PI0004971 (gene) Melon (PI 482460) v1

Overview
NamePI0004971
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Locationchr01: 14301982 .. 14302161 (+)
RNA-Seq ExpressionPI0004971
SyntenyPI0004971
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACACGGACGCGGCTGCGGAGAACAGAACGAATATCTGTACTATGAAGCACCTACAAACGTATCAAATCCACAAGAGTACCAACAAGAACCAGAGAATCAAGAGGAGTCAGGGCAACCTAGAGTTCAGAGTCGACGATGACAACCAGCTCGAAATTGACGAAGTCCGGGTTGTGTAA

mRNA sequence

ATGGACACGGACGCGGCTGCGGAGAACAGAACGAATATCTGTACTATGAAGCACCTACAAACGTATCAAATCCACAAGAGTACCAACAAGAACCAGAGAATCAAGAGGAGTCAGGGCAACCTAGAGTTCAGAGTCGACGATGACAACCAGCTCGAAATTGACGAAGTCCGGGTTGTGTAA

Coding sequence (CDS)

ATGGACACGGACGCGGCTGCGGAGAACAGAACGAATATCTGTACTATGAAGCACCTACAAACGTATCAAATCCACAAGAGTACCAACAAGAACCAGAGAATCAAGAGGAGTCAGGGCAACCTAGAGTTCAGAGTCGACGATGACAACCAGCTCGAAATTGACGAAGTCCGGGTTGTGTAA

Protein sequence

MDTDAAAENRTNICTMKHLQTYQIHKSTNKNQRIKRSQGNLEFRVDDDNQLEIDEVRVV
Homology
BLAST of PI0004971 vs. ExPASy TrEMBL
Match: A0A5D3C2V9 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G001060 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 9.0e-13
Identity = 42/59 (71.19%), Postives = 47/59 (79.66%), Query Frame = 0

Query: 1   MDTDAAAENRTNICTMKHLQTYQIHKSTNKNQRIKRSQGNLEFRVDDDNQLEIDEVRVV 60
           MDTD A  N  NIC MKHLQ YQI KSTNKNQR KR++ N+E RVD +NQLEID+VRVV
Sbjct: 158 MDTDVAMGNIMNICIMKHLQMYQIDKSTNKNQRTKRTENNIELRVDVNNQLEIDDVRVV 216

BLAST of PI0004971 vs. ExPASy TrEMBL
Match: A0A5A7VF64 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00200 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.0e-12
Identity = 41/56 (73.21%), Postives = 45/56 (80.36%), Query Frame = 0

Query: 1   MDTDAAAENRTNICTMKHLQTYQIHKSTNKNQRIKRSQGNLEFRVDDDNQLEIDEV 57
           MD D A  N TNIC MKHLQ YQI KSTNKNQR KR++ N+EFRVD DNQLEID+V
Sbjct: 135 MDMDVAMGNITNICIMKHLQMYQIDKSTNKNQRTKRTENNIEFRVDVDNQLEIDDV 190

BLAST of PI0004971 vs. ExPASy TrEMBL
Match: A0A5A7TDY5 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G00990 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.9e-11
Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 0

Query: 6   AAENRTNICTMKHLQTYQIHKSTNKNQRIKRSQGNLEFRVDDDNQLEIDEVRVV 60
           A  N TNIC MKHLQ YQI KSTNKNQR KR++ N+EFRV+ DNQL+IDEV+VV
Sbjct: 352 ALGNITNICIMKHLQMYQIDKSTNKNQRTKRTENNIEFRVNVDNQLKIDEVQVV 405

BLAST of PI0004971 vs. ExPASy TrEMBL
Match: A0A5A7TI03 (Stress-response A/B barrel domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold708G00480 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 9.0e-05
Identity = 26/36 (72.22%), Postives = 32/36 (88.89%), Query Frame = 0

Query: 22 YQIHKSTNKNQRIKRSQGNLEFRVDDDNQLEIDEVR 58
          YQI KSTNKNQR KR+Q N+EF+VD DNQLEID+++
Sbjct: 26 YQIDKSTNKNQRTKRTQNNIEFKVDIDNQLEIDDIQ 61

BLAST of PI0004971 vs. ExPASy TrEMBL
Match: A0A5D3CD18 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1503G00530 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.0e-04
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 0

Query: 1   MDTDAAAENRTNICTMKHLQTYQIHKSTNKNQRIKRSQGNL 42
           MD D    N TNIC MKHLQ YQI KSTNKNQR KR++ ++
Sbjct: 106 MDMDVTMGNITNICIMKHLQMYQIDKSTNKNQRTKRTENHI 146

BLAST of PI0004971 vs. NCBI nr
Match: KAA0040602.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa] >TYK05644.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 1.9e-12
Identity = 42/59 (71.19%), Postives = 47/59 (79.66%), Query Frame = 0

Query: 1   MDTDAAAENRTNICTMKHLQTYQIHKSTNKNQRIKRSQGNLEFRVDDDNQLEIDEVRVV 60
           MDTD A  N  NIC MKHLQ YQI KSTNKNQR KR++ N+E RVD +NQLEID+VRVV
Sbjct: 158 MDTDVAMGNIMNICIMKHLQMYQIDKSTNKNQRTKRTENNIELRVDVNNQLEIDDVRVV 216

BLAST of PI0004971 vs. NCBI nr
Match: KAA0066693.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa] >TYK27843.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 4.1e-12
Identity = 41/56 (73.21%), Postives = 45/56 (80.36%), Query Frame = 0

Query: 1   MDTDAAAENRTNICTMKHLQTYQIHKSTNKNQRIKRSQGNLEFRVDDDNQLEIDEV 57
           MD D A  N TNIC MKHLQ YQI KSTNKNQR KR++ N+EFRVD DNQLEID+V
Sbjct: 135 MDMDVAMGNITNICIMKHLQMYQIDKSTNKNQRTKRTENNIEFRVDVDNQLEIDDV 190

BLAST of PI0004971 vs. NCBI nr
Match: KAA0041168.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 1.0e-10
Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 0

Query: 6   AAENRTNICTMKHLQTYQIHKSTNKNQRIKRSQGNLEFRVDDDNQLEIDEVRVV 60
           A  N TNIC MKHLQ YQI KSTNKNQR KR++ N+EFRV+ DNQL+IDEV+VV
Sbjct: 352 ALGNITNICIMKHLQMYQIDKSTNKNQRTKRTENNIEFRVNVDNQLKIDEVQVV 405

BLAST of PI0004971 vs. NCBI nr
Match: KAA0040939.1 (stress-response A/B barrel domain-containing protein [Cucumis melo var. makuwa] >TYK20318.1 stress-response A/B barrel domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 55.5 bits (132), Expect = 1.9e-04
Identity = 26/36 (72.22%), Postives = 32/36 (88.89%), Query Frame = 0

Query: 22 YQIHKSTNKNQRIKRSQGNLEFRVDDDNQLEIDEVR 58
          YQI KSTNKNQR KR+Q N+EF+VD DNQLEID+++
Sbjct: 26 YQIDKSTNKNQRTKRTQNNIEFKVDIDNQLEIDDIQ 61

BLAST of PI0004971 vs. NCBI nr
Match: TYK08229.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 4.1e-04
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 0

Query: 1   MDTDAAAENRTNICTMKHLQTYQIHKSTNKNQRIKRSQGNL 42
           MD D    N TNIC MKHLQ YQI KSTNKNQR KR++ ++
Sbjct: 106 MDMDVTMGNITNICIMKHLQMYQIDKSTNKNQRTKRTENHI 146

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C2V99.0e-1371.19Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5A7VF642.0e-1273.21Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5A7TDY54.9e-1172.22Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
A0A5A7TI039.0e-0572.22Stress-response A/B barrel domain-containing protein OS=Cucumis melo var. makuwa... [more]
A0A5D3CD182.0e-0463.41GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
Match NameE-valueIdentityDescription
KAA0040602.11.9e-1271.19mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
KAA0066693.14.1e-1273.21mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
KAA0041168.11.0e-1072.22serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
KAA0040939.11.9e-0472.22stress-response A/B barrel domain-containing protein [Cucumis melo var. makuwa] ... [more]
TYK08229.14.1e-0463.41GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0004971.1PI0004971.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010073 meristem maintenance