + + I H GS++L   +  L L N
Sbjct: 330 NWLLDSGATHHITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTGSTSLSTKSRPLNLHN 389

Query: 80  VLCVPAITKNLVAPSSLLHHHSLS 104
           +L VP I KNL++   L + + +S
Sbjct: 390 ILYVPNIHKNLISVYRLCNANGVS 413

[Close]

BLAST of PI0005369 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.3e-08
Identity = 33/84 (39.29%), Postives = 52/84 (61.90%), Query Frame = 0


Query: 20  NWYANSEASSHVTSDYNNLTNLTEYSGNELVIVEDENELAIIHVGSSTLHHDNGSLKLQN 79
           NW  +S A+ H+TSD+NNL+    Y+G + V++ D + + I H GS++L   + SL L  
Sbjct: 309 NWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITHTGSASLPTSSRSLDLNK 368

Query: 80  VLCVPAITKNLVAPSSLLHHHSLS 104
           VL VP I KNL++   L + + +S
Sbjct: 369 VLYVPNIHKNLISVYRLCNTNRVS 392

[Close]

BLAST of PI0005369 vs. ExPASy TrEMBL
Match: A0A6J1DCW4 (uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019598 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.7e-13
Identity = 42/77 (54.55%), Postives = 58/77 (75.32%), Query Frame = 0


Query: 14  ETITDPNWYANSEASSHVTSDYNNLTNLTEYSGNELVIVEDENELAIIHVGSSTLHHDNG 73
           ET+ DP+WYA+S A+SHVT++ NN+    +YSG E VIV + N+L+I H+GS+ +H   G
Sbjct: 331 ETVIDPSWYADSGATSHVTANPNNVEQKVDYSGTENVIVANGNKLSISHIGSTNIHASGG 390

Query: 74  SLKLQNVLCVPAITKNL 91
           SLKL++VL VP I KNL
Sbjct: 391 SLKLKDVLRVPDIAKNL 407

[Close]

BLAST of PI0005369 vs. ExPASy TrEMBL
Match: A0A1S4E1U6 (uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 6.1e-13
Identity = 45/91 (49.45%), Postives = 62/91 (68.13%), Query Frame = 0


Query: 6   NYQSFAHSETITDPNWYANSEASSHVTSDYNNLTNLTEYSGNELVIVEDENELAIIHVGS 65
           N   FA  +T+ DPNWY +S A++HVT + +N+TN TEYSG E V V + N L I +VG+
Sbjct: 312 NATPFATPDTVVDPNWYIDSGATNHVTRECSNMTNPTEYSGIEKVTVGNGNRLNISYVGN 371

Query: 66  STLHHDNGSLKLQNVLCVPAITKNLVAPSSL 97
           + L   + SL L+N+LCVP I KNL++ S L
Sbjct: 372 TCLTDGDKSLVLKNILCVPDIAKNLISVSKL 402

[Close]

BLAST of PI0005369 vs. ExPASy TrEMBL
Match: A0A1S4E0Z3 (uncharacterized protein LOC107991455 OS=Cucumis melo OX=3656 GN=LOC107991455 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 6.1e-13
Identity = 50/99 (50.51%), Postives = 65/99 (65.66%), Query Frame = 0


Query: 4   QNNYQSFAHSETITDPNWYANSEASSHVTSDYNNLTNLTEYSGNELVIVEDENELAIIHV 63
           QNN   FA  E + D NWY +S A+++VT DY NL+N+TEYS  E   V + N+L I  V
Sbjct: 53  QNN-NPFAMQEIVVDSNWYVDSGATNYVTLDYLNLSNITEYSSIEHFSVGNGNKLQIHCV 112

Query: 64  GSSTLHHDNGSLKLQNVLCVPAITKNLVAPSSLLHHHSL 103
           G+  L   N SLKL+NVLCVP ITKNLV+ S L   +++
Sbjct: 113 GNFYLSDGNNSLKLENVLCVPNITKNLVSVSKLAQDNNV 150

[Close]

BLAST of PI0005369 vs. ExPASy TrEMBL
Match: A0A803NYU4 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.6e-11
Identity = 40/89 (44.94%), Postives = 60/89 (67.42%), Query Frame = 0


