PI0005035 (gene) Melon (PI 482460) v1

Overview


Name	PI0005035
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon gag protein
Location	chr11: 15816451 .. 15816915 (+)
RNA-Seq Expression	PI0005035
Synteny	PI0005035

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTAATGTGACTACCTTACTAACTTCCTTTGTGCAAGGTGGATCCGTTAAAGTTGCAAAGTGCGGGGTGTGCGGTCTAGTCGGACATCCTAATGACAAGTGCCCTGACTTAATGGAAGAGGCAAATGTTATTAGGAAGTACGATCCTCATAGCAACACTTACAACGCCGGTTGGAGAGACAACCCTAATCTGAGATGGGGAAACGACAACCAAAGACCCTCGCAAGCAACCTCCTCTTCAAACAGTCAAGGTACAAATTTGGAAGATTTAGTTAAAGCTCTCGCTACTAATACTATCTCTTTTTAGAATGAAATGAAGCAACAAATGTCTCATCTAACAAATGCCATAAGTAAACTAGAAGGTAAAGGCAAACTTCCGGTTCAGCCTGATCATGCCAACGTAAGTGCCATCTCGCTTAGAAGCGTAAGATTCTGGAAACCCCTTCAAGCAAAGAAAAGGTAA

mRNA sequence

ATGCTTAATGTGACTACCTTACTAACTTCCTTTGTGCAAGGTGGATCCGTTAAAGTTGCAAAGTGCGGGGTGTGCGGTCTAGTCGGACATCCTAATGACAAGTGCCCTGACTTAATGGAAGAGGCAAATGTTATTAGGAAGTACGATCCTCATAGCAACACTTACAACGCCGGTTGGAGAGACAACCCTAATCTGAGATGGGGAAACGACAACCAAAGACCCTCGCAAGCAACCTCCTCTTCAAACAGTCAAGGTAAAGGCAAACTTCCGGTTCAGCCTGATCATGCCAACGTAAGTGCCATCTCGCTTAGAAGCGTAAGATTCTGGAAACCCCTTCAAGCAAAGAAAAGGTAA

Coding sequence (CDS)

ATGCTTAATGTGACTACCTTACTAACTTCCTTTGTGCAAGGTGGATCCGTTAAAGTTGCAAAGTGCGGGGTGTGCGGTCTAGTCGGACATCCTAATGACAAGTGCCCTGACTTAATGGAAGAGGCAAATGTTATTAGGAAGTACGATCCTCATAGCAACACTTACAACGCCGGTTGGAGAGACAACCCTAATCTGAGATGGGGAAACGACAACCAAAGACCCTCGCAAGCAACCTCCTCTTCAAACAGTCAAGGTAAAGGCAAACTTCCGGTTCAGCCTGATCATGCCAACGTAAGTGCCATCTCGCTTAGAAGCGTAAGATTCTGGAAACCCCTTCAAGCAAAGAAAAGGTAA

Protein sequence

MLNVTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLMEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNSQGKGKLPVQPDHANVSAISLRSVRFWKPLQAKKR

Homology

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BLAST of PI0005035 vs. ExPASy TrEMBL
Match: A0A5D3CB46 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold544G00170 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.9e-36
Identity = 82/142 (57.75%), Postives = 95/142 (66.90%), Query Frame = 0


Query: 1   MLNVTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLMEEANVIRKYDPHSNTYNAGWR 60
           MLN+TTLLTSFVQG   KV KCGVCGLVGHPNDKCP ++E+ N++R+YDPHSNTYN+GWR
Sbjct: 103 MLNMTTLLTSFVQGTPPKVTKCGVCGLVGHPNDKCPKVIEDVNIVRRYDPHSNTYNSGWR 162

Query: 61  DNPNLRWGNDNQRPSQATSSSNSQ------------------------------------ 106
           DN NLRWGNDNQ+ +QA S+S++Q                                    
Sbjct: 163 DNLNLRWGNDNQKYTQAPSTSSNQGTNLEDIIKALATNTLSFQQKMKQQMTQLTTAISKM 222

[Close]

BLAST of PI0005035 vs. ExPASy TrEMBL
Match: A0A5A7UAL2 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G001750 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.1e-35
Identity = 80/142 (56.34%), Postives = 93/142 (65.49%), Query Frame = 0


Query: 1   MLNVTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLMEEANVIRKYDPHSNTYNAGWR 60
           M N+TTLLTSFVQG  +KV KCGVC LVGHPNDKCP+++E+ N++RKYDPH NTYN GWR
Sbjct: 30  MFNMTTLLTSFVQGTPLKVTKCGVCCLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNLGWR 89

Query: 61  DNPNLRWGNDNQRPSQATSSSNSQG----------------------------------- 106
           DNPNLRWGNDNQ+ +QA  +S++QG                                   
Sbjct: 90  DNPNLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALITKTLSFQQEMKQQMTQLTTAISKM 149

[Close]

BLAST of PI0005035 vs. ExPASy TrEMBL
Match: A0A5A7V0Q7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G00020 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.5e-35
Identity = 81/142 (57.04%), Postives = 95/142 (66.90%), Query Frame = 0


Query: 1   MLNVTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLMEEANVIRKYDPHSNTYNAGWR 60
           MLN+TTLLTSFVQG   KV KCGVCGLVGHPNDKC  ++E+ N++R+YDPHSNTYN+GWR
Sbjct: 166 MLNMTTLLTSFVQGTPPKVTKCGVCGLVGHPNDKCLKVIEDVNIVRRYDPHSNTYNSGWR 225

Query: 61  DNPNLRWGNDNQRPSQATSSSNSQ------------------------------------ 106
           DNPNLRWGNDNQ+ +QA S+S++Q                                    
Sbjct: 226 DNPNLRWGNDNQKHTQAPSTSSNQGTNLEDIIKALGTNTLSFQQEMKQQMTQLTTAISKM 285

[Close]

BLAST of PI0005035 vs. ExPASy TrEMBL
Match: A0A1S3CQU8 (uncharacterized protein LOC103503291 OS=Cucumis melo OX=3656 GN=LOC103503291 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.5e-35
Identity = 79/142 (55.63%), Postives = 94/142 (66.20%), Query Frame = 0


Query: 1   MLNVTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLMEEANVIRKYDPHSNTYNAGWR 60
           MLN+TTLLTSFVQG ++KV KCGVCGLVG+PNDKCP ++E+ N++R+YDPH NTYN GWR
Sbjct: 53  MLNMTTLLTSFVQGTALKVTKCGVCGLVGYPNDKCPKVIEDVNIVRRYDPHGNTYNLGWR 112

Query: 61  DNPNLRWGNDNQRPSQATSSSNSQ------------------------------------ 106
           DNPNLRWGNDNQ+ +QA  +S++Q                                    
Sbjct: 113 DNPNLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQKMKQQMTQLTTVISKM 172

[Close]

BLAST of PI0005035 vs. ExPASy TrEMBL
Match: A0A5A7SQH8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold575G00200 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 2.0e-35
Identity = 79/141 (56.03%), Postives = 93/141 (65.96%), Query Frame = 0


Query: 1   MLNVTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLMEEANVIRKYDPHSNTYNAGWR 60
           MLN+TTLLTSFVQG  +KV KCGVCGLVG+PNDKCP ++E+ N++R+YDPH NTYN GWR
Sbjct: 162 MLNMTTLLTSFVQGTPLKVTKCGVCGLVGYPNDKCPKVIEDVNIVRRYDPHGNTYNLGWR 221

Query: 61  DNPNLRWGNDNQRPSQATSSSNSQ------------------------------------ 106
           DNPNLRWGNDNQ+ +QA  +S++Q                                    
Sbjct: 222 DNPNLRWGNDNQKHTQAPPTSSNQGTNLEDIIALATNTLSFQQEMKQQMTQLTTVLSKMD 281

[Close]

BLAST of PI0005035 vs. NCBI nr
Match: TYK07549.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 160.6 bits (405), Expect = 8.1e-36
Identity = 82/142 (57.75%), Postives = 95/142 (66.90%), Query Frame = 0


Query: 1   MLNVTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLMEEANVIRKYDPHSNTYNAGWR 60
           MLN+TTLLTSFVQG   KV KCGVCGLVGHPNDKCP ++E+ N++R+YDPHSNTYN+GWR
Sbjct: 103 MLNMTTLLTSFVQGTPPKVTKCGVCGLVGHPNDKCPKVIEDVNIVRRYDPHSNTYNSGWR 162

Query: 61  DNPNLRWGNDNQRPSQATSSSNSQ------------------------------------ 106
           DN NLRWGNDNQ+ +QA S+S++Q                                    
Sbjct: 163 DNLNLRWGNDNQKYTQAPSTSSNQGTNLEDIIKALATNTLSFQQKMKQQMTQLTTAISKM 222

[Close]

BLAST of PI0005035 vs. NCBI nr
Match: KAA0050529.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 159.1 bits (401), Expect = 2.4e-35
Identity = 80/142 (56.34%), Postives = 93/142 (65.49%), Query Frame = 0


Query: 1   MLNVTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLMEEANVIRKYDPHSNTYNAGWR 60
           M N+TTLLTSFVQG  +KV KCGVC LVGHPNDKCP+++E+ N++RKYDPH NTYN GWR
Sbjct: 30  MFNMTTLLTSFVQGTPLKVTKCGVCCLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNLGWR 89

Query: 61  DNPNLRWGNDNQRPSQATSSSNSQG----------------------------------- 106
           DNPNLRWGNDNQ+ +QA  +S++QG                                   
Sbjct: 90  DNPNLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALITKTLSFQQEMKQQMTQLTTAISKM 149

[Close]

BLAST of PI0005035 vs. NCBI nr
Match: KAA0061138.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 158.7 bits (400), Expect = 3.1e-35
Identity = 81/142 (57.04%), Postives = 95/142 (66.90%), Query Frame = 0


Query: 1   MLNVTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLMEEANVIRKYDPHSNTYNAGWR 60
           MLN+TTLLTSFVQG   KV KCGVCGLVGHPNDKC  ++E+ N++R+YDPHSNTYN+GWR
Sbjct: 166 MLNMTTLLTSFVQGTPPKVTKCGVCGLVGHPNDKCLKVIEDVNIVRRYDPHSNTYNSGWR 225

Query: 61  DNPNLRWGNDNQRPSQATSSSNSQ------------------------------------ 106
           DNPNLRWGNDNQ+ +QA S+S++Q                                    
Sbjct: 226 DNPNLRWGNDNQKHTQAPSTSSNQGTNLEDIIKALGTNTLSFQQEMKQQMTQLTTAISKM 285

[Close]

BLAST of PI0005035 vs. NCBI nr
Match: XP_008465649.1 (PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo])

HSP 1 Score: 158.7 bits (400), Expect = 3.1e-35
Identity = 79/142 (55.63%), Postives = 94/142 (66.20%), Query Frame = 0


Query: 1   MLNVTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLMEEANVIRKYDPHSNTYNAGWR 60
           MLN+TTLLTSFVQG ++KV KCGVCGLVG+PNDKCP ++E+ N++R+YDPH NTYN GWR
Sbjct: 53  MLNMTTLLTSFVQGTALKVTKCGVCGLVGYPNDKCPKVIEDVNIVRRYDPHGNTYNLGWR 112

Query: 61  DNPNLRWGNDNQRPSQATSSSNSQ------------------------------------ 106
           DNPNLRWGNDNQ+ +QA  +S++Q                                    
Sbjct: 113 DNPNLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQKMKQQMTQLTTVISKM 172

[Close]

BLAST of PI0005035 vs. NCBI nr
Match: KAA0032798.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK30356.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 158.3 bits (399), Expect = 4.0e-35
Identity = 79/141 (56.03%), Postives = 93/141 (65.96%), Query Frame = 0


Query: 1   MLNVTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLMEEANVIRKYDPHSNTYNAGWR 60
           MLN+TTLLTSFVQG  +KV KCGVCGLVG+PNDKCP ++E+ N++R+YDPH NTYN GWR
Sbjct: 162 MLNMTTLLTSFVQGTPLKVTKCGVCGLVGYPNDKCPKVIEDVNIVRRYDPHGNTYNLGWR 221

Query: 61  DNPNLRWGNDNQRPSQATSSSNSQ------------------------------------ 106
           DNPNLRWGNDNQ+ +QA  +S++Q                                    
Sbjct: 222 DNPNLRWGNDNQKHTQAPPTSSNQGTNLEDIIALATNTLSFQQEMKQQMTQLTTVLSKMD 281

The following BLAST results are available for this feature:

BLAST of PI0005035 vs.


Match Name	E-value	Identity	Description

BLAST of PI0005035 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CB46	3.9e-36	57.75	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7UAL2	1.1e-35	56.34	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5A7V0Q7	1.5e-35	57.04	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A1S3CQU8	1.5e-35	55.63	uncharacterized protein LOC103503291 OS=Cucumis melo OX=3656 GN=LOC103503291 PE=...	[more]
A0A5A7SQH8	2.0e-35	56.03	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of PI0005035 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK07549.1	8.1e-36	57.75	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0050529.1	2.4e-35	56.34	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0061138.1	3.1e-35	57.04	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
XP_008465649.1	3.1e-35	55.63	PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo]	[more]
KAA0032798.1	4.0e-35	56.03	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK30356.1 retrotranspos...	[more]

BLAST of PI0005035 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0005035.1	PI0005035.1	mRNA