PI0005058 (gene) Melon (PI 482460) v1

Overview


Name	PI0005058
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrovirus-related Pol polyprotein from transposon 17.6
Location	chr07: 12705307 .. 12706141 (+)
RNA-Seq Expression	PI0005058
Synteny	PI0005058

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGAAGGTGAACAACAAGAATTCAGACTTGACTCTGAGATAGAGCAAACTTTTCGGACGAATAGAAGAGCAAGGCGGAGGTTAAACAAAACCAACAATATGAATAACCAAAATAACCAAAACAACCCTGCCAACCAGAATGCCCAAGAACAAAAGCCTACTTACTTAGCCCACGATTTGGACAGACATATACGGTCATACGCCTCACCAAACCTATATGATTTTAACCCTGGTATCGCTTACCCATTGTTTGGCAAGAATGCTAGGTTTGAAATCAAGCTTGTTTGGCAAGAATGCTTAGAAGCTCCTATAACCAGATTAAATCTACGTTGGACACTATGGCCAGCAATAGTCAGGAATGGTGAGATGATGGTTTCGGCTCGCGGTAAGAGAACAAAGGAAAGAAAGGAATCACAGACTGTCAGGGCTAAAATAGACCTAACTTTATTAGTGTATTTCTCCCCATTTTCATTCACATATGCATTAAAATGTTATTTTTATGCAGAATAATATTCTAGACACCGTTAGAGTCCAACGCCATGAAAAACGCTTAAATCGGAGTTCTAACGAAAAAGAAAGAGCAAAAAGAATCCAGGGGCATTTTCGAAAATTAGGAAAGATTTCGACCACTCAGAACGTACTATGTGTCTCCACCCAATGTGCGCCACGAGTCCAGCTCAAGGTCGTGAGTATGAATCTCAGACGCAATACTCTTTTTTCTTCGATTGTGGAAGACTGTCTCCTCCTCGCGCATGCCCAACTCGTTCGCCACGACCCAATCTGTTCGATCAGCTTCGTGCCCTCTTTTTCTTTCCACTCCGCCACACGTTAG

mRNA sequence

ATGAGTGAAGGTGAACAACAAGAATTCAGACTTGACTCTGAGATAGAGCAAACTTTTCGGACGAATAGAAGAGCAAGGCGGAGGTTAAACAAAACCAACAATATGAATAACCAAAATAACCAAAACAACCCTGCCAACCAGAATGCCCAAGAACAAAAGCCTACTTACTTAGCCCACGATTTGGACAGACATATACGGTCATACGCCTCACCAAACCTATATGATTTTAACCCTGGTATCGCTTACCCATTGTTTGGCAAGAATGCTAGGTTTGAAATCAAGCTTGTTTGGCAAGAATGCTTAGAAGCTCCTATAACCAGATTAAATCTACGTTGGACACTATGGCCAGCAATAGTCAGGAATGGTGAGATGATGGTTTCGGCTCGCGGTAAGAGAACAAAGGAAAGAAAGGAATCACAGACTAATAATATTCTAGACACCGTTAGAGTCCAACGCCATGAAAAACGCTTAAATCGGAGTTCTAACGAAAAAGAAAGAGCAAAAAGAATCCAGGGGCATTTTCGAAAATTAGGAAAGATTTCGACCACTCAGAACGTACTATGTGTCTCCACCCAATGTGCGCCACGAGTCCAGCTCAAGGTCGTGAGTATGAATCTCAGACGCAATACTCTTTTTTCTTCGATTGTGGAAGACTGTCTCCTCCTCGCGCATGCCCAACTCGTTCGCCACGACCCAATCTGTTCGATCAGCTTCGTGCCCTCTTTTTCTTTCCACTCCGCCACACGTTAG

Coding sequence (CDS)

ATGAGTGAAGGTGAACAACAAGAATTCAGACTTGACTCTGAGATAGAGCAAACTTTTCGGACGAATAGAAGAGCAAGGCGGAGGTTAAACAAAACCAACAATATGAATAACCAAAATAACCAAAACAACCCTGCCAACCAGAATGCCCAAGAACAAAAGCCTACTTACTTAGCCCACGATTTGGACAGACATATACGGTCATACGCCTCACCAAACCTATATGATTTTAACCCTGGTATCGCTTACCCATTGTTTGGCAAGAATGCTAGGTTTGAAATCAAGCTTGTTTGGCAAGAATGCTTAGAAGCTCCTATAACCAGATTAAATCTACGTTGGACACTATGGCCAGCAATAGTCAGGAATGGTGAGATGATGGTTTCGGCTCGCGGTAAGAGAACAAAGGAAAGAAAGGAATCACAGACTAATAATATTCTAGACACCGTTAGAGTCCAACGCCATGAAAAACGCTTAAATCGGAGTTCTAACGAAAAAGAAAGAGCAAAAAGAATCCAGGGGCATTTTCGAAAATTAGGAAAGATTTCGACCACTCAGAACGTACTATGTGTCTCCACCCAATGTGCGCCACGAGTCCAGCTCAAGGTCGTGAGTATGAATCTCAGACGCAATACTCTTTTTTCTTCGATTGTGGAAGACTGTCTCCTCCTCGCGCATGCCCAACTCGTTCGCCACGACCCAATCTGTTCGATCAGCTTCGTGCCCTCTTTTTCTTTCCACTCCGCCACACGTTAG

Protein sequence

MSEGEQQEFRLDSEIEQTFRTNRRARRRLNKTNNMNNQNNQNNPANQNAQEQKPTYLAHDLDRHIRSYASPNLYDFNPGIAYPLFGKNARFEIKLVWQECLEAPITRLNLRWTLWPAIVRNGEMMVSARGKRTKERKESQTNNILDTVRVQRHEKRLNRSSNEKERAKRIQGHFRKLGKISTTQNVLCVSTQCAPRVQLKVVSMNLRRNTLFSSIVEDCLLLAHAQLVRHDPICSISFVPSFSFHSATR

Homology

[Close]

BLAST of PI0005058 vs. ExPASy TrEMBL
Match: A0A5D3CAB5 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold796G00060 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.7e-20
Identity = 66/132 (50.00%), Postives = 81/132 (61.36%), Query Frame = 0


Query: 1   MSEGEQQEFRLDSEIEQTFRTNRRARRRLNKTNNMNNQNNQNNPANQNAQEQKPTYLAHD 60
           MSEGEQ +F +D EIE+ F+ NRR R+R  +TN  N+QNNQ  PANQ  Q    TYLAH+
Sbjct: 1   MSEGEQPKFVIDLEIERIFQRNRRQRKRRQRTNKSNSQNNQEAPANQAIQVVNLTYLAHN 60

Query: 61  LDRHIRSYASPNLYDFNPGIAYPLFGKNARFEIKLVW----------QECLEAPITRLNL 120
            DR IRS  SPNLY FNPGI YP FG+N RF+IK V           + CL  P+  L++
Sbjct: 61  RDRPIRSNTSPNLYGFNPGIDYPAFGENERFDIKPVMLSLLYRKINTRPCLLVPVAHLHI 120

Query: 121 RWTLWPAIVRNG 123
              L    +R G
Sbjct: 121 AACLSAYTMRQG 132

[Close]

BLAST of PI0005058 vs. ExPASy TrEMBL
Match: A0A5A7UXZ2 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold137G00610 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.7e-20
Identity = 66/132 (50.00%), Postives = 81/132 (61.36%), Query Frame = 0


Query: 1   MSEGEQQEFRLDSEIEQTFRTNRRARRRLNKTNNMNNQNNQNNPANQNAQEQKPTYLAHD 60
           MSEGEQ +F +D EIE+ F+ NRR R+R  +TN  N+QNNQ  PANQ  Q    TYLAH+
Sbjct: 1   MSEGEQPKFVIDLEIERIFQRNRRQRKRRQRTNKSNSQNNQEAPANQAIQVVNLTYLAHN 60

Query: 61  LDRHIRSYASPNLYDFNPGIAYPLFGKNARFEIKLVW----------QECLEAPITRLNL 120
            DR IRS  SPNLY FNPGI YP FG+N RF+IK V           + CL  P+  L++
Sbjct: 61  RDRPIRSNTSPNLYGFNPGIDYPAFGENERFDIKPVMLSLLHRKINTRPCLLVPVAHLHI 120

Query: 121 RWTLWPAIVRNG 123
              L    +R G
Sbjct: 121 AACLSAYTMRQG 132

[Close]

BLAST of PI0005058 vs. ExPASy TrEMBL
Match: A0A5A7UFP5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold437G00780 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.4e-19
Identity = 69/132 (52.27%), Postives = 82/132 (62.12%), Query Frame = 0


Query: 39  NNQNNPANQNAQEQKPTYLAHDLDRHIRSYASPNLYDFNPGIAYPLFGKNARFEIKLVWQ 98
           NNQNNPA+QNA+EQ  TYLAHDLD+ IRSYASPNLYDFN GI  P            VW 
Sbjct: 2   NNQNNPAHQNAKEQNLTYLAHDLDKPIRSYASPNLYDFNLGIFLP-----------NVWL 61

Query: 99  E----CLEAPITRLNLRWTLWPAIVRNGEMMVSARGKRTKE-RKESQTNNILDTVRVQRH 158
           E    CLEA ITRL +RWTL PAIVR+GEM V A  K+  + RKE +    L+ +     
Sbjct: 62  ENQEGCLEALITRLRIRWTLLPAIVRSGEMTVLACSKKVGDWRKEQRQAISLNPLLPPPF 121

Query: 159 EKRLNRSSNEKE 166
             RL +  + +E
Sbjct: 122 PDRLKKKGDNQE 122

[Close]

BLAST of PI0005058 vs. ExPASy TrEMBL
Match: A0A5A7V2U7 (Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001950 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 8.7e-17
Identity = 49/68 (72.06%), Postives = 53/68 (77.94%), Query Frame = 0


Query: 35  MNNQNNQNNPANQNAQEQKPTYLAHDLDRHIRSYASPNLYDFNPGIAYPLFGKNARFEIK 94
           MNNQNNQ  PANQ AQ   PTYLA D DR IRSYASPNLYDFNPGIAYP F +N RFEIK
Sbjct: 1   MNNQNNQGIPANQAAQGANPTYLADDRDRPIRSYASPNLYDFNPGIAYPTFSENTRFEIK 60

Query: 95  LVWQECLE 103
           LV  + ++
Sbjct: 61  LVMLQIIQ 68

[Close]

BLAST of PI0005058 vs. ExPASy TrEMBL
Match: A0A5A7UDN8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00900 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.1e-15
Identity = 44/56 (78.57%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 39 NNQNNPANQNAQEQKPTYLAHDLDRHIRSYASPNLYDFNPGIAYPLFGKNARFEIK 95
          NNQNNPA QN QEQ P YLAHDLD+ I+SYASPNLYDFNPGIAY  FG+N  FEIK
Sbjct: 2  NNQNNPAYQNTQEQNPAYLAHDLDKPIKSYASPNLYDFNPGIAYLAFGENVGFEIK 57

[Close]

BLAST of PI0005058 vs. NCBI nr
Match: TYK08803.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 109.8 bits (273), Expect = 3.5e-20
Identity = 66/132 (50.00%), Postives = 81/132 (61.36%), Query Frame = 0


Query: 1   MSEGEQQEFRLDSEIEQTFRTNRRARRRLNKTNNMNNQNNQNNPANQNAQEQKPTYLAHD 60
           MSEGEQ +F +D EIE+ F+ NRR R+R  +TN  N+QNNQ  PANQ  Q    TYLAH+
Sbjct: 1   MSEGEQPKFVIDLEIERIFQRNRRQRKRRQRTNKSNSQNNQEAPANQAIQVVNLTYLAHN 60

Query: 61  LDRHIRSYASPNLYDFNPGIAYPLFGKNARFEIKLVW----------QECLEAPITRLNL 120
            DR IRS  SPNLY FNPGI YP FG+N RF+IK V           + CL  P+  L++
Sbjct: 61  RDRPIRSNTSPNLYGFNPGIDYPAFGENERFDIKPVMLSLLYRKINTRPCLLVPVAHLHI 120

Query: 121 RWTLWPAIVRNG 123
              L    +R G
Sbjct: 121 AACLSAYTMRQG 132

[Close]

BLAST of PI0005058 vs. NCBI nr
Match: KAA0060833.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 109.8 bits (273), Expect = 3.5e-20
Identity = 66/132 (50.00%), Postives = 81/132 (61.36%), Query Frame = 0


Query: 1   MSEGEQQEFRLDSEIEQTFRTNRRARRRLNKTNNMNNQNNQNNPANQNAQEQKPTYLAHD 60
           MSEGEQ +F +D EIE+ F+ NRR R+R  +TN  N+QNNQ  PANQ  Q    TYLAH+
Sbjct: 1   MSEGEQPKFVIDLEIERIFQRNRRQRKRRQRTNKSNSQNNQEAPANQAIQVVNLTYLAHN 60

Query: 61  LDRHIRSYASPNLYDFNPGIAYPLFGKNARFEIKLVW----------QECLEAPITRLNL 120
            DR IRS  SPNLY FNPGI YP FG+N RF+IK V           + CL  P+  L++
Sbjct: 61  RDRPIRSNTSPNLYGFNPGIDYPAFGENERFDIKPVMLSLLHRKINTRPCLLVPVAHLHI 120

Query: 121 RWTLWPAIVRNG 123
              L    +R G
Sbjct: 121 AACLSAYTMRQG 132

[Close]

BLAST of PI0005058 vs. NCBI nr
Match: KAA0054793.1 (uncharacterized protein E6C27_scaffold437G00780 [Cucumis melo var. makuwa])

HSP 1 Score: 105.9 bits (263), Expect = 5.1e-19
Identity = 69/132 (52.27%), Postives = 82/132 (62.12%), Query Frame = 0


Query: 39  NNQNNPANQNAQEQKPTYLAHDLDRHIRSYASPNLYDFNPGIAYPLFGKNARFEIKLVWQ 98
           NNQNNPA+QNA+EQ  TYLAHDLD+ IRSYASPNLYDFN GI  P            VW 
Sbjct: 2   NNQNNPAHQNAKEQNLTYLAHDLDKPIRSYASPNLYDFNLGIFLP-----------NVWL 61

Query: 99  E----CLEAPITRLNLRWTLWPAIVRNGEMMVSARGKRTKE-RKESQTNNILDTVRVQRH 158
           E    CLEA ITRL +RWTL PAIVR+GEM V A  K+  + RKE +    L+ +     
Sbjct: 62  ENQEGCLEALITRLRIRWTLLPAIVRSGEMTVLACSKKVGDWRKEQRQAISLNPLLPPPF 121

Query: 159 EKRLNRSSNEKE 166
             RL +  + +E
Sbjct: 122 PDRLKKKGDNQE 122

[Close]

BLAST of PI0005058 vs. NCBI nr
Match: KAA0062403.1 (putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa] >TYK26578.1 putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 1.8e-16
Identity = 49/68 (72.06%), Postives = 53/68 (77.94%), Query Frame = 0


Query: 35  MNNQNNQNNPANQNAQEQKPTYLAHDLDRHIRSYASPNLYDFNPGIAYPLFGKNARFEIK 94
           MNNQNNQ  PANQ AQ   PTYLA D DR IRSYASPNLYDFNPGIAYP F +N RFEIK
Sbjct: 1   MNNQNNQGIPANQAAQGANPTYLADDRDRPIRSYASPNLYDFNPGIAYPTFSENTRFEIK 60

Query: 95  LVWQECLE 103
           LV  + ++
Sbjct: 61  LVMLQIIQ 68

[Close]

BLAST of PI0005058 vs. NCBI nr
Match: KAA0051815.1 (hypothetical protein E6C27_scaffold60G002300 [Cucumis melo var. makuwa] >TYK21429.1 hypothetical protein E5676_scaffold609G00900 [Cucumis melo var. makuwa])

HSP 1 Score: 92.8 bits (229), Expect = 4.4e-15
Identity = 44/56 (78.57%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 39 NNQNNPANQNAQEQKPTYLAHDLDRHIRSYASPNLYDFNPGIAYPLFGKNARFEIK 95
          NNQNNPA QN QEQ P YLAHDLD+ I+SYASPNLYDFNPGIAY  FG+N  FEIK
Sbjct: 2  NNQNNPAYQNTQEQNPAYLAHDLDKPIKSYASPNLYDFNPGIAYLAFGENVGFEIK 57

The following BLAST results are available for this feature:

BLAST of PI0005058 vs.


Match Name	E-value	Identity	Description

BLAST of PI0005058 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CAB5	1.7e-20	50.00	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak...	[more]
A0A5A7UXZ2	1.7e-20	50.00	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak...	[more]
A0A5A7UFP5	2.4e-19	52.27	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7V2U7	8.7e-17	72.06	Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=...	[more]
A0A5A7UDN8	2.1e-15	78.57	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0005058 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK08803.1	3.5e-20	50.00	Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw...	[more]
KAA0060833.1	3.5e-20	50.00	Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw...	[more]
KAA0054793.1	5.1e-19	52.27	uncharacterized protein E6C27_scaffold437G00780 [Cucumis melo var. makuwa]	[more]
KAA0062403.1	1.8e-16	72.06	putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa] >TYK...	[more]
KAA0051815.1	4.4e-15	78.57	hypothetical protein E6C27_scaffold60G002300 [Cucumis melo var. makuwa] >TYK2142...	[more]

BLAST of PI0005058 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 22..42
None	No IPR available	COILS	Coil	Coil	coord: 150..170
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0005058.1	PI0005058.1	mRNA