PI0005157 (gene) Melon (PI 482460) v1

Overview


Name	PI0005157
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Reverse transcriptase domain-containing protein
Location	chr03: 17376757 .. 17377515 (-)
RNA-Seq Expression	PI0005157
Synteny	PI0005157

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGCAACGAAACAGATGGGCAAGTCCCATGTAGACCGATCGGTAGAGATTGAAGAGCAGATGCTCAACCTAGTGGAAGTTTCGGACGCTGTTCGCTTCTTGGAAACCCGTATTCAAGAAATTTCCAAGAAAGTCGACGCTATTGATGCGGTAACCGGTCGCCTCGATGGATTACCTATAAGTGAGCTATTGACAAGAGTTGACACTCTAGAGGCAAAAGCTGTAAGAACTGGTAACTACGAGCGTGGGGACAGTTCAATGGGCTTTGTTGCCTACATAGAAGAATGGGTTAGCGAGCTAGATAGCTCTCAAAAGTCGATTGTGGAGATGATAAATGGCATGTCAGAGGATTTTCGTGCCACTCACGACGCCGTCAGGAATAAGATTGCAGACGTGAGCACGAGGGTGAATCTCAAGATGCGAGCCATGGCAAACCAAGCTCCAGCTGGAGGAGCAATGCAAGTTAACAGAGTGAAGATCCCTGAACCCAAACCCTTTTGTAGGGCAAGGGATGCAAAAGCCTTGGAAAACTACATCTTTGATCTCGAACAATACTTCCGGGCCACGAACACAATTACAGAAGAAGCGAAAGTGACACTAGCAACGATGCATCTAGTTGAGGATGCAAAGTTGTGGTGGAGGTCCCGGTATGTCAAGATCCAAGAAGGACGGTGTACGATAGACACTTGGAACAGTTTGAAGAAAGAACTACTCTCACAGTTCTTCCTCGAGAACGTTGAAATCCTTGCTCGATGA

mRNA sequence

ATGTCTGCAACGAAACAGATGGGCAAGTCCCATGTAGACCGATCGGTAGAGATTGAAGAGCAGATGCTCAACCTAGTGGAAGTTTCGGACGCTGTTCGCTTCTTGGAAACCCGTATTCAAGAAATTTCCAAGAAAGTCGACGCTATTGATGCGGTAACCGGTCGCCTCGATGGATTACCTATAAGTGAGCTATTGACAAGAGTTGACACTCTAGAGGCAAAAGCTGTAAGAACTGGTAACTACGAGCGTGGGGACAGTTCAATGGGCTTTGTTGCCTACATAGAAGAATGGGTTAGCGAGCTAGATAGCTCTCAAAAGTCGATTGTGGAGATGATAAATGGCATGTCAGAGGATTTTCGTGCCACTCACGACGCCGTCAGGAATAAGATTGCAGACGTGAGCACGAGGGTGAATCTCAAGATGCGAGCCATGGCAAACCAAGCTCCAGCTGGAGGAGCAATGCAAGTTAACAGAGTGAAGATCCCTGAACCCAAACCCTTTTGTAGGGCAAGGGATGCAAAAGCCTTGGAAAACTACATCTTTGATCTCGAACAATACTTCCGGGCCACGAACACAATTACAGAAGAAGCGAAAGTGACACTAGCAACGATGCATCTAGTTGAGGATGCAAAGTTGTGGTGGAGGTCCCGGTATGTCAAGATCCAAGAAGGACGGTGTACGATAGACACTTGGAACAGTTTGAAGAAAGAACTACTCTCACAGTTCTTCCTCGAGAACGTTGAAATCCTTGCTCGATGA

Coding sequence (CDS)

