PI0005276 (gene) Melon (PI 482460) v1

Overview


Name	PI0005276
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr03: 24394745 .. 24395128 (+)
RNA-Seq Expression	PI0005276
Synteny	PI0005276

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCAAGAAGACAAAGAAACTACGGAAAATGCAGTTTATGGTTCTATAGTTCTAAACCTAAGTGACAATGTCCTTAAGGAGGTCATTGATAAAGAAACAACTTATGGAATGTGGAAGAAGTTGGATGAACTTTATCAATCGAAAGACTTACCAAACCGTGCATACATGAGGGAAAGATTCTTTACCTTCAAGATGGACAACAACAAGTCATTGACAGAGAATCTTAGAGAATTCAAGAAGTTGTCAATTGATTTCAAGGACTTGAGAGACAAGATTGGTGATGAAAATGAATTATTCATTTTGCTAAAGTCACTTCCAGATGCATATAAAAAAGTCAAAAATGGCTCTCAAATATGGAAGAAAAAAAATCACCACCAATGA

mRNA sequence

ATGACTCAAGAAGACAAAGAAACTACGGAAAATGCAGTTTATGGTTCTATAGTTCTAAACCTAAGTGACAATGTCCTTAAGGAGGTCATTGATAAAGAAACAACTTATGGAATGTGGAAGAAGTTGGATGAACTTTATCAATCGAAAGACTTACCAAACCGTGCATACATGAGGGAAAGATTCTTTACCTTCAAGATGGACAACAACAAGTCATTGACAGAGAATCTTAGAGAATTCAAGAAGTTGTCAATTGATTTCAAGGACTTGAGAGACAAGATTGGTGATGAAAATGAATTATTCATTTTGCTAAAGTCACTTCCAGATGCATATAAAAAAGTCAAAAATGGCTCTCAAATATGGAAGAAAAAAAATCACCACCAATGA

Coding sequence (CDS)

ATGACTCAAGAAGACAAAGAAACTACGGAAAATGCAGTTTATGGTTCTATAGTTCTAAACCTAAGTGACAATGTCCTTAAGGAGGTCATTGATAAAGAAACAACTTATGGAATGTGGAAGAAGTTGGATGAACTTTATCAATCGAAAGACTTACCAAACCGTGCATACATGAGGGAAAGATTCTTTACCTTCAAGATGGACAACAACAAGTCATTGACAGAGAATCTTAGAGAATTCAAGAAGTTGTCAATTGATTTCAAGGACTTGAGAGACAAGATTGGTGATGAAAATGAATTATTCATTTTGCTAAAGTCACTTCCAGATGCATATAAAAAAGTCAAAAATGGCTCTCAAATATGGAAGAAAAAAAATCACCACCAATGA

Protein sequence

MTQEDKETTENAVYGSIVLNLSDNVLKEVIDKETTYGMWKKLDELYQSKDLPNRAYMRERFFTFKMDNNKSLTENLREFKKLSIDFKDLRDKIGDENELFILLKSLPDAYKKVKNGSQIWKKKNHHQ

Homology

[Close]

BLAST of PI0005276 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 9.2e-12
Identity = 36/110 (32.73%), Postives = 61/110 (55.45%), Query Frame = 0


Query: 1   MTQEDKETTENAVYGSIVLNLSDNVLKEVIDKETTYGMWKKLDELYQSKDLPNRAYMRER 60
           M  ED    +     +I L+LSD+V+  +ID++T  G+W +L+ LY SK L N+ Y++++
Sbjct: 47  MKAEDWADLDERAASAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQ 106

Query: 61  FFTFKMDNNKSLTENLREFKKLSIDFKDLRDKIGDENELFILLKSLPDAY 111
            +   M    +   +L  F  L     +L  KI +E++  +LL SLP +Y
Sbjct: 107 LYALHMSEGTNFLSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSY 156

[Close]

BLAST of PI0005276 vs. ExPASy TrEMBL
Match: A0A5D3BAU2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00010 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 3.5e-38
Identity = 81/98 (82.65%), Postives = 91/98 (92.86%), Query Frame = 0


Query: 1  MTQEDKETTENAVYGSIVLNLSDNVLKEVIDKETTYGMWKKLDELYQSKDLPNRAYMRER 60
          MTQE+KET EN  YG+IVLNLSDNVLKEVI +ETTYGMWKKL+ELYQSKDLPNRAYMRER
Sbjct: 1  MTQEEKETMENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRER 60

Query: 61 FFTFKMDNNKSLTENLREFKKLSIDFKDLRDKIGDENE 99
          F T+KMD+NKSL ENL EFKKLS+DF++L+DKIGDENE
Sbjct: 61 FLTYKMDDNKSLIENLGEFKKLSLDFRELKDKIGDENE 98

[Close]

BLAST of PI0005276 vs. ExPASy TrEMBL
Match: A0A5A7V6Z9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G00070 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 4.7e-35
Identity = 77/94 (81.91%), Postives = 86/94 (91.49%), Query Frame = 0