Query: 10  FAHSETITDPNWYANSEASSHVTSDYNNLTNLTEYSGNELVIVEDENELAIIHVGSSTL- 69
           FA  ET+ DP WYA+S A+ H+T+D+NNLT   +Y G++  +V ++  + I H GS++L 
Sbjct: 254 FASPETVADPAWYADSGATYHITTDFNNLTLQNDYHGSDKFMVANDELIPITHTGSTSLS 313

Query: 70  -HHDNGSLKLQNVLCVPAITKNLVAPSSL 97
            HH   ++ L NVLCVP I K+L++ S L
Sbjct: 314 SHHHLRTVNLHNVLCVPNIKKSLISISKL 342

[Close]

BLAST of PI0005369 vs. ExPASy TrEMBL
Match: A0A6N2L1Z6 (gag_pre-integrs domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS128016 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.6e-11
Identity = 59/166 (35.54%), Postives = 81/166 (48.80%), Query Frame = 0


Query: 14  ETITDPNWYANSEASSHVTSDYNNLTNLTEYSGNELVIVEDENELAIIHVGSSTLHHDNG 73
           + + +P W+ +S A+SH+T+    L +  EY+GNE V+V +   L I H+GS +    + 
Sbjct: 248 QELNNPEWFPDSGATSHMTNTPEILDDSAEYTGNERVMVGNGQSLPISHIGSVSTVAPHC 307

Query: 74  SLKLQNVLCVPAITKNLVAPSSLL----------------------------HHHSLSPQ 133
           S+ L NVL VP I KNL++ S L                             HHH+L P+
Sbjct: 308 SIPLSNVLVVPGIQKNLISISQLTKQLNCRDRATGTVLGIGRCENGLYVLDQHHHALVPE 367

Query: 134 SPTCSSHPDASIILVEIPLTPPPIFHAPPLS--HPMVTRGKAGIFK 150
            P  SS   AS     +P   P   H P  S  HPM+TRGKAGI K
Sbjct: 368 -PVSSSTDAASPTESHVPAIMPS--HPPVTSNHHPMITRGKAGIVK 410

[Close]

BLAST of PI0005369 vs. NCBI nr
Match: XP_022151683.1 (uncharacterized protein LOC111019598 [Momordica charantia])

HSP 1 Score: 85.1 bits (209), Expect = 5.6e-13
Identity = 42/77 (54.55%), Postives = 58/77 (75.32%), Query Frame = 0


Query: 14  ETITDPNWYANSEASSHVTSDYNNLTNLTEYSGNELVIVEDENELAIIHVGSSTLHHDNG 73
           ET+ DP+WYA+S A+SHVT++ NN+    +YSG E VIV + N+L+I H+GS+ +H   G
Sbjct: 331 ETVIDPSWYADSGATSHVTANPNNVEQKVDYSGTENVIVANGNKLSISHIGSTNIHASGG 390

Query: 74  SLKLQNVLCVPAITKNL 91
           SLKL++VL VP I KNL
Sbjct: 391 SLKLKDVLRVPDIAKNL 407

[Close]

BLAST of PI0005369 vs. NCBI nr
Match: XP_016902197.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X1 [Cucumis melo])

HSP 1 Score: 84.0 bits (206), Expect = 1.3e-12
Identity = 45/91 (49.45%), Postives = 62/91 (68.13%), Query Frame = 0


Query: 6   NYQSFAHSETITDPNWYANSEASSHVTSDYNNLTNLTEYSGNELVIVEDENELAIIHVGS 65
           N   FA  +T+ DPNWY +S A++HVT + +N+TN TEYSG E V V + N L I +VG+
Sbjct: 312 NATPFATPDTVVDPNWYIDSGATNHVTRECSNMTNPTEYSGIEKVTVGNGNRLNISYVGN 371

Query: 66  STLHHDNGSLKLQNVLCVPAITKNLVAPSSL 97
           + L   + SL L+N+LCVP I KNL++ S L
Sbjct: 372 TCLTDGDKSLVLKNILCVPDIAKNLISVSKL 402

[Close]

BLAST of PI0005369 vs. NCBI nr
Match: XP_016901889.1 (PREDICTED: uncharacterized protein LOC107991455 [Cucumis melo])

