PI0005047 (gene) Melon (PI 482460) v1

Overview
NamePI0005047
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
Description30S ribosomal protein S8, chloroplastic
Locationtig00003741: 55769 .. 56173 (-)
RNA-Seq ExpressionPI0005047
SyntenyPI0005047
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAAGGACACTATTGCTAACATAATAACCTCTATTCGCAATGCTGACATGAATAGAAAAGGAATGGTTCGAATACCATCTACTAACATCACCGAAAACATTGTTAAAATACTTTTACGAGAAGGTTTTATTGAAAACGTAAGGAAACATCGGGAAAGCAACAAGGATTTTTGGGTTTTAACCCTACGACATAGAAGAAATAGGAAAGGACCATATAAAACGATTTTAAATTTAAAACGGATCAGTCGACCTGGTCTCCGAATATATTCTAACTATCAAAAAATTCCTAGAATTTTAGGCGGAATCGGCATTGTAATTCTTTCTACTTCTCGGGGTATAATGACAGACCGAGAAGCTCGACTACAGGGAATCGGCGGCGAAATTTTGTGTTATATATGGTAA

mRNA sequence

ATGGGTAAGGACACTATTGCTAACATAATAACCTCTATTCGCAATGCTGACATGAATAGAAAAGGAATGGTTCGAATACCATCTACTAACATCACCGAAAACATTGTTAAAATACTTTTACGAGAAGGTTTTATTGAAAACGTAAGGAAACATCGGGAAAGCAACAAGGATTTTTGGGTTTTAACCCTACGACATAGAAGAAATAGGAAAGGACCATATAAAACGATTTTAAATTTAAAACGGATCAGTCGACCTGGTCTCCGAATATATTCTAACTATCAAAAAATTCCTAGAATTTTAGGCGGAATCGGCATTGTAATTCTTTCTACTTCTCGGGGTATAATGACAGACCGAGAAGCTCGACTACAGGGAATCGGCGGCGAAATTTTGTGTTATATATGGTAA

Coding sequence (CDS)

ATGGGTAAGGACACTATTGCTAACATAATAACCTCTATTCGCAATGCTGACATGAATAGAAAAGGAATGGTTCGAATACCATCTACTAACATCACCGAAAACATTGTTAAAATACTTTTACGAGAAGGTTTTATTGAAAACGTAAGGAAACATCGGGAAAGCAACAAGGATTTTTGGGTTTTAACCCTACGACATAGAAGAAATAGGAAAGGACCATATAAAACGATTTTAAATTTAAAACGGATCAGTCGACCTGGTCTCCGAATATATTCTAACTATCAAAAAATTCCTAGAATTTTAGGCGGAATCGGCATTGTAATTCTTTCTACTTCTCGGGGTATAATGACAGACCGAGAAGCTCGACTACAGGGAATCGGCGGCGAAATTTTGTGTTATATATGGTAA

Protein sequence

MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRILGGIGIVILSTSRGIMTDREARLQGIGGEILCYIW
Homology
[Close]
BLAST of PI0005047 vs. ExPASy Swiss-Prot
Match: Q4VZK0 (30S ribosomal protein S8, chloroplastic OS=Cucumis sativus OX=3659 GN=rps8 PE=3 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 9.3e-71
Identity = 132/134 (98.51%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 1   MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWV 60
           MGKDTIANIITSIRNADMNRKGMVRIP+TNITENIVKILLREGFIENVRKHRESNKDFWV
Sbjct: 1   MGKDTIANIITSIRNADMNRKGMVRIPATNITENIVKILLREGFIENVRKHRESNKDFWV 60

Query: 61  LTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRILGGIGIVILSTSRGIMTDREA 120
           LTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRILGG+GIVILSTSRGIMTDREA
Sbjct: 61  LTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRILGGMGIVILSTSRGIMTDREA 120

Query: 121 RLQGIGGEILCYIW 135
           RLQGIGGEILCYIW
Sbjct: 121 RLQGIGGEILCYIW 134

[Close]
BLAST of PI0005047 vs. ExPASy Swiss-Prot
Match: Q49KW3 (30S ribosomal protein S8, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rps8 PE=3 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 4.2e-63
Identity = 119/134 (88.81%), Postives = 130/134 (97.01%), Query Frame = 0 

