PI0004990 (gene) Melon (PI 482460) v1

Overview
NamePI0004990
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Locationchr06: 17606766 .. 17607918 (-)
RNA-Seq ExpressionPI0004990
SyntenyPI0004990
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCCTCAGCTTCGAAATGTCAACGAACATCAATTAACTGGAAAGGTCTATGGTTCACGGTATGTTGTTTAAATTTCATTTACCTTAGCCAAAAGTTGTTTGTATGACTAATTATAGTTAATCTTAAATCTAAATATTAATTGAATAACACAGATGGAGAGATCAATTTCGTATGACTAGGTCTGTTACACATGTCGTGTCTTAGTATAGGTATATGTTTGACGTTCTTCAAGTTGACCAGGTACGTGAATGTTGTGCATGAATATTGTGTTTCATATTATTTGTTTTAATATAATATGTTATGTTTCAAATTATTTGGGAGCCATGCAAAACTGTCATGGAAGGTTTACCTAATTTCTGTACCAACAGTCAAGACATATGGCGGACGGTTAGTCCACTCATATGTTTTCACATTGGTGAGTGACATCATCCTAATAGAACAATTAGACAATTTGGTCTCAAACAAGATGTTCCATTGGACTGTAATACTCAATCGCTGTTGCATAATATTGACTTGAGAACTGCGGATTGGTCAGATAGAGTTGCACATTTGATGATGTGATGGCTAAATTGCAGAAGATTTATTGCTTTGGGGCCTACAATTGATCAATTCGATATGGATGTAAATGAGGAATACATCCACTGGTATACAATATATTACAAAGCTCTACATTATTAGATTAGGAGCAATTGTGAGTCATTTGATACATGTTTAAATATTGTATAATTATTTTAGATATAATTTATTTTAATATTTCATAGAGATCGAACAATAGTAGACTCCGTGATGTGGCAGATGATCCACAACACATTCTTAATATATGCAACGAAAATGAGCGGTACATGGAGAATTCAAAATATACATTATATGTATGATGTACCCATTGTACCAGCACCAACCCAAAGGAGACGTGCTAAAGTGCAAGAGCCTGAGTTTGACGAGGTTGACCATCACGTGGAAGAAGTGCCTCCTATGACACAAACACAAAATGAAGCTGGTTATGTTAGTCCAATGATGATGATGCTACCCTTTGGTATGAGCTATTATCCTGGTCAATCGTCATACTTCAGATCAGGATATTATAATTTAGAGGCTGCTCCATCATCGTCAAACTTTGGAACAAAATATTACAATTTAGGGACCGACTAA

mRNA sequence

ATGGCTCCTCAGCTTCGAAATGTCAACGAACATCAATTAACTGGAAAGGTCTATGGTTCACGGTATATGTTTGACGTTCTTCAAGTTGACCAGATGATCCACAACACATTCTTAATATATGCAACGAAAATGAGCGGTACATGGAGAATTCAAAATATACATTATATGTATGATGTACCCATTGTACCAGCACCAACCCAAAGGAGACGTGCTAAAGTGCAAGAGCCTGAGTTTGACGAGGTTGACCATCACGTGGAAGAAGTGCCTCCTATGACACAAACACAAAATGAAGCTGGTTATGTTAGTCCAATGATGATGATGCTACCCTTTGGTATGAGCTATTATCCTGGTCAATCGTCATACTTCAGATCAGGATATTATAATTTAGAGGCTGCTCCATCATCGTCAAACTTTGGAACAAAATATTACAATTTAGGGACCGACTAA

Coding sequence (CDS)

ATGGCTCCTCAGCTTCGAAATGTCAACGAACATCAATTAACTGGAAAGGTCTATGGTTCACGGTATATGTTTGACGTTCTTCAAGTTGACCAGATGATCCACAACACATTCTTAATATATGCAACGAAAATGAGCGGTACATGGAGAATTCAAAATATACATTATATGTATGATGTACCCATTGTACCAGCACCAACCCAAAGGAGACGTGCTAAAGTGCAAGAGCCTGAGTTTGACGAGGTTGACCATCACGTGGAAGAAGTGCCTCCTATGACACAAACACAAAATGAAGCTGGTTATGTTAGTCCAATGATGATGATGCTACCCTTTGGTATGAGCTATTATCCTGGTCAATCGTCATACTTCAGATCAGGATATTATAATTTAGAGGCTGCTCCATCATCGTCAAACTTTGGAACAAAATATTACAATTTAGGGACCGACTAA

Protein sequence

MAPQLRNVNEHQLTGKVYGSRYMFDVLQVDQMIHNTFLIYATKMSGTWRIQNIHYMYDVPIVPAPTQRRRAKVQEPEFDEVDHHVEEVPPMTQTQNEAGYVSPMMMMLPFGMSYYPGQSSYFRSGYYNLEAAPSSSNFGTKYYNLGTD
Homology
[Close]
BLAST of PI0004990 vs. ExPASy TrEMBL
Match: A0A5A7ULW8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G002120 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 5.5e-27
Identity = 86/195 (44.10%), Postives = 106/195 (54.36%), Query Frame = 0 

Query: 1   MAPQLRNVNEHQLTGKVYGSR---------YMFDVLQVDQMIH---NTFLIYATKMSGTW 60
           +APQL +VN +QL G+ YGSR           FD+    + IH   N   +Y T+     
Sbjct: 489 VAPQLLHVNPNQLHGRAYGSRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAM 548

Query: 61  R-----------------------------IQNIHYMYDVPIVPAPTQRRRAKVQEP-EF 120
                                         ++NIHYMYDVPIV AP Q+RR  VQEP + 
Sbjct: 549 SHLRSNNIRLRNVADDLQQVLNICNDNEQYMENIHYMYDVPIVLAPVQKRRPLVQEPDQL 608

Query: 121 DEVDHHVEEVPPM--TQTQNEAGYVSPMMMMLPFGMSYYP---GQSSYFRSGYYNLEAAP 149
           +EVD H EEVPPM  TQTQ+E  YV P+MMM  FG +YY    GQSS F  GYYN EA  
Sbjct: 609 EEVDQHGEEVPPMTQTQTQSEHSYVCPVMMMPTFGTTYYDSKVGQSSDFERGYYNSEAGQ 668

[Close]
BLAST of PI0004990 vs. ExPASy TrEMBL
Match: A0A5A7SU33 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold400G00810 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 7.2e-27
Identity = 68/103 (66.02%), Postives = 80/103 (77.67%), Query Frame = 0 

Query: 50  IQNIHYMYDVPIVPAPTQRRRAKVQEP-EFDEVDHHVEEVPPMTQTQNEAGYVSPMMMML 109
           ++NIHYMYDVPIVPAP QRRR  VQEP + +EVD H EEVPPMTQTQ+E  YVSP+MMM 
Sbjct: 591 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQSEHNYVSPVMMMP 650

Query: 110 PFGMSYYP---GQSSYFRSGYYNLEAAPSSSNFGTKYYNLGTD 149
            FG +YY    GQSS F  GYYN EA  SS++FG +YY+LG+D
Sbjct: 651 TFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSD 693

[Close]
BLAST of PI0004990 vs. ExPASy TrEMBL
Match: A0A5A7VIP6 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G001330 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 7.2e-27
Identity = 68/103 (66.02%), Postives = 80/103 (77.67%), Query Frame = 0 

Query: 50  IQNIHYMYDVPIVPAPTQRRRAKVQEP-EFDEVDHHVEEVPPMTQTQNEAGYVSPMMMML 109
           ++NIHYMYDVPIVPAP QRRR  VQEP + +EVD H EEVPPMTQTQ+E  YVSP+MMM 
Sbjct: 442 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQSEHNYVSPVMMMP 501

Query: 110 PFGMSYYP---GQSSYFRSGYYNLEAAPSSSNFGTKYYNLGTD 149
            FG +YY    GQSS F  GYYN EA  SS++FG +YY+LG+D
Sbjct: 502 TFGTTYYDSEVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSD 544

[Close]
BLAST of PI0004990 vs. ExPASy TrEMBL
Match: A0A5A7UKC7 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold222G001140 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 2.1e-26
Identity = 67/103 (65.05%), Postives = 80/103 (77.67%), Query Frame = 0 

Query: 50  IQNIHYMYDVPIVPAPTQRRRAKVQEP-EFDEVDHHVEEVPPMTQTQNEAGYVSPMMMML 109
           ++NIHYMYDVPIVPAP QRRR  VQEP + +EVD H EEVPPMTQT++E  YVSP+MMM 
Sbjct: 599 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTKSEHNYVSPVMMMP 658

Query: 110 PFGMSYYP---GQSSYFRSGYYNLEAAPSSSNFGTKYYNLGTD 149
            FG +YY    GQSS F  GYYN EA  SS++FG +YY+LG+D
Sbjct: 659 TFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSD 701

[Close]
BLAST of PI0004990 vs. ExPASy TrEMBL
Match: A0A5A7U558 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00220 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 4.7e-26
Identity = 67/103 (65.05%), Postives = 81/103 (78.64%), Query Frame = 0 

Query: 50  IQNIHYMYDVPIVPAPTQRRRAKVQEP-EFDEVDHHVEEVPPMTQTQNEAGYVSPMMMML 109
           ++NIHYMYDVPI  AP QRR A VQ+P + +EVD HVEE+P MTQTQ+E  YVSP+MMM 
Sbjct: 141 MENIHYMYDVPITLAPVQRRCALVQKPDQLEEVDQHVEEMPLMTQTQSEHSYVSPVMMMS 200

Query: 110 PFGMSYYP---GQSSYFRSGYYNLEAAPSSSNFGTKYYNLGTD 149
            FG +YY    GQSS F +GYYN EA+PSSSNFG +YY+LG+D
Sbjct: 201 AFGTTYYDLGVGQSSDFGTGYYNSEASPSSSNFGQQYYDLGSD 243

[Close]
BLAST of PI0004990 vs. NCBI nr
Match: KAA0054449.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 130.6 bits (327), Expect = 1.1e-26
Identity = 86/195 (44.10%), Postives = 106/195 (54.36%), Query Frame = 0 

Query: 1   MAPQLRNVNEHQLTGKVYGSR---------YMFDVLQVDQMIH---NTFLIYATKMSGTW 60
           +APQL +VN +QL G+ YGSR           FD+    + IH   N   +Y T+     
Sbjct: 489 VAPQLLHVNPNQLHGRAYGSRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAM 548

Query: 61  R-----------------------------IQNIHYMYDVPIVPAPTQRRRAKVQEP-EF 120
                                         ++NIHYMYDVPIV AP Q+RR  VQEP + 
Sbjct: 549 SHLRSNNIRLRNVADDLQQVLNICNDNEQYMENIHYMYDVPIVLAPVQKRRPLVQEPDQL 608

Query: 121 DEVDHHVEEVPPM--TQTQNEAGYVSPMMMMLPFGMSYYP---GQSSYFRSGYYNLEAAP 149
           +EVD H EEVPPM  TQTQ+E  YV P+MMM  FG +YY    GQSS F  GYYN EA  
Sbjct: 609 EEVDQHGEEVPPMTQTQTQSEHSYVCPVMMMPTFGTTYYDSKVGQSSDFERGYYNSEAGQ 668

[Close]
BLAST of PI0004990 vs. NCBI nr
Match: KAA0067080.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 130.2 bits (326), Expect = 1.5e-26
Identity = 68/103 (66.02%), Postives = 80/103 (77.67%), Query Frame = 0 

Query: 50  IQNIHYMYDVPIVPAPTQRRRAKVQEP-EFDEVDHHVEEVPPMTQTQNEAGYVSPMMMML 109
           ++NIHYMYDVPIVPAP QRRR  VQEP + +EVD H EEVPPMTQTQ+E  YVSP+MMM 
Sbjct: 442 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQSEHNYVSPVMMMP 501

Query: 110 PFGMSYYP---GQSSYFRSGYYNLEAAPSSSNFGTKYYNLGTD 149
            FG +YY    GQSS F  GYYN EA  SS++FG +YY+LG+D
Sbjct: 502 TFGTTYYDSEVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSD 544

[Close]
BLAST of PI0004990 vs. NCBI nr
Match: KAA0034013.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 130.2 bits (326), Expect = 1.5e-26
Identity = 68/103 (66.02%), Postives = 80/103 (77.67%), Query Frame = 0 

Query: 50  IQNIHYMYDVPIVPAPTQRRRAKVQEP-EFDEVDHHVEEVPPMTQTQNEAGYVSPMMMML 109
           ++NIHYMYDVPIVPAP QRRR  VQEP + +EVD H EEVPPMTQTQ+E  YVSP+MMM 
Sbjct: 591 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQSEHNYVSPVMMMP 650

Query: 110 PFGMSYYP---GQSSYFRSGYYNLEAAPSSSNFGTKYYNLGTD 149
            FG +YY    GQSS F  GYYN EA  SS++FG +YY+LG+D
Sbjct: 651 TFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSD 693

[Close]
BLAST of PI0004990 vs. NCBI nr
Match: KAA0055624.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 128.6 bits (322), Expect = 4.3e-26
Identity = 67/103 (65.05%), Postives = 80/103 (77.67%), Query Frame = 0 

Query: 50  IQNIHYMYDVPIVPAPTQRRRAKVQEP-EFDEVDHHVEEVPPMTQTQNEAGYVSPMMMML 109
           ++NIHYMYDVPIVPAP QRRR  VQEP + +EVD H EEVPPMTQT++E  YVSP+MMM 
Sbjct: 599 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTKSEHNYVSPVMMMP 658

Query: 110 PFGMSYYP---GQSSYFRSGYYNLEAAPSSSNFGTKYYNLGTD 149
            FG +YY    GQSS F  GYYN EA  SS++FG +YY+LG+D
Sbjct: 659 TFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSD 701

[Close]
BLAST of PI0004990 vs. NCBI nr
Match: KAA0050408.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa] >TYJ97999.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 127.5 bits (319), Expect = 9.6e-26
Identity = 67/103 (65.05%), Postives = 81/103 (78.64%), Query Frame = 0 

Query: 50  IQNIHYMYDVPIVPAPTQRRRAKVQEP-EFDEVDHHVEEVPPMTQTQNEAGYVSPMMMML 109
           ++NIHYMYDVPI  AP QRR A VQ+P + +EVD HVEE+P MTQTQ+E  YVSP+MMM 
Sbjct: 141 MENIHYMYDVPITLAPVQRRCALVQKPDQLEEVDQHVEEMPLMTQTQSEHSYVSPVMMMS 200

Query: 110 PFGMSYYP---GQSSYFRSGYYNLEAAPSSSNFGTKYYNLGTD 149
            FG +YY    GQSS F +GYYN EA+PSSSNFG +YY+LG+D
Sbjct: 201 AFGTTYYDLGVGQSSDFGTGYYNSEASPSSSNFGQQYYDLGSD 243

The following BLAST results are available for this feature:
BLAST of PI0004990 vs.
Match NameE-valueIdentityDescription
BLAST of PI0004990 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7ULW85.5e-2744.10Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5A7SU337.2e-2766.02Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
A0A5A7VIP67.2e-2766.02Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5A7UKC72.1e-2665.05Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
A0A5A7U5584.7e-2665.05Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
BLAST of PI0004990 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0054449.11.1e-2644.10mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
KAA0067080.11.5e-2666.02mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
KAA0034013.11.5e-2666.02serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
KAA0055624.14.3e-2665.05serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
KAA0050408.19.6e-2665.05mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
BLAST of PI0004990 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0004990.1PI0004990.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010073 meristem maintenance