Query: 1  MTQEDKETTENAVYGSIVLNLSDNVLKEVIDKETTYGMWKKLDELYQSKDLPNRAYMRER 60
          MT E+KET ENA YG+IVLNLSDNVL+EVI ++TTYGMWKKL+ELYQSKDLPNRAY+RER
Sbjct: 1  MTHEEKETMENAPYGAIVLNLSDNVLREVISEQTTYGMWKKLEELYQSKDLPNRAYVRER 60

Query: 61 FFTFKMDNNKSLTENLREFKKLSIDFKDLRDKIG 95
          FFTFKMD NKSLTENL EFKKLS DF++L DKIG
Sbjct: 61 FFTFKMDGNKSLTENLGEFKKLSSDFRELGDKIG 94

[Close]

BLAST of PI0005276 vs. ExPASy TrEMBL
Match: A0A5D3DXZ1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00130 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 4.9e-32
Identity = 71/87 (81.61%), Postives = 81/87 (93.10%), Query Frame = 0


Query: 10 ENAVYGSIVLNLSDNVLKEVIDKETTYGMWKKLDELYQSKDLPNRAYMRERFFTFKMDNN 69
          ENAVYG+IVLNLSDNVL+EVI +ETTYGMWKKL+ELYQ KDLPNRA++RERFFTFKMD+N
Sbjct: 2  ENAVYGAIVLNLSDNVLREVIGEETTYGMWKKLEELYQHKDLPNRAFVRERFFTFKMDDN 61

Query: 70 KSLTENLREFKKLSIDFKDLRDKIGDE 97
          K + ENL EFKKLS +FK+LRDKIGDE
Sbjct: 62 KLVIENLEEFKKLSSEFKELRDKIGDE 88

[Close]

BLAST of PI0005276 vs. ExPASy TrEMBL
Match: A0A5A7V1L8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold896G00060 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 4.6e-30
Identity = 70/87 (80.46%), Postives = 76/87 (87.36%), Query Frame = 0


Query: 1  MTQEDKETTENAVYGSIVLNLSDNVLKEVIDKETTYGMWKKLDELYQSKDLPNRAYMRER 60
          MTQEDKET E A YG+IVLNLSDNV++EVID+E  YGMWKKLDELYQSKDL N AY+RER
Sbjct: 1  MTQEDKETMEKAAYGAIVLNLSDNVIREVIDEEIAYGMWKKLDELYQSKDLTNCAYVRER 60

Query: 61 FFTFKMDNNKSLTENLREFKKLSIDFK 88
          FFTFKMD+N SL ENL EFKKLS DFK
Sbjct: 61 FFTFKMDDNNSLIENLGEFKKLSSDFK 87

[Close]

BLAST of PI0005276 vs. ExPASy TrEMBL
Match: A0A5A7V269 (Putative gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G004590 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 5.1e-29
Identity = 67/113 (59.29%), Postives = 89/113 (78.76%), Query Frame = 0


Query: 1   MTQEDKETTENAVYGSIVLNLSDNVLKEVIDKETTYGMWKKLDELYQSKDLPNRAYMRER 60
           +T+E  E  E+A YG+IVL LSDNVL E+IDKETTY +W KL+E+Y ++DL NRAY+ E+
Sbjct: 36  VTKEQMEEMESAPYGTIVLYLSDNVLTEIIDKETTYEIWVKLEEMYLTRDLSNRAYLGEK 95

Query: 61  FFTFKMDNNKSLTENLREFKKLSIDFKDLRDKIGDENELFILLKSLPDAYKKV 114
           FFT+ MD+N+SLT+ L EFKKLS +F+ L D+I +ENE F LL SL D Y++V
Sbjct: 96  FFTYNMDSNESLTDTLSEFKKLSTEFQSLGDQIDEENETFFLLNSLSDEYREV 148

[Close]

BLAST of PI0005276 vs. NCBI nr
Match: TYJ96960.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 167.5 bits (423), Expect = 7.2e-38
Identity = 81/98 (82.65%), Postives = 91/98 (92.86%), Query Frame = 0


Query: 1  MTQEDKETTENAVYGSIVLNLSDNVLKEVIDKETTYGMWKKLDELYQSKDLPNRAYMRER 60
          MTQE+KET EN  YG+IVLNLSDNVLKEVI +ETTYGMWKKL+ELYQSKDLPNRAYMRER
Sbjct: 1  MTQEEKETMENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRER 60

Query: 61 FFTFKMDNNKSLTENLREFKKLSIDFKDLRDKIGDENE 99
          F T+KMD+NKSL ENL EFKKLS+DF++L+DKIGDENE
Sbjct: 61 FLTYKMDDNKSLIENLGEFKKLSLDFRELKDKIGDENE 98

[Close]

BLAST of PI0005276 vs. NCBI nr
Match: KAA0063883.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 157.1 bits (396), Expect = 9.8e-35
Identity = 77/94 (81.91%), Postives = 86/94 (91.49%), Query Frame = 0


Query: 1  MTQEDKETTENAVYGSIVLNLSDNVLKEVIDKETTYGMWKKLDELYQSKDLPNRAYMRER 60
          MT E+KET ENA YG+IVLNLSDNVL+EVI ++TTYGMWKKL+ELYQSKDLPNRAY+RER
Sbjct: 1  MTHEEKETMENAPYGAIVLNLSDNVLREVISEQTTYGMWKKLEELYQSKDLPNRAYVRER 60

Query: 61 FFTFKMDNNKSLTENLREFKKLSIDFKDLRDKIG 95
          FFTFKMD NKSLTENL EFKKLS DF++L DKIG
Sbjct: 61 FFTFKMDGNKSLTENLGEFKKLSSDFRELGDKIG 94

[Close]

BLAST of PI0005276 vs. NCBI nr
Match: TYK28110.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 147.1 bits (370), Expect = 1.0e-31
Identity = 71/87 (81.61%), Postives = 81/87 (93.10%), Query Frame = 0


Query: 10 ENAVYGSIVLNLSDNVLKEVIDKETTYGMWKKLDELYQSKDLPNRAYMRERFFTFKMDNN 69
          ENAVYG+IVLNLSDNVL+EVI +ETTYGMWKKL+ELYQ KDLPNRA++RERFFTFKMD+N
Sbjct: 2  ENAVYGAIVLNLSDNVLREVIGEETTYGMWKKLEELYQHKDLPNRAFVRERFFTFKMDDN 61

Query: 70 KSLTENLREFKKLSIDFKDLRDKIGDE 97
          K + ENL EFKKLS +FK+LRDKIGDE
Sbjct: 62 KLVIENLEEFKKLSSEFKELRDKIGDE 88

[Close]

BLAST of PI0005276 vs. NCBI nr
Match: XP_038885928.1 (uncharacterized protein LOC120076236 [Benincasa hispida])

HSP 1 Score: 141.0 bits (354), Expect = 7.2e-30
Identity = 64/119 (53.78%), Postives = 93/119 (78.15%), Query Frame = 0


Query: 5   DKETTENAVYGSIVLNLSDNVLKEVIDKETTYGMWKKLDELYQSKDLPNRAYMRERFFTF 64
           +KET E+  YG+IVLN+ D+VL++++D+ T Y +W KL+++Y +KDLPN+A++RERFFT+
Sbjct: 51  EKETIESNAYGTIVLNVIDSVLRQIVDRPTAYALWNKLNDIYLNKDLPNKAFLRERFFTY 110

Query: 65  KMDNNKSLTENLREFKKLSIDFKDLRDKIGDENELFILLKSLPDAYKKVKNGSQIWKKK 124
           KMD  KSLT+NL EFK LS DF+ + D IG+ENE FILL SLP+ +K VK   +  +++
Sbjct: 111 KMDPAKSLTDNLNEFKSLSSDFRSIGDNIGEENEAFILLNSLPETFKDVKTALKYGRER 169

[Close]

BLAST of PI0005276 vs. NCBI nr
Match: XP_038880370.1 (uncharacterized protein LOC120072018 [Benincasa hispida])

HSP 1 Score: 141.0 bits (354), Expect = 7.2e-30
Identity = 62/114 (54.39%), Postives = 93/114 (81.58%), Query Frame = 0


Query: 1   MTQEDKETTENAVYGSIVLNLSDNVLKEVIDKETTYGMWKKLDELYQSKDLPNRAYMRER 60
           +++ DKET E   YG+I+LN++D++L++++D+ T Y +W KL+E+Y +KDLPN+A+ RER
Sbjct: 47  LSEADKETIELNAYGTIILNVTDSILRQIVDQPTAYALWNKLNEIYLNKDLPNKAFFRER 106

Query: 61  FFTFKMDNNKSLTENLREFKKLSIDFKDLRDKIGDENELFILLKSLPDAYKKVK 115
           FFT+K+D  KSLT+NL EFK+LS +F+ +RD I +ENE FILL SLP+++K VK
Sbjct: 107 FFTYKIDAAKSLTDNLNEFKRLSSEFRSIRDNIREENEAFILLNSLPESFKDVK 160

The following BLAST results are available for this feature:

BLAST of PI0005276 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	9.2e-12	32.73	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of PI0005276 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BAU2	3.5e-38	82.65	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7V6Z9	4.7e-35	81.91	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DXZ1	4.9e-32	81.61	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7V1L8	4.6e-30	80.46	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7V269	5.1e-29	59.29	Putative gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G...	[more]

BLAST of PI0005276 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ96960.1	7.2e-38	82.65	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0063883.1	9.8e-35	81.91	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK28110.1	1.0e-31	81.61	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
XP_038885928.1	7.2e-30	53.78	uncharacterized protein LOC120076236 [Benincasa hispida]	[more]
XP_038880370.1	7.2e-30	54.39	uncharacterized protein LOC120072018 [Benincasa hispida]	[more]

BLAST of PI0005276 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 8..119 e-value: 1.3E-25 score: 89.8
None	No IPR available	PANTHER	PTHR34676:SF12	ZINC FINGER, CCHC-TYPE, RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN PROTEIN-RELATED	coord: 1..112
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 1..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0005276.1	PI0005276.1	mRNA