Query: 1   MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWV 60
           MG+DTIA+IITSIRNADMNRKG ++I STNITENIVKILLREGFI+NVRKH+E+NK F V
Sbjct: 1   MGRDTIADIITSIRNADMNRKGTIQIASTNITENIVKILLREGFIKNVRKHQENNKYFLV 60

Query: 61  LTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRILGGIGIVILSTSRGIMTDREA 120
           LTLRHRRNRKGPY+TILNLKRISRPGLRIYSNYQ+IPRILGG+GIVILSTSRGIMTDREA
Sbjct: 61  LTLRHRRNRKGPYRTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREA 120

Query: 121 RLQGIGGEILCYIW 135
           RL+GIGGEILCYIW
Sbjct: 121 RLEGIGGEILCYIW 134

[Close]
BLAST of PI0005047 vs. ExPASy Swiss-Prot
Match: A0ZZ70 (30S ribosomal protein S8, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps8 PE=3 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 3.5e-62
Identity = 118/134 (88.06%), Postives = 129/134 (96.27%), Query Frame = 0 

Query: 1   MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWV 60
           MGKDTIA+IITSIRNADMNRKG ++I STNITENIV+ILLREGFI+NVRKHRE NK F V
Sbjct: 1   MGKDTIADIITSIRNADMNRKGTIQIGSTNITENIVQILLREGFIDNVRKHRERNKYFLV 60

Query: 61  LTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRILGGIGIVILSTSRGIMTDREA 120
           LTLRHRRNRKGP++TILNL+RISRPGLRIYSNYQ+IPRILGG+GIVILSTSRGIMTDREA
Sbjct: 61  LTLRHRRNRKGPHRTILNLRRISRPGLRIYSNYQQIPRILGGMGIVILSTSRGIMTDREA 120

Query: 121 RLQGIGGEILCYIW 135
           RL+GIGGEILCYIW
Sbjct: 121 RLEGIGGEILCYIW 134

[Close]
BLAST of PI0005047 vs. ExPASy Swiss-Prot
Match: Q2L942 (30S ribosomal protein S8, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rps8 PE=3 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.3e-61
Identity = 118/134 (88.06%), Postives = 128/134 (95.52%), Query Frame = 0 

Query: 1   MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWV 60
           MGKDTIA+IITSIRNADMNRKG ++I STNITENIVKILLREGFI+NVRKHRE NK F V
Sbjct: 1   MGKDTIADIITSIRNADMNRKGTIQIGSTNITENIVKILLREGFIDNVRKHRERNKYFLV 60

Query: 61  LTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRILGGIGIVILSTSRGIMTDREA 120
           LTLRHRRNRKGP++TILNL+RISRPGLRIYSNYQ+IPRILGG+GIVILSTSRGIMTDREA
Sbjct: 61  LTLRHRRNRKGPHRTILNLRRISRPGLRIYSNYQQIPRILGGMGIVILSTSRGIMTDREA 120

Query: 121 RLQGIGGEILCYIW 135
           RL+GIGGEILC IW
Sbjct: 121 RLEGIGGEILCSIW 134

[Close]
BLAST of PI0005047 vs. ExPASy Swiss-Prot
Match: Q2MI65 (30S ribosomal protein S8, chloroplastic OS=Solanum lycopersicum OX=4081 GN=rps8 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 3.0e-61
Identity = 118/134 (88.06%), Postives = 127/134 (94.78%), Query Frame = 0 

Query: 1   MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWV 60
           MG+DTIA IITSIRNADM+RK +VRI STNITENIV+ILLREGFIENVRKHRE+NK F V
Sbjct: 1   MGRDTIAEIITSIRNADMDRKRVVRIASTNITENIVQILLREGFIENVRKHRENNKYFLV 60

