PI0005101 (gene) Melon (PI 482460) v1

Overview
NamePI0005101
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionTransposase
Locationchr11: 22786119 .. 22786918 (-)
RNA-Seq ExpressionPI0005101
SyntenyPI0005101
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAAATTGTACTTTTTGTCAAACTTTTTGCTAGGCAAACAAGTAACGACAGGGTAGATGTAGATCATATTAACCTATTGGATGATGAGGAACAATTTGATAACTATCTTTGGGATAGAATAGCATACCACATTCCCGTAGATTCAATAAAAAAAGCCATAAAAACTTCATCTGCCCTAGTTGTCGGGATCATAGGTTTTCTATATGTTCTGCTAGTTTAGACTTATGAGTGCATCTAGTTGTTAACGAGACATCATATTTTTACACTAAAAAGATAAGGGACAAAGAGTCAAAGATGATCAATTGGGTTGTTGATGTGCACCCTGAGTGAAAAAATTTGGCTGCAAAGGTGTTTGATAATGAAGTGGTAATAACCATTTTTAAATATGACCTAGTATATTTCAATATATTTGTATTACATAATGTATATATCCAGCCTTCTTGTATACTAACGTATATTTAATGTGTAATTTCAGTTTGACTTCAAGGAAATGAACTCAGAAGAAGAAGAAAGAGGAGATAGGACTTATCACGAAAGACAAACTTCAAGGCAACATGATAATGACGGGGTGGATATTCCTCAATACTTTCTACATTTCCAAGACCTAATACTTAGTAGTTGTGATATGTTGAACGAAAAAATAGATAAATTATTTGTGGAAATCGAAGACTTGCAAAAGATTATGAAAGAAAGAGGGGATCAAACTGATACCCCACAACAAAATGATGAACTGGAGAACAACAACGACCCTACAAATAGGGATGGACAAGGTGTCTTTGACGGTGGTAAAGGATAA

mRNA sequence

ATGGCGAAATTGCAAACAAGTAACGACAGGGTAGATGTAGATCATATTAACCTATTGGATGATGAGGAACAATTTGATAACTATCTTTGGGATAGAATAGCATACCACATTCCCTTTGACTTCAAGGAAATGAACTCAGAAGAAGAAGAAAGAGGAGATAGGACTTATCACGAAAGACAAACTTCAAGGCAACATGATAATGACGGGGTGGATATTCCTCAATACTTTCTACATTTCCAAGACCTAATACTTAGTAGTTGTGATATGTTGAACGAAAAAATAGATAAATTATTTGTGGAAATCGAAGACTTGCAAAAGATTATGAAAGAAAGAGGGGATCAAACTGATACCCCACAACAAAATGATGAACTGGAGAACAACAACGACCCTACAAATAGGGATGGACAAGGTGTCTTTGACGGTGGTAAAGGATAA

Coding sequence (CDS)

ATGGCGAAATTGCAAACAAGTAACGACAGGGTAGATGTAGATCATATTAACCTATTGGATGATGAGGAACAATTTGATAACTATCTTTGGGATAGAATAGCATACCACATTCCCTTTGACTTCAAGGAAATGAACTCAGAAGAAGAAGAAAGAGGAGATAGGACTTATCACGAAAGACAAACTTCAAGGCAACATGATAATGACGGGGTGGATATTCCTCAATACTTTCTACATTTCCAAGACCTAATACTTAGTAGTTGTGATATGTTGAACGAAAAAATAGATAAATTATTTGTGGAAATCGAAGACTTGCAAAAGATTATGAAAGAAAGAGGGGATCAAACTGATACCCCACAACAAAATGATGAACTGGAGAACAACAACGACCCTACAAATAGGGATGGACAAGGTGTCTTTGACGGTGGTAAAGGATAA

Protein sequence

MAKLQTSNDRVDVDHINLLDDEEQFDNYLWDRIAYHIPFDFKEMNSEEEERGDRTYHERQTSRQHDNDGVDIPQYFLHFQDLILSSCDMLNEKIDKLFVEIEDLQKIMKERGDQTDTPQQNDELENNNDPTNRDGQGVFDGGKG
Homology
BLAST of PI0005101 vs. ExPASy TrEMBL
Match: A0A5A7V8N4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G003890 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.8e-07
Identity = 44/128 (34.38%), Postives = 74/128 (57.81%), Query Frame = 0

Query: 29  LWDRIAYHIPFDFKEMNSEEEERGDRTYHER-------------QTSRQHDNDGVDIPQY 88
           L +R+  +  F+FK M  EE+     T+HER             + SRQ ++  V++P+Y
Sbjct: 16  LAERVFDNEQFEFKVMFLEEDFIEQSTFHERKPTKETRKRLEKGECSRQAEHTDVEVPKY 75

Query: 89  FLHFQDLILSSCDMLNEKIDKLFVEIEDLQKIMKERGDQTDTPQQNDELENNNDPTNRDG 144
           F  FQ+LI++S + LN K+DK+ VE+E L+K++KE+  QT    +N E ++N+   N  G
Sbjct: 76  FFRFQELIMASNEALNLKMDKMLVEVEGLKKLLKEKNSQTVEETENKERDDNDG--NDGG 135

BLAST of PI0005101 vs. ExPASy TrEMBL
Match: A0A5A7TWM9 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00090 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 9.9e-05
Identity = 42/126 (33.33%), Postives = 70/126 (55.56%), Query Frame = 0

Query: 32  RIAYHIPFDFKEMNSEEEERGDRTYHERQT-------------SRQHDNDGVDIPQYFLH 91
           R+  H  F +K M  ++       +HERQ+             SRQ  +  V++P+YFL 
Sbjct: 296 RVFDHEQFQYKAMFPDDNFVERSMFHERQSTKETHKRFKKGECSRQAKHTNVEVPKYFLK 355

Query: 92  FQDLILSSCDMLNEKIDKLFVEIEDLQKIMKERGDQTDTPQQNDEL-ENNNDPTNR-DGQ 143
           FQ+LI+++   LN K+DKL ++IE L+ ++KE+   T  P +N +  EN+ D  +R +G+
Sbjct: 356 FQELIMANNQALNVKLDKLLLKIEGLKNLLKEKESATVEPNENIQRDENDGDQGDRNNGE 415

BLAST of PI0005101 vs. NCBI nr
Match: KAA0062049.1 (uncharacterized protein E6C27_scaffold89G003890 [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 5.7e-07
Identity = 44/128 (34.38%), Postives = 74/128 (57.81%), Query Frame = 0

Query: 29  LWDRIAYHIPFDFKEMNSEEEERGDRTYHER-------------QTSRQHDNDGVDIPQY 88
           L +R+  +  F+FK M  EE+     T+HER             + SRQ ++  V++P+Y
Sbjct: 16  LAERVFDNEQFEFKVMFLEEDFIEQSTFHERKPTKETRKRLEKGECSRQAEHTDVEVPKY 75

Query: 89  FLHFQDLILSSCDMLNEKIDKLFVEIEDLQKIMKERGDQTDTPQQNDELENNNDPTNRDG 144
           F  FQ+LI++S + LN K+DK+ VE+E L+K++KE+  QT    +N E ++N+   N  G
Sbjct: 76  FFRFQELIMASNEALNLKMDKMLVEVEGLKKLLKEKNSQTVEETENKERDDNDG--NDGG 135

BLAST of PI0005101 vs. NCBI nr
Match: KAA0047364.1 (transposase [Cucumis melo var. makuwa] >TYK14041.1 transposase [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 2.0e-04
Identity = 42/126 (33.33%), Postives = 70/126 (55.56%), Query Frame = 0

Query: 32  RIAYHIPFDFKEMNSEEEERGDRTYHERQT-------------SRQHDNDGVDIPQYFLH 91
           R+  H  F +K M  ++       +HERQ+             SRQ  +  V++P+YFL 
Sbjct: 296 RVFDHEQFQYKAMFPDDNFVERSMFHERQSTKETHKRFKKGECSRQAKHTNVEVPKYFLK 355

Query: 92  FQDLILSSCDMLNEKIDKLFVEIEDLQKIMKERGDQTDTPQQNDEL-ENNNDPTNR-DGQ 143
           FQ+LI+++   LN K+DKL ++IE L+ ++KE+   T  P +N +  EN+ D  +R +G+
Sbjct: 356 FQELIMANNQALNVKLDKLLLKIEGLKNLLKEKESATVEPNENIQRDENDGDQGDRNNGE 415

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V8N42.8e-0734.38Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TWM99.9e-0533.33Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00090 PE... [more]
Match NameE-valueIdentityDescription
KAA0062049.15.7e-0734.38uncharacterized protein E6C27_scaffold89G003890 [Cucumis melo var. makuwa][more]
KAA0047364.12.0e-0433.33transposase [Cucumis melo var. makuwa] >TYK14041.1 transposase [Cucumis melo var... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 87..107
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..69
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 119..134
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..66
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 109..144

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0005101.1PI0005101.1mRNA