HSP 1 Score: 84.0 bits (206), Expect = 1.3e-12
Identity = 50/99 (50.51%), Postives = 65/99 (65.66%), Query Frame = 0


Query: 4   QNNYQSFAHSETITDPNWYANSEASSHVTSDYNNLTNLTEYSGNELVIVEDENELAIIHV 63
           QNN   FA  E + D NWY +S A+++VT DY NL+N+TEYS  E   V + N+L I  V
Sbjct: 53  QNN-NPFAMQEIVVDSNWYVDSGATNYVTLDYLNLSNITEYSSIEHFSVGNGNKLQIHCV 112

Query: 64  GSSTLHHDNGSLKLQNVLCVPAITKNLVAPSSLLHHHSL 103
           G+  L   N SLKL+NVLCVP ITKNLV+ S L   +++
Sbjct: 113 GNFYLSDGNNSLKLENVLCVPNITKNLVSVSKLAQDNNV 150

[Close]

BLAST of PI0005369 vs. NCBI nr
Match: TYK05754.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-10
Identity = 40/93 (43.01%), Postives = 65/93 (69.89%), Query Frame = 0


Query: 10  FAHSETITDPNWYANSEASSHVTSDYNNLTNLTEYSGNELVIVEDENELAIIHVGSSTLH 69
           FA ++T+ + NWY +S A++H+T +Y+NL+N +EYSG E ++V + + L I ++G++ L 
Sbjct: 279 FATADTVINLNWYIDSGATNHLTVEYSNLSNPSEYSGIEKIMVGNGDSLHISYIGNAYLT 338

Query: 70  HDNGSLKLQNVLCVPAITKNLVAPSSLLHHHSL 103
                L L+NVLCVP ITKNLV+ S L   +++
Sbjct: 339 DGINGLNLKNVLCVPDITKNLVSVSKLAQDNNV 371

[Close]

BLAST of PI0005369 vs. NCBI nr
Match: KAA0057475.1 (uncharacterized protein E6C27_scaffold280G003560 [Cucumis melo var. makuwa] >TYK30171.1 uncharacterized protein E5676_scaffold216G001590 [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 1.5e-10
Identity = 41/82 (50.00%), Postives = 56/82 (68.29%), Query Frame = 0


Query: 9   SFAHSETITDPNWYANSEASSHVTSDYNNLTNLTEYSGNELVIVEDENELAIIHVGSSTL 68
           S A  ET+ D N Y +S A++HVTSD++NL N+ +YSGNE V+V +EN+L I  VG ++L
Sbjct: 252 SLATPETVVDTNRYVDSGATNHVTSDHSNLWNIDDYSGNENVVVGNENKLQISCVGYASL 311

Query: 69  HHDNGSLKLQNVLCVPAITKNL 91
                 L+L  +LCVP I KNL
Sbjct: 312 TDGKNCLRLDKILCVPEIKKNL 333

The following BLAST results are available for this feature:

BLAST of PI0005369 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	2.0e-08	39.29	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	3.3e-08	39.29	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]

BLAST of PI0005369 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DCW4	2.7e-13	54.55	uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A1S4E1U6	6.1e-13	49.45	uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4E0Z3	6.1e-13	50.51	uncharacterized protein LOC107991455 OS=Cucumis melo OX=3656 GN=LOC107991455 PE=...	[more]
A0A803NYU4	2.6e-11	44.94	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A6N2L1Z6	2.6e-11	35.54	gag_pre-integrs domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LO...	[more]

BLAST of PI0005369 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151683.1	5.6e-13	54.55	uncharacterized protein LOC111019598 [Momordica charantia]	[more]
XP_016902197.1	1.3e-12	49.45	PREDICTED: uncharacterized protein LOC107991581 isoform X1 [Cucumis melo]	[more]
XP_016901889.1	1.3e-12	50.51	PREDICTED: uncharacterized protein LOC107991455 [Cucumis melo]	[more]
TYK05754.1	1.2e-10	43.01	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0057475.1	1.5e-10	50.00	uncharacterized protein E6C27_scaffold280G003560 [Cucumis melo var. makuwa] >TYK...	[more]

BLAST of PI0005369 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0005369.1	PI0005369.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0005488	binding