ATGTCTGCAACGAAACAGATGGGCAAGTCCCATGTAGACCGATCGGTAGAGATTGAAGAGCAGATGCTCAACCTAGTGGAAGTTTCGGACGCTGTTCGCTTCTTGGAAACCCGTATTCAAGAAATTTCCAAGAAAGTCGACGCTATTGATGCGGTAACCGGTCGCCTCGATGGATTACCTATAAGTGAGCTATTGACAAGAGTTGACACTCTAGAGGCAAAAGCTGTAAGAACTGGTAACTACGAGCGTGGGGACAGTTCAATGGGCTTTGTTGCCTACATAGAAGAATGGGTTAGCGAGCTAGATAGCTCTCAAAAGTCGATTGTGGAGATGATAAATGGCATGTCAGAGGATTTTCGTGCCACTCACGACGCCGTCAGGAATAAGATTGCAGACGTGAGCACGAGGGTGAATCTCAAGATGCGAGCCATGGCAAACCAAGCTCCAGCTGGAGGAGCAATGCAAGTTAACAGAGTGAAGATCCCTGAACCCAAACCCTTTTGTAGGGCAAGGGATGCAAAAGCCTTGGAAAACTACATCTTTGATCTCGAACAATACTTCCGGGCCACGAACACAATTACAGAAGAAGCGAAAGTGACACTAGCAACGATGCATCTAGTTGAGGATGCAAAGTTGTGGTGGAGGTCCCGGTATGTCAAGATCCAAGAAGGACGGTGTACGATAGACACTTGGAACAGTTTGAAGAAAGAACTACTCTCACAGTTCTTCCTCGAGAACGTTGAAATCCTTGCTCGATGA

Protein sequence

MSATKQMGKSHVDRSVEIEEQMLNLVEVSDAVRFLETRIQEISKKVDAIDAVTGRLDGLPISELLTRVDTLEAKAVRTGNYERGDSSMGFVAYIEEWVSELDSSQKSIVEMINGMSEDFRATHDAVRNKIADVSTRVNLKMRAMANQAPAGGAMQVNRVKIPEPKPFCRARDAKALENYIFDLEQYFRATNTITEEAKVTLATMHLVEDAKLWWRSRYVKIQEGRCTIDTWNSLKKELLSQFFLENVEILAR

Homology

[Close]

BLAST of PI0005157 vs. ExPASy TrEMBL
Match: A0A5D3BYE6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00260 PE=4 SV=1)

HSP 1 Score: 370.5 bits (950), Expect = 5.4e-99
Identity = 189/254 (74.41%), Postives = 220/254 (86.61%), Query Frame = 0


Query: 1   MSATKQMGKSHVDRSVEIEEQMLNLVEVSDAVRFLETRIQEISKKVDAIDAVTGRLDGLP 60
           MS++  +GK+  DR VE+EEQML LVEV D++R+LE+R++EIS+K + IDAV GR++G P
Sbjct: 1   MSSSNPLGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFP 60

Query: 61  ISELLTRVDTLE--AKAVRTGNYERGDSSMGFVAYIEEWVSELDSSQKSIVEMINGMSED 120
           I EL+TRVD LE      RT NYERGDSS G VA+IEE V ELDSSQK+++EMINGMSED
Sbjct: 61  IQELMTRVDALETTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSED 120

Query: 121 FRATHDAVRNKIADVSTRVNLKMRAMANQAPAGGAMQVNRVKIPEPKPFCRARDAKALEN 180
           FRAT D VRN+IADV+ R++L MRAMANQAPAGGA+ V+RVKIPEPKPFC ARDAKALEN
Sbjct: 121 FRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKALEN 180

Query: 181 YIFDLEQYFRATNTITEEAKVTLATMHLVEDAKLWWRSRYVKIQEGRCTIDTWNSLKKEL 240
           YIFDLEQYFRATNT+TEEAKVTLATMHL EDAKLWWRSR+V IQEGRCTIDTW++LK+EL
Sbjct: 181 YIFDLEQYFRATNTVTEEAKVTLATMHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKREL 240

Query: 241 LSQFFLENVEILAR 253
            SQFF ENVEILAR
Sbjct: 241 RSQFFPENVEILAR 254

[Close]

BLAST of PI0005157 vs. ExPASy TrEMBL
Match: A0A5D3C4R1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001990 PE=4 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 1.2e-98
Identity = 189/254 (74.41%), Postives = 219/254 (86.22%), Query Frame = 0


Query: 1   MSATKQMGKSHVDRSVEIEEQMLNLVEVSDAVRFLETRIQEISKKVDAIDAVTGRLDGLP 60
           MS++   GK+  DR VE+EEQML LVEV D++R+LE+R++EIS+K + IDAV GR++G P
Sbjct: 1   MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFP 60