Query: 61  LTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRILGGIGIVILSTSRGIMTDREA 120
           LTLRHRRNRK PY+ ILNLKRISRPGLRIYSNYQ+IPRILGG+GIVILSTSRGIMTDREA
Sbjct: 61  LTLRHRRNRKRPYRNILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREA 120

Query: 121 RLQGIGGEILCYIW 135
           RL+GIGGEILCYIW
Sbjct: 121 RLEGIGGEILCYIW 134

[Close]
BLAST of PI0005047 vs. ExPASy TrEMBL
Match: A0A249RZ88 (30S ribosomal protein S8, chloroplastic OS=Cucumis melo var. cantalupensis OX=3658 GN=rps8 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.5e-68
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 1   MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWV 60
           MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWV
Sbjct: 1   MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWV 60

Query: 61  LTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRILGGIGIVILSTSRGIMTDREA 120
           LTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRILGG+GIVILSTSRGIMTDREA
Sbjct: 61  LTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRILGGMGIVILSTSRGIMTDREA 120

Query: 121 RLQGIGGEILCYIW 135
           RLQGIGGEILCYIW
Sbjct: 121 RLQGIGGEILCYIW 134

[Close]
BLAST of PI0005047 vs. ExPASy TrEMBL
Match: A0A1S4EU50 (30S ribosomal protein S8, chloroplastic OS=Cucumis melo OX=3656 GN=rps8 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.5e-68
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 1   MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWV 60
           MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWV
Sbjct: 1   MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWV 60

Query: 61  LTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRILGGIGIVILSTSRGIMTDREA 120
           LTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRILGG+GIVILSTSRGIMTDREA
Sbjct: 61  LTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRILGGMGIVILSTSRGIMTDREA 120

Query: 121 RLQGIGGEILCYIW 135
           RLQGIGGEILCYIW
Sbjct: 121 RLQGIGGEILCYIW 134

[Close]
BLAST of PI0005047 vs. ExPASy TrEMBL
Match: A0A2Z2CM14 (30S ribosomal protein S8, chloroplastic OS=Coccinia grandis OX=387127 GN=rps8 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.5e-68
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 1   MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWV 60
           MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWV
Sbjct: 1   MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWV 60

Query: 61  LTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRILGGIGIVILSTSRGIMTDREA 120
           LTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRILGG+GIVILSTSRGIMTDREA
Sbjct: 61  LTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRILGGMGIVILSTSRGIMTDREA 120

Query: 121 RLQGIGGEILCYIW 135
           RLQGIGGEILCYIW
Sbjct: 121 RLQGIGGEILCYIW 134

[Close]
BLAST of PI0005047 vs. ExPASy TrEMBL
Match: A0A286NFR6 (30S ribosomal protein S8, chloroplastic OS=Cucumis melo var. flexuosus OX=1120798 GN=rps8 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.5e-68
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 1   MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWV 60
           MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWV
Sbjct: 1   MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWV 60

Query: 61  LTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRILGGIGIVILSTSRGIMTDREA 120
           LTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRILGG+GIVILSTSRGIMTDREA
Sbjct: 61  LTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRILGGMGIVILSTSRGIMTDREA 120

Query: 121 RLQGIGGEILCYIW 135
           RLQGIGGEILCYIW
Sbjct: 121 RLQGIGGEILCYIW 134

[Close]
BLAST of PI0005047 vs. ExPASy TrEMBL
Match: A0A249RXN0 (30S ribosomal protein S8, chloroplastic OS=Cucumis melo subsp. agrestis OX=217619 GN=rps8 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.5e-68
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 1   MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWV 60
           MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWV
Sbjct: 1   MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWV 60

Query: 61  LTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRILGGIGIVILSTSRGIMTDREA 120
           LTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRILGG+GIVILSTSRGIMTDREA
Sbjct: 61  LTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRILGGMGIVILSTSRGIMTDREA 120

Query: 121 RLQGIGGEILCYIW 135
           RLQGIGGEILCYIW
Sbjct: 121 RLQGIGGEILCYIW 134

[Close]
BLAST of PI0005047 vs. NCBI nr
Match: YP_004841819.1 (ribosomal protein S8 [Cucumis melo subsp. melo] >YP_009317421.1 ribosomal protein S8 [Coccinia grandis] >YP_009860109.1 ribosomal protein S8 [Cucumis melo subsp. agrestis] >ASY96609.1 ribosomal protein S8 [Cucumis melo var. conomon] >ASY96696.1 ribosomal protein S8 [Cucumis melo var. makuwa] >ASY96783.1 ribosomal protein S8 [Cucumis melo var. momordica] >ASY96870.1 ribosomal protein S8 [Cucumis melo var. dudaim] >ASY96957.1 ribosomal protein S8 [Cucumis melo var. cantalupo] >ASY97131.1 ribosomal protein S8 [Cucumis melo var. inodorus] >ASY97305.1 ribosomal protein S8 [Cucumis melo var. flexuosus] >QJF46420.1 ribosomal protein S8 [Cucumis melo])

HSP 1 Score: 268.5 bits (685), Expect = 3.2e-68
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 1   MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWV 60
           MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWV
Sbjct: 1   MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWV 60

Query: 61  LTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRILGGIGIVILSTSRGIMTDREA 120
           LTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRILGG+GIVILSTSRGIMTDREA
Sbjct: 61  LTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRILGGMGIVILSTSRGIMTDREA 120

Query: 121 RLQGIGGEILCYIW 135
           RLQGIGGEILCYIW
Sbjct: 121 RLQGIGGEILCYIW 134

[Close]
BLAST of PI0005047 vs. NCBI nr
Match: YP_009525221.1 (ribosomal protein S8 [Hodgsonia macrocarpa] >YP_009560871.1 ribosomal protein S8 [Trichosanthes kirilowii] >YP_009674426.1 ribosomal protein S8 [Siraitia grosvenorii] >YP_009738237.1 ribosomal protein S8 [Siraitia siamensis] >YP_009751941.1 ribosomal protein S8 [Cyclanthera pedata] >YP_009752362.1 ribosomal protein S8 [Bryonia marmorata] >YP_009752447.1 ribosomal protein S8 [Trichosanthes tricuspidata] >YP_009753293.1 ribosomal protein S8 [Nothoalsomitra suberosa] >YP_009753655.1 ribosomal protein S8 [Trichosanthes wallichiana] >QIT04085.1 ribosomal protein S8 [Luffa aegyptiaca] >QKX48510.1 ribosomal protein S8 [Luffa acutangula] >AXR94584.1 ribosomal protein S8 [Hodgsonia macrocarpa] >AXR94670.1 ribosomal protein S8 [Hodgsonia macrocarpa] >AXR94753.1 ribosomal protein S8 [Hodgsonia macrocarpa])

HSP 1 Score: 267.3 bits (682), Expect = 7.1e-68
Identity = 132/134 (98.51%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 1   MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWV 60
           MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWV
Sbjct: 1   MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWV 60

Query: 61  LTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRILGGIGIVILSTSRGIMTDREA 120
           LTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQ+IPRILGG+GIVILSTSRGIMTDREA
Sbjct: 61  LTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREA 120

Query: 121 RLQGIGGEILCYIW 135
           RLQGIGGEILCYIW
Sbjct: 121 RLQGIGGEILCYIW 134

[Close]
BLAST of PI0005047 vs. NCBI nr
Match: YP_009004078.1 (ribosomal protein S8 [Cucumis hystrix] >YP_009346517.1 ribosomal protein S8 [Cucumis x hytivus] >YP_247635.1 ribosomal protein S8 [Cucumis sativus] >Q4VZK0.1 RecName: Full=30S ribosomal protein S8, chloroplastic [Cucumis sativus] >ALF03337.1 ribosomal protein S8 [Cucumis sativus var. hardwickii] >AVE15367.1 ribosomal protein S8 [Cucumis sativus var. sativus] >AAZ94685.1 ribosomal protein S8 [Cucumis sativus] >ABI97452.1 ribosomal protein S8 [Cucumis sativus] >ABI98781.1 ribosomal protein S8 [Cucumis sativus])

HSP 1 Score: 267.3 bits (682), Expect = 7.1e-68
Identity = 132/134 (98.51%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 1   MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWV 60
           MGKDTIANIITSIRNADMNRKGMVRIP+TNITENIVKILLREGFIENVRKHRESNKDFWV
Sbjct: 1   MGKDTIANIITSIRNADMNRKGMVRIPATNITENIVKILLREGFIENVRKHRESNKDFWV 60

Query: 61  LTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRILGGIGIVILSTSRGIMTDREA 120
           LTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRILGG+GIVILSTSRGIMTDREA
Sbjct: 61  LTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRILGGMGIVILSTSRGIMTDREA 120

Query: 121 RLQGIGGEILCYIW 135
           RLQGIGGEILCYIW
Sbjct: 121 RLQGIGGEILCYIW 134

[Close]
BLAST of PI0005047 vs. NCBI nr
Match: YP_009751857.1 (ribosomal protein S8 [Indofevillea khasiana] >QIT04590.1 ribosomal protein S8 [Indofevillea khasiana] >QJS52358.1 ribosomal protein S8 [Indofevillea khasiana])

HSP 1 Score: 266.9 bits (681), Expect = 9.2e-68
Identity = 131/134 (97.76%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 1   MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWV 60
           MGKDTIANIITSIRNADMNRKGMVRIPSTNITENI+KILLREGFIENVRKHRESNKDFWV
Sbjct: 1   MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIIKILLREGFIENVRKHRESNKDFWV 60

Query: 61  LTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRILGGIGIVILSTSRGIMTDREA 120
           LTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQ+IPRILGG+GIVILSTSRGIMTDREA
Sbjct: 61  LTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREA 120

Query: 121 RLQGIGGEILCYIW 135
           RLQGIGGEILCYIW
Sbjct: 121 RLQGIGGEILCYIW 134

[Close]
BLAST of PI0005047 vs. NCBI nr
Match: YP_009326025.1 (ribosomal protein S8 [Citrullus lanatus] >YP_009348067.1 ribosomal protein S8 [Citrullus mucosospermus] >YP_009420830.1 ribosomal protein S8 [Citrullus colocynthis] >YP_009431678.1 ribosomal protein S8 [Citrullus rehmii] >YP_009456181.1 ribosomal protein S8 [Lagenaria siceraria] >YP_010131129.1 ribosomal protein S8 [Benincasa hispida] >APW82923.1 ribosomal protein S8 [Citrullus lanatus subsp. vulgaris] >QNM38566.1 ribosomal protein S8 [Lagenaria siceraria var. microcarpa] >QZL38717.1 ribosomal protein S8 [Citrullus ecirrhosus] >AHM88713.1 ribosomal protein S8 [Lagenaria siceraria] >AHM88772.1 ribosomal protein S8 [Lagenaria siceraria])

HSP 1 Score: 266.9 bits (681), Expect = 9.2e-68
Identity = 132/134 (98.51%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 1   MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWV 60
           MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWV
Sbjct: 1   MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWV 60

Query: 61  LTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRILGGIGIVILSTSRGIMTDREA 120
           LTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQ+IPRILGG+GIVILSTSRGIMTDREA
Sbjct: 61  LTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMGIVILSTSRGIMTDREA 120

Query: 121 RLQGIGGEILCYIW 135
           RLQGIGGEILCYIW
Sbjct: 121 RLQGIGGEILCYIW 134

[Close]
BLAST of PI0005047 vs. TAIR 10
Match: ATCG00770.1 (ribosomal protein S8 )

HSP 1 Score: 230.3 bits (586), Expect = 8.9e-61
Identity = 117/134 (87.31%), Postives = 126/134 (94.03%), Query Frame = 0 

Query: 1   MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWV 60
           MGKDTIA+IITSIRNADMNRKG VRI STNITE+IVKILLREGFIENVRKHRE+N+ F +
Sbjct: 1   MGKDTIADIITSIRNADMNRKGTVRIGSTNITESIVKILLREGFIENVRKHRENNQYFLI 60

Query: 61  LTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRILGGIGIVILSTSRGIMTDREA 120
           LTLRHRRN+K  YKTILNLKRISRPGLRIYSN Q+IPRILGGIGIVILSTS+GIMTDREA
Sbjct: 61  LTLRHRRNKKESYKTILNLKRISRPGLRIYSNSQRIPRILGGIGIVILSTSQGIMTDREA 120

Query: 121 RLQGIGGEILCYIW 135
           RL+ IGGEILCYIW
Sbjct: 121 RLKRIGGEILCYIW 134

The following BLAST results are available for this feature:
BLAST of PI0005047 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q4VZK09.3e-7198.5130S ribosomal protein S8, chloroplastic OS=Cucumis sativus OX=3659 GN=rps8 PE=3 ... [more]
Q49KW34.2e-6388.8130S ribosomal protein S8, chloroplastic OS=Eucalyptus globulus subsp. globulus O... [more]
A0ZZ703.5e-6288.0630S ribosomal protein S8, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps8 ... [more]
Q2L9421.3e-6188.0630S ribosomal protein S8, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rps8 PE... [more]
Q2MI653.0e-6188.0630S ribosomal protein S8, chloroplastic OS=Solanum lycopersicum OX=4081 GN=rps8 ... [more]
BLAST of PI0005047 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A249RZ881.5e-6899.2530S ribosomal protein S8, chloroplastic OS=Cucumis melo var. cantalupensis OX=36... [more]
A0A1S4EU501.5e-6899.2530S ribosomal protein S8, chloroplastic OS=Cucumis melo OX=3656 GN=rps8 PE=3 SV=... [more]
A0A2Z2CM141.5e-6899.2530S ribosomal protein S8, chloroplastic OS=Coccinia grandis OX=387127 GN=rps8 PE... [more]
A0A286NFR61.5e-6899.2530S ribosomal protein S8, chloroplastic OS=Cucumis melo var. flexuosus OX=112079... [more]
A0A249RXN01.5e-6899.2530S ribosomal protein S8, chloroplastic OS=Cucumis melo subsp. agrestis OX=21761... [more]
BLAST of PI0005047 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_004841819.13.2e-6899.25ribosomal protein S8 [Cucumis melo subsp. melo] >YP_009317421.1 ribosomal protei... [more]
YP_009525221.17.1e-6898.51ribosomal protein S8 [Hodgsonia macrocarpa] >YP_009560871.1 ribosomal protein S8... [more]
YP_009004078.17.1e-6898.51ribosomal protein S8 [Cucumis hystrix] >YP_009346517.1 ribosomal protein S8 [Cuc... [more]
YP_009751857.19.2e-6897.76ribosomal protein S8 [Indofevillea khasiana] >QIT04590.1 ribosomal protein S8 [I... [more]
YP_009326025.19.2e-6898.51ribosomal protein S8 [Citrullus lanatus] >YP_009348067.1 ribosomal protein S8 [C... [more]
BLAST of PI0005047 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00770.18.9e-6187.31ribosomal protein S8 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.1370.30coord: 1..76
e-value: 4.6E-29
score: 102.1
NoneNo IPR availableGENE3D3.30.1490.10coord: 77..134
e-value: 9.8E-30
score: 103.8
NoneNo IPR availablePANTHERPTHR11758:SF437S RIBOSOMAL PROTEIN S8, MITOCHONDRIALcoord: 1..133
IPR000630Ribosomal protein S8PFAMPF00410Ribosomal_S8coord: 4..134
e-value: 1.6E-42
score: 144.4
IPR000630Ribosomal protein S8PANTHERPTHR1175840S RIBOSOMAL PROTEIN S15Acoord: 1..133
IPR000630Ribosomal protein S8PROSITEPS00053RIBOSOMAL_S8coord: 104..121
IPR000630Ribosomal protein S8HAMAPMF_01302_BRibosomal_S8_Bcoord: 1..134
score: 29.640564
IPR035987Ribosomal protein S8 superfamilySUPERFAMILY56047Ribosomal protein S8coord: 1..134

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0005047.1PI0005047.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome