PI0005176 (gene) Melon (PI 482460) v1

Overview


Name	PI0005176
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Zinc finger BED domain-containing protein RICESLEEPER 3-like
Location	chr07: 11486412 .. 11487305 (+)
RNA-Seq Expression	PI0005176
Synteny	PI0005176

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGCAACATTACATCGTCATCCTTCCTTCATCAACAAGCAACATCGCTGGCCATCACTTACCTCCGTCCATTGTCGTCCACCACCGTCCGTCGCTTCCCTCCCTCCATCCACTTTCCTTGCTACATTTGGTACTTGGTAGGGTAAGTTCTTTTCTTTTTTCTTTTTCTTTCAAAATCAATTTTTTTTAACAAAATGGAAAAAGATCATATTTTAAACCATTATATTGTTTAAAGATTGAATTTTTTAAAATTTTGCCTTCAAAATTTGTTTATTTATATGGTTTGAGAACAAAAAAACTTAGAAAAATCTTGTTTAAAGATTAGATTTTTAAAATCATTGTATTATTTAAAGATTAAAATTTTAAAATCATTGTATTGTTTAAAGATTTGATATTTAAAATCATTATATTATTTAAAGATTAGATTTTTAAAAACACTTTGAAAATTTAATTTATATTGTAGGATGACTTGGAAGCATAAATGCATAATAACCAATTTTATTCTGTAGTGTAGGATACATTATGGAAGTGGAAAAGGAGAAAGTTGTAGATACAATGGAGGCTACTACACAAAAGGTTGATGAACATGAAGGAGGAGTTGAGAAACCAACAAAAAAACGCAACATGAAAAAATCCATAGTTTGGGACCATTTTGAGCATTTGAAAGGTGATCCTAATGACCCTTATGTTAGTTGTAAATATTTTGGAGCTACTTATGCATGTCATTCAAAGCATAATGGTACTGGAACGATGAAACATCACTTAAATAATTGTAATAAATATCCTTACCAAAGGCAGAGAGACCCGACACAAAAAGAAGAAGAAGGGGTTACGGGGGATTGTCCATCGAGTTCACAACTTGTGTGCGAGTCATTTAGTGTACAGAATTGA

mRNA sequence

ATGTCTGCAACATTACATCGTCATCCTTCCTTCATCAACAAGCAACATCGCTGGCCATCACTTACCTCCGTCCATTGTCGTCCACCACCGTCCGTCGCTTCCCTCCCTCCATCCACTTTCCTTGCTACATTTGGATACATTATGGAAGTGGAAAAGGAGAAAGTTGTAGATACAATGGAGGCTACTACACAAAAGGTTGATGAACATGAAGGAGGAGTTGAGAAACCAACAAAAAAACGCAACATGAAAAAATCCATAGTTTGGGACCATTTTGAGCATTTGAAAGGTGATCCTAATGACCCTTATGTTAGTTGTAAATATTTTGGAGCTACTTATGCATGTCATTCAAAGCATAATGGTACTGGAACGATGAAACATCACTTAAATAATTGTAATAAATATCCTTACCAAAGGCAGAGAGACCCGACACAAAAAGAAGAAGAAGGGGTTACGGGGGATTGTCCATCGAGTTCACAACTTGTGTGCGAGTCATTTAGTGTACAGAATTGA

Coding sequence (CDS)

ATGTCTGCAACATTACATCGTCATCCTTCCTTCATCAACAAGCAACATCGCTGGCCATCACTTACCTCCGTCCATTGTCGTCCACCACCGTCCGTCGCTTCCCTCCCTCCATCCACTTTCCTTGCTACATTTGGATACATTATGGAAGTGGAAAAGGAGAAAGTTGTAGATACAATGGAGGCTACTACACAAAAGGTTGATGAACATGAAGGAGGAGTTGAGAAACCAACAAAAAAACGCAACATGAAAAAATCCATAGTTTGGGACCATTTTGAGCATTTGAAAGGTGATCCTAATGACCCTTATGTTAGTTGTAAATATTTTGGAGCTACTTATGCATGTCATTCAAAGCATAATGGTACTGGAACGATGAAACATCACTTAAATAATTGTAATAAATATCCTTACCAAAGGCAGAGAGACCCGACACAAAAAGAAGAAGAAGGGGTTACGGGGGATTGTCCATCGAGTTCACAACTTGTGTGCGAGTCATTTAGTGTACAGAATTGA

Protein sequence

MSATLHRHPSFINKQHRWPSLTSVHCRPPPSVASLPPSTFLATFGYIMEVEKEKVVDTMEATTQKVDEHEGGVEKPTKKRNMKKSIVWDHFEHLKGDPNDPYVSCKYFGATYACHSKHNGTGTMKHHLNNCNKYPYQRQRDPTQKEEEGVTGDCPSSSQLVCESFSVQN

Homology

[Close]

BLAST of PI0005176 vs. ExPASy TrEMBL
Match: A0A5A7URG0 (Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold970G00400 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.3e-27
Identity = 62/97 (63.92%), Postives = 74/97 (76.29%), Query Frame = 0


Query: 76  PTKKRNMKKSIVWDHFEHLKGDPNDPYVSCKYFGATYACHSKHNGTGTMKHHLNNCNKYP 135
           P  ++N+K+S+VWDHFE LKGDPNDP   CKY G  YACHSKHNGTGTMKHHL NC KYP
Sbjct: 48  PKIRKNVKQSMVWDHFERLKGDPNDPRAKCKYCGVVYACHSKHNGTGTMKHHLENCKKYP 107

Query: 136 YQRQRDPTQK----EEEGVTGDCPSSSQLVCESFSVQ 169
           YQ++RD TQ     + +   GD  +SSQLVCESFS++
Sbjct: 108 YQKKRDQTQMTLAFKPKDKVGD--NSSQLVCESFSLE 142

[Close]

BLAST of PI0005176 vs. ExPASy TrEMBL
Match: A0A5D3CEC4 (Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G001000 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.8e-26
Identity = 61/96 (63.54%), Postives = 72/96 (75.00%), Query Frame = 0


Query: 76  PTKKRNMKKSIVWDHFEHLKGDPNDPYVSCKYFGATYACHSKHNGTGTMKHHLNNCNKYP 135
           P  ++N+K+S+VWDHFE LKGDPNDP   CKY G  YACHSK NGTGTMKHHL NC KYP
Sbjct: 48  PKIRKNVKQSMVWDHFERLKGDPNDPRAKCKYCGVVYACHSKRNGTGTMKHHLENCKKYP 107

Query: 136 YQRQRDPTQK----EEEGVTGDCPSSSQLVCESFSV 168
           YQ++RD TQ     + +   GD  +SSQLVCESFS+
Sbjct: 108 YQKKRDQTQMTLAFKPKDKVGD--NSSQLVCESFSL 141

[Close]

BLAST of PI0005176 vs. ExPASy TrEMBL
Match: A0A5D3CR68 (Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84G001050 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.8e-26
Identity = 61/96 (63.54%), Postives = 72/96 (75.00%), Query Frame = 0


Query: 76  PTKKRNMKKSIVWDHFEHLKGDPNDPYVSCKYFGATYACHSKHNGTGTMKHHLNNCNKYP 135
           P  ++N+K+S+VWDHFE LKGDPNDP   CKY G  YACHSK NGTGTMKHHL NC KYP
Sbjct: 48  PKIRKNVKQSMVWDHFERLKGDPNDPRAKCKYCGVVYACHSKRNGTGTMKHHLENCKKYP 107

Query: 136 YQRQRDPTQK----EEEGVTGDCPSSSQLVCESFSV 168
           YQ++RD TQ     + +   GD  +SSQLVCESFS+
Sbjct: 108 YQKKRDQTQMTLAFKPKDKVGD--NSSQLVCESFSL 141

[Close]

BLAST of PI0005176 vs. ExPASy TrEMBL
Match: A0A5A7THT5 (Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold125G001530 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.8e-26
Identity = 61/96 (63.54%), Postives = 72/96 (75.00%), Query Frame = 0


Query: 76  PTKKRNMKKSIVWDHFEHLKGDPNDPYVSCKYFGATYACHSKHNGTGTMKHHLNNCNKYP 135
           P  ++N+K+S+VWDHFE LKGDPNDP   CKY G  YACHSK NGTGTMKHHL NC KYP
Sbjct: 48  PKIRKNVKQSMVWDHFERLKGDPNDPRAKCKYCGVVYACHSKRNGTGTMKHHLENCKKYP 107

Query: 136 YQRQRDPTQK----EEEGVTGDCPSSSQLVCESFSV 168
           YQ++RD TQ     + +   GD  +SSQLVCESFS+
Sbjct: 108 YQKKRDQTQMTLAFKPKDKVGD--NSSQLVCESFSL 141

[Close]

BLAST of PI0005176 vs. ExPASy TrEMBL
Match: A0A5A7SVU3 (Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00760 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.8e-26
Identity = 61/96 (63.54%), Postives = 72/96 (75.00%), Query Frame = 0


Query: 76  PTKKRNMKKSIVWDHFEHLKGDPNDPYVSCKYFGATYACHSKHNGTGTMKHHLNNCNKYP 135
           P  ++N+K+S+VWDHFE LKGDPNDP   CKY G  YACHSK NGTGTMKHHL NC KYP
Sbjct: 48  PKIRKNVKQSMVWDHFERLKGDPNDPRAKCKYCGVVYACHSKRNGTGTMKHHLENCKKYP 107

Query: 136 YQRQRDPTQK----EEEGVTGDCPSSSQLVCESFSV 168
           YQ++RD TQ     + +   GD  +SSQLVCESFS+
Sbjct: 108 YQKKRDQTQMTLAFKPKDKVGD--NSSQLVCESFSL 141

[Close]

BLAST of PI0005176 vs. NCBI nr
Match: KAA0057700.1 (zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. makuwa] >TYK27486.1 zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 132.9 bits (333), Expect = 2.6e-27
Identity = 62/97 (63.92%), Postives = 74/97 (76.29%), Query Frame = 0


Query: 76  PTKKRNMKKSIVWDHFEHLKGDPNDPYVSCKYFGATYACHSKHNGTGTMKHHLNNCNKYP 135
           P  ++N+K+S+VWDHFE LKGDPNDP   CKY G  YACHSKHNGTGTMKHHL NC KYP
Sbjct: 48  PKIRKNVKQSMVWDHFERLKGDPNDPRAKCKYCGVVYACHSKHNGTGTMKHHLENCKKYP 107

Query: 136 YQRQRDPTQK----EEEGVTGDCPSSSQLVCESFSVQ 169
           YQ++RD TQ     + +   GD  +SSQLVCESFS++
Sbjct: 108 YQKKRDQTQMTLAFKPKDKVGD--NSSQLVCESFSLE 142

[Close]

BLAST of PI0005176 vs. NCBI nr
Match: KAA0033275.1 (zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 129.0 bits (323), Expect = 3.8e-26
Identity = 61/96 (63.54%), Postives = 72/96 (75.00%), Query Frame = 0


Query: 76  PTKKRNMKKSIVWDHFEHLKGDPNDPYVSCKYFGATYACHSKHNGTGTMKHHLNNCNKYP 135
           P  ++N+K+S+VWDHFE LKGDPNDP   CKY G  YACHSK NGTGTMKHHL NC KYP
Sbjct: 48  PKIRKNVKQSMVWDHFERLKGDPNDPRAKCKYCGVVYACHSKRNGTGTMKHHLENCKKYP 107

Query: 136 YQRQRDPTQK----EEEGVTGDCPSSSQLVCESFSV 168
           YQ++RD TQ     + +   GD  +SSQLVCESFS+
Sbjct: 108 YQKKRDQTQMTLAFKPKDKVGD--NSSQLVCESFSL 141

[Close]

BLAST of PI0005176 vs. NCBI nr
Match: KAA0040955.1 (zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 129.0 bits (323), Expect = 3.8e-26
Identity = 61/96 (63.54%), Postives = 72/96 (75.00%), Query Frame = 0


Query: 76  PTKKRNMKKSIVWDHFEHLKGDPNDPYVSCKYFGATYACHSKHNGTGTMKHHLNNCNKYP 135
           P  ++N+K+S+VWDHFE LKGDPNDP   CKY G  YACHSK NGTGTMKHHL NC KYP
Sbjct: 48  PKIRKNVKQSMVWDHFERLKGDPNDPRAKCKYCGVVYACHSKRNGTGTMKHHLENCKKYP 107

Query: 136 YQRQRDPTQK----EEEGVTGDCPSSSQLVCESFSV 168
           YQ++RD TQ     + +   GD  +SSQLVCESFS+
Sbjct: 108 YQKKRDQTQMTLAFKPKDKVGD--NSSQLVCESFSL 141

[Close]

BLAST of PI0005176 vs. NCBI nr
Match: TYK14363.1 (zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 129.0 bits (323), Expect = 3.8e-26
Identity = 61/96 (63.54%), Postives = 72/96 (75.00%), Query Frame = 0


Query: 76  PTKKRNMKKSIVWDHFEHLKGDPNDPYVSCKYFGATYACHSKHNGTGTMKHHLNNCNKYP 135
           P  ++N+K+S+VWDHFE LKGDPNDP   CKY G  YACHSK NGTGTMKHHL NC KYP
Sbjct: 48  PKIRKNVKQSMVWDHFERLKGDPNDPRAKCKYCGVVYACHSKRNGTGTMKHHLENCKKYP 107

Query: 136 YQRQRDPTQK----EEEGVTGDCPSSSQLVCESFSV 168
           YQ++RD TQ     + +   GD  +SSQLVCESFS+
Sbjct: 108 YQKKRDQTQMTLAFKPKDKVGD--NSSQLVCESFSL 141

[Close]

BLAST of PI0005176 vs. NCBI nr
Match: TYK09690.1 (zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 129.0 bits (323), Expect = 3.8e-26
Identity = 61/96 (63.54%), Postives = 72/96 (75.00%), Query Frame = 0


Query: 76  PTKKRNMKKSIVWDHFEHLKGDPNDPYVSCKYFGATYACHSKHNGTGTMKHHLNNCNKYP 135
           P  ++N+K+S+VWDHFE LKGDPNDP   CKY G  YACHSK NGTGTMKHHL NC KYP
Sbjct: 48  PKIRKNVKQSMVWDHFERLKGDPNDPRAKCKYCGVVYACHSKRNGTGTMKHHLENCKKYP 107

Query: 136 YQRQRDPTQK----EEEGVTGDCPSSSQLVCESFSV 168
           YQ++RD TQ     + +   GD  +SSQLVCESFS+
Sbjct: 108 YQKKRDQTQMTLAFKPKDKVGD--NSSQLVCESFSL 141

The following BLAST results are available for this feature:

BLAST of PI0005176 vs.


Match Name	E-value	Identity	Description

BLAST of PI0005176 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7URG0	1.3e-27	63.92	Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var...	[more]
A0A5D3CEC4	1.8e-26	63.54	Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var...	[more]
A0A5D3CR68	1.8e-26	63.54	Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var...	[more]
A0A5A7THT5	1.8e-26	63.54	Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var...	[more]
A0A5A7SVU3	1.8e-26	63.54	Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var...	[more]

BLAST of PI0005176 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0057700.1	2.6e-27	63.92	zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. ...	[more]
KAA0033275.1	3.8e-26	63.54	zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. ...	[more]
KAA0040955.1	3.8e-26	63.54	zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. ...	[more]
TYK14363.1	3.8e-26	63.54	zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. ...	[more]
TYK09690.1	3.8e-26	63.54	zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. ...	[more]

BLAST of PI0005176 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SMART	SM00614	bed5	coord: 82..134 e-value: 3.8E-9 score: 46.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 135..157
None	No IPR available	PANTHER	PTHR34396	OS03G0264950 PROTEIN-RELATED	coord: 67..146
None	No IPR available	PANTHER	PTHR34396:SF1	OS03G0264950 PROTEIN	coord: 67..146
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 85..140

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0005176.1	PI0005176.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0043167	ion binding
molecular_function	GO:0097159	organic cyclic compound binding