Query: 61  ISELLTRVDTLE--AKAVRTGNYERGDSSMGFVAYIEEWVSELDSSQKSIVEMINGMSED 120
           I EL+TRVD LE      RT NYERGDSS G VA+IEE V ELDSSQK+++EMINGMSED
Sbjct: 61  IQELMTRVDALETTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSED 120

Query: 121 FRATHDAVRNKIADVSTRVNLKMRAMANQAPAGGAMQVNRVKIPEPKPFCRARDAKALEN 180
           FRAT D VRN+IADV+ R++L MRAMANQAPAGGA+ V+RVKIPEPKPFC ARDAKALEN
Sbjct: 121 FRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKALEN 180

Query: 181 YIFDLEQYFRATNTITEEAKVTLATMHLVEDAKLWWRSRYVKIQEGRCTIDTWNSLKKEL 240
           YIFDLEQYFRATNT+TEEAKVTLATMHL EDAKLWWRSR+V IQEGRCTIDTW++LK+EL
Sbjct: 181 YIFDLEQYFRATNTVTEEAKVTLATMHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKREL 240

Query: 241 LSQFFLENVEILAR 253
            SQFF ENVEILAR
Sbjct: 241 RSQFFPENVEILAR 254

[Close]

BLAST of PI0005157 vs. ExPASy TrEMBL
Match: A0A5D3BRZ6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00060 PE=4 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 1.2e-98
Identity = 189/254 (74.41%), Postives = 219/254 (86.22%), Query Frame = 0


Query: 1   MSATKQMGKSHVDRSVEIEEQMLNLVEVSDAVRFLETRIQEISKKVDAIDAVTGRLDGLP 60
           MS++   GK+  DR VE+EEQML LVEV D++R+LE+R++EIS+K + IDAV GR++G P
Sbjct: 1   MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFP 60

Query: 61  ISELLTRVDTLE--AKAVRTGNYERGDSSMGFVAYIEEWVSELDSSQKSIVEMINGMSED 120
           I EL+TRVD LE      RT NYERGDSS G VA+IEE V ELDSSQK+++EMINGMSED
Sbjct: 61  IQELMTRVDALETTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSED 120

Query: 121 FRATHDAVRNKIADVSTRVNLKMRAMANQAPAGGAMQVNRVKIPEPKPFCRARDAKALEN 180
           FRAT D VRN+IADV+ R++L MRAMANQAPAGGA+ V+RVKIPEPKPFC ARDAKALEN
Sbjct: 121 FRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKALEN 180

Query: 181 YIFDLEQYFRATNTITEEAKVTLATMHLVEDAKLWWRSRYVKIQEGRCTIDTWNSLKKEL 240
           YIFDLEQYFRATNT+TEEAKVTLATMHL EDAKLWWRSR+V IQEGRCTIDTW++LK+EL
Sbjct: 181 YIFDLEQYFRATNTVTEEAKVTLATMHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKREL 240

Query: 241 LSQFFLENVEILAR 253
            SQFF ENVEILAR
Sbjct: 241 RSQFFPENVEILAR 254

[Close]

BLAST of PI0005157 vs. ExPASy TrEMBL
Match: A0A5D3DQ20 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G007440 PE=4 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 1.2e-98
Identity = 189/254 (74.41%), Postives = 219/254 (86.22%), Query Frame = 0


Query: 1   MSATKQMGKSHVDRSVEIEEQMLNLVEVSDAVRFLETRIQEISKKVDAIDAVTGRLDGLP 60
           MS++   GK+  DR VE+EEQML LVEV D++R+LE+R++EIS+K + IDAV GR++G P
Sbjct: 1   MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFP 60

Query: 61  ISELLTRVDTLE--AKAVRTGNYERGDSSMGFVAYIEEWVSELDSSQKSIVEMINGMSED 120
           I EL+TRVD LE      RT NYERGDSS G VA+IEE V ELDSSQK+++EMINGMSED
Sbjct: 61  IQELMTRVDALETTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSED 120

Query: 121 FRATHDAVRNKIADVSTRVNLKMRAMANQAPAGGAMQVNRVKIPEPKPFCRARDAKALEN 180
           FRAT D VRN+IADV+ R++L MRAMANQAPAGGA+ V+RVKIPEPKPFC ARDAKALEN
Sbjct: 121 FRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKALEN 180

Query: 181 YIFDLEQYFRATNTITEEAKVTLATMHLVEDAKLWWRSRYVKIQEGRCTIDTWNSLKKEL 240
           YIFDLEQYFRATNT+TEEAKVTLATMHL EDAKLWWRSR+V IQEGRCTIDTW++LK+EL
Sbjct: 181 YIFDLEQYFRATNTVTEEAKVTLATMHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKREL 240

Query: 241 LSQFFLENVEILAR 253
            SQFF ENVEILAR
Sbjct: 241 RSQFFPENVEILAR 254

[Close]

BLAST of PI0005157 vs. ExPASy TrEMBL
Match: A0A5A7T0E2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001310 PE=4 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 1.2e-98
Identity = 189/254 (74.41%), Postives = 219/254 (86.22%), Query Frame = 0


Query: 1   MSATKQMGKSHVDRSVEIEEQMLNLVEVSDAVRFLETRIQEISKKVDAIDAVTGRLDGLP 60
           MS++   GK+  DR VE+EEQML LVEV D++R+LE+R++EIS+K + IDAV GR++G P
Sbjct: 1   MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFP 60

Query: 61  ISELLTRVDTLE--AKAVRTGNYERGDSSMGFVAYIEEWVSELDSSQKSIVEMINGMSED 120
           I EL+TRVD LE      RT NYERGDSS G VA+IEE V ELDSSQK+++EMINGMSED
Sbjct: 61  IQELMTRVDALETTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSED 120

Query: 121 FRATHDAVRNKIADVSTRVNLKMRAMANQAPAGGAMQVNRVKIPEPKPFCRARDAKALEN 180
           FRAT D VRN+IADV+ R++L MRAMANQAPAGGA+ V+RVKIPEPKPFC ARDAKALEN
Sbjct: 121 FRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKALEN 180

Query: 181 YIFDLEQYFRATNTITEEAKVTLATMHLVEDAKLWWRSRYVKIQEGRCTIDTWNSLKKEL 240
           YIFDLEQYFRATNT+TEEAKVTLATMHL EDAKLWWRSR+V IQEGRCTIDTW++LK+EL
Sbjct: 181 YIFDLEQYFRATNTVTEEAKVTLATMHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKREL 240

Query: 241 LSQFFLENVEILAR 253
            SQFF ENVEILAR
Sbjct: 241 RSQFFPENVEILAR 254

[Close]

BLAST of PI0005157 vs. NCBI nr
Match: TYK03099.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 370.5 bits (950), Expect = 1.1e-98
Identity = 189/254 (74.41%), Postives = 220/254 (86.61%), Query Frame = 0


Query: 1   MSATKQMGKSHVDRSVEIEEQMLNLVEVSDAVRFLETRIQEISKKVDAIDAVTGRLDGLP 60
           MS++  +GK+  DR VE+EEQML LVEV D++R+LE+R++EIS+K + IDAV GR++G P
Sbjct: 1   MSSSNPLGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFP 60

Query: 61  ISELLTRVDTLE--AKAVRTGNYERGDSSMGFVAYIEEWVSELDSSQKSIVEMINGMSED 120
           I EL+TRVD LE      RT NYERGDSS G VA+IEE V ELDSSQK+++EMINGMSED
Sbjct: 61  IQELMTRVDALETTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSED 120

Query: 121 FRATHDAVRNKIADVSTRVNLKMRAMANQAPAGGAMQVNRVKIPEPKPFCRARDAKALEN 180
           FRAT D VRN+IADV+ R++L MRAMANQAPAGGA+ V+RVKIPEPKPFC ARDAKALEN
Sbjct: 121 FRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKALEN 180

Query: 181 YIFDLEQYFRATNTITEEAKVTLATMHLVEDAKLWWRSRYVKIQEGRCTIDTWNSLKKEL 240
           YIFDLEQYFRATNT+TEEAKVTLATMHL EDAKLWWRSR+V IQEGRCTIDTW++LK+EL
Sbjct: 181 YIFDLEQYFRATNTVTEEAKVTLATMHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKREL 240

Query: 241 LSQFFLENVEILAR 253
            SQFF ENVEILAR
Sbjct: 241 RSQFFPENVEILAR 254

[Close]

BLAST of PI0005157 vs. NCBI nr
Match: KAA0037220.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcriptase [Cucumis melo var. makuwa] >TYJ99001.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK01698.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK02882.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 369.4 bits (947), Expect = 2.5e-98
Identity = 189/254 (74.41%), Postives = 219/254 (86.22%), Query Frame = 0


Query: 1   MSATKQMGKSHVDRSVEIEEQMLNLVEVSDAVRFLETRIQEISKKVDAIDAVTGRLDGLP 60
           MS++   GK+  DR VE+EEQML LVEV D++R+LE+R++EIS+K + IDAV GR++G P
Sbjct: 1   MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFP 60

Query: 61  ISELLTRVDTLE--AKAVRTGNYERGDSSMGFVAYIEEWVSELDSSQKSIVEMINGMSED 120
           I EL+TRVD LE      RT NYERGDSS G VA+IEE V ELDSSQK+++EMINGMSED
Sbjct: 61  IQELMTRVDALETTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSED 120

Query: 121 FRATHDAVRNKIADVSTRVNLKMRAMANQAPAGGAMQVNRVKIPEPKPFCRARDAKALEN 180
           FRAT D VRN+IADV+ R++L MRAMANQAPAGGA+ V+RVKIPEPKPFC ARDAKALEN
Sbjct: 121 FRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKALEN 180

Query: 181 YIFDLEQYFRATNTITEEAKVTLATMHLVEDAKLWWRSRYVKIQEGRCTIDTWNSLKKEL 240
           YIFDLEQYFRATNT+TEEAKVTLATMHL EDAKLWWRSR+V IQEGRCTIDTW++LK+EL
Sbjct: 181 YIFDLEQYFRATNTVTEEAKVTLATMHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKREL 240

Query: 241 LSQFFLENVEILAR 253
            SQFF ENVEILAR
Sbjct: 241 RSQFFPENVEILAR 254

[Close]

BLAST of PI0005157 vs. NCBI nr
Match: KAA0063412.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 369.4 bits (947), Expect = 2.5e-98
Identity = 189/254 (74.41%), Postives = 219/254 (86.22%), Query Frame = 0


Query: 1   MSATKQMGKSHVDRSVEIEEQMLNLVEVSDAVRFLETRIQEISKKVDAIDAVTGRLDGLP 60
           MS++   GK+  DR VE+EEQML LVEV D++R+LE+R++EIS+K + IDAV GR++G P
Sbjct: 1   MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFP 60

Query: 61  ISELLTRVDTLE--AKAVRTGNYERGDSSMGFVAYIEEWVSELDSSQKSIVEMINGMSED 120
           I EL+TRVD LE      RT NYERGDSS G VA+IEE V ELDSSQK+++EMINGMSED
Sbjct: 61  IQELMTRVDALETTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSED 120

Query: 121 FRATHDAVRNKIADVSTRVNLKMRAMANQAPAGGAMQVNRVKIPEPKPFCRARDAKALEN 180
           FRAT D VRN+IADV+ R++L MRAMANQAPAGGA+ V+RVKIPEPKPFC ARDAKALEN
Sbjct: 121 FRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKALEN 180

Query: 181 YIFDLEQYFRATNTITEEAKVTLATMHLVEDAKLWWRSRYVKIQEGRCTIDTWNSLKKEL 240
           YIFDLEQYFRATNT+TEEAKVTLATMHL EDAKLWWRSR+V IQEGRCTIDTW++LK+EL
Sbjct: 181 YIFDLEQYFRATNTVTEEAKVTLATMHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKREL 240

Query: 241 LSQFFLENVEILAR 253
            SQFF ENVEILAR
Sbjct: 241 RSQFFPENVEILAR 254

[Close]

BLAST of PI0005157 vs. NCBI nr
Match: TYK28713.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 369.4 bits (947), Expect = 2.5e-98
Identity = 189/254 (74.41%), Postives = 219/254 (86.22%), Query Frame = 0


Query: 1   MSATKQMGKSHVDRSVEIEEQMLNLVEVSDAVRFLETRIQEISKKVDAIDAVTGRLDGLP 60
           MS++   GK+  DR VE+EEQML LVEV D++R+LE+R++EIS+K + IDAV GR++G P
Sbjct: 1   MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFP 60

Query: 61  ISELLTRVDTLEA--KAVRTGNYERGDSSMGFVAYIEEWVSELDSSQKSIVEMINGMSED 120
           I EL+TRVD LE      RT NYERGDSS G VA+IEE V ELDSSQK+++EMINGMSED
Sbjct: 61  IQELMTRVDALETTINIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSED 120

Query: 121 FRATHDAVRNKIADVSTRVNLKMRAMANQAPAGGAMQVNRVKIPEPKPFCRARDAKALEN 180
           FRAT D VRN+IADV+ R++L MRAMANQAPAGGA+ V+RVKIPEPKPFC ARDAKALEN
Sbjct: 121 FRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKALEN 180

Query: 181 YIFDLEQYFRATNTITEEAKVTLATMHLVEDAKLWWRSRYVKIQEGRCTIDTWNSLKKEL 240
           YIFDLEQYFRATNT+TEEAKVTLATMHL EDAKLWWRSR+V IQEGRCTIDTW++LK+EL
Sbjct: 181 YIFDLEQYFRATNTVTEEAKVTLATMHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKREL 240

Query: 241 LSQFFLENVEILAR 253
            SQFF ENVEILAR
Sbjct: 241 RSQFFPENVEILAR 254

[Close]

BLAST of PI0005157 vs. NCBI nr
Match: TYK02231.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 369.4 bits (947), Expect = 2.5e-98
Identity = 189/254 (74.41%), Postives = 219/254 (86.22%), Query Frame = 0


Query: 1   MSATKQMGKSHVDRSVEIEEQMLNLVEVSDAVRFLETRIQEISKKVDAIDAVTGRLDGLP 60
           MS++   GK+  DR VE+EEQML LVEV D++R+LE+R++EIS+K + IDAV GR++G P
Sbjct: 1   MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFP 60

Query: 61  ISELLTRVDTLE--AKAVRTGNYERGDSSMGFVAYIEEWVSELDSSQKSIVEMINGMSED 120
           I EL+TRVD LE      RT NYERGDSS G VA+IEE V ELDSSQK+++EMINGMSED
Sbjct: 61  IQELMTRVDALETTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSED 120

Query: 121 FRATHDAVRNKIADVSTRVNLKMRAMANQAPAGGAMQVNRVKIPEPKPFCRARDAKALEN 180
           FRAT D VRN+IADV+ R++L MRAMANQAPAGGA+ V+RVKIPEPKPFC ARDAKALEN
Sbjct: 121 FRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKALEN 180

Query: 181 YIFDLEQYFRATNTITEEAKVTLATMHLVEDAKLWWRSRYVKIQEGRCTIDTWNSLKKEL 240
           YIFDLEQYFRATNT+TEEAKVTLATMHL EDAKLWWRSR+V IQEGRCTIDTW++LK+EL
Sbjct: 181 YIFDLEQYFRATNTVTEEAKVTLATMHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKREL 240

Query: 241 LSQFFLENVEILAR 253
            SQFF ENVEILAR
Sbjct: 241 RSQFFPENVEILAR 254

The following BLAST results are available for this feature:

BLAST of PI0005157 vs.


Match Name	E-value	Identity	Description

BLAST of PI0005157 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BYE6	5.4e-99	74.41	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37...	[more]
A0A5D3C4R1	1.2e-98	74.41	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5D3BRZ6	1.2e-98	74.41	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5D3DQ20	1.2e-98	74.41	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7T0E2	1.2e-98	74.41	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20...	[more]

BLAST of PI0005157 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK03099.1	1.1e-98	74.41	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0037220.1	2.5e-98	74.41	reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcripta...	[more]
KAA0063412.1	2.5e-98	74.41	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK28713.1	2.5e-98	74.41	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK02231.1	2.5e-98	74.41	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of PI0005157 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 25..45

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0005157.1	PI0005157.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding