PI0004901 (gene) Melon (PI 482460) v1

Overview


Name	PI0004901
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	glycine-rich protein 5-like
Location	chr12: 3889160 .. 3889820 (-)
RNA-Seq Expression	PI0004901
Synteny	PI0004901

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGTAAGTGGAAAATTGATGGAATAACATAAAAAAAAAAGAGCAAACATTATTCCTCAAGAATTATTTGCTCATCTTTTTTTTTTTTTTAAAGTTCATCCAACAAGGAATGCATGGGAAGTCTCAACTAAAAGGCAGATTAGGAGATCCGAATCAGTAAACTGCCCAGCCACGGGTAATTTATGATATCTTGATGCCATATAGTTTTACCCTTTTTTTCACTTCATAAACTTCTATAAATTGCAACATTCAAAACTCTTAATTCCCATCAAAACAAATTATTTTTTTTAAAAAAAATTATGGGTTCTTTGGCTTTCAAATATCTCTGGCTGGTGGTTCTGTGTGCACTAATTTGGGCCTCAGAGCCCAGAAAACTTGTAATTACAAATGGGGGAGAGATTGAGAGTGAAAAGACACTGCCTTTCCAGTTCTTTCCTGGATACGGGGGCGGGCTCGGCGGTGGCGGAGGGTTTGGTGGCGGCGGCGGTGGTGGGTTAGGTGGTGGTTCGGGCTTCGGCAGTGGAGGTGGAGGGGGTTTTGGATCTGGCATTGGGGGGCTAGGCAGTGGTGGCGGTGGAGGGTTTGGCGGTGGTGGTGGCATTTTAGGTGGCGGAGCTGGCGGAGGAGCTGGTGGTGGATTTGGAGGTGGACTGCCTTAA

mRNA sequence

ATGATGAATGCATGGGAAGTCTCAACTAAAAGGCAGATTAGGAGATCCGAATCAGTAAACTGCCCAGCCACGGAGCCCAGAAAACTTGTAATTACAAATGGGGGAGAGATTGAGAGTGAAAAGACACTGCCTTTCCAGTTCTTTCCTGGATACGGGGGCGGGCTCGGCGGTGGCGGAGGGTTTGGTGGCGGCGGCGGTGGTGGGTTAGGTGGTGGTTCGGGCTTCGGCAGTGGAGGTGGAGGGGGTTTTGGATCTGGCATTGGGGGGCTAGGCAGTGGTGGCGGTGGAGGGTTTGGCGGTGGTGGTGGCATTTTAGGTGGCGGAGCTGGCGGAGGAGCTGGTGGTGGATTTGGAGGTGGACTGCCTTAA

Coding sequence (CDS)

ATGATGAATGCATGGGAAGTCTCAACTAAAAGGCAGATTAGGAGATCCGAATCAGTAAACTGCCCAGCCACGGAGCCCAGAAAACTTGTAATTACAAATGGGGGAGAGATTGAGAGTGAAAAGACACTGCCTTTCCAGTTCTTTCCTGGATACGGGGGCGGGCTCGGCGGTGGCGGAGGGTTTGGTGGCGGCGGCGGTGGTGGGTTAGGTGGTGGTTCGGGCTTCGGCAGTGGAGGTGGAGGGGGTTTTGGATCTGGCATTGGGGGGCTAGGCAGTGGTGGCGGTGGAGGGTTTGGCGGTGGTGGTGGCATTTTAGGTGGCGGAGCTGGCGGAGGAGCTGGTGGTGGATTTGGAGGTGGACTGCCTTAA

Protein sequence

MMNAWEVSTKRQIRRSESVNCPATEPRKLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGGGGGGGLGGGSGFGSGGGGGFGSGIGGLGSGGGGGFGGGGGILGGGAGGGAGGGFGGGLP

Homology

[Close]

BLAST of PI0004901 vs. ExPASy TrEMBL
Match: A0A0A0LS00 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G062340 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 7.3e-25
Identity = 99/102 (97.06%), Postives = 100/102 (98.04%), Query Frame = 0


Query: 23  ATEPRKLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGGGGGGGLGGGSGFGSGGGGG 82
           A+EPRKLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGGGGGGGLGGGSGFGSGGGGG
Sbjct: 20  ASEPRKLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGGGGGGGLGGGSGFGSGGGGG 79

Query: 83  FGSGIGGLGSGGGGGF--GGGGGILGGGAGGGAGGGFGGGLP 123
           FGSGIGGLGSGGGGGF  GGGGGILGGGAGGGAGGGFGGGLP
Sbjct: 80  FGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGAGGGFGGGLP 121

[Close]

BLAST of PI0004901 vs. ExPASy TrEMBL
Match: A0A5D3BMG3 (Glycine-rich cell wall structural protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005650 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 4.7e-24
Identity = 97/102 (95.10%), Postives = 99/102 (97.06%), Query Frame = 0


Query: 23  ATEPRKLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGGGGGGGLGGGSGFGSGGGGG 82
           A+EPR+LVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGGGGGGGLGGGSGFGSGGGGG
Sbjct: 20  ASEPRRLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGGGGGGGLGGGSGFGSGGGGG 79

Query: 83  FGSGIGGLGSGGGGGF--GGGGGILGGGAGGGAGGGFGGGLP 123
           FGSGIGGLGSGGGGGF  GGGGGILGGGAGGG GGGFGGGLP
Sbjct: 80  FGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGGGGGFGGGLP 121

[Close]

BLAST of PI0004901 vs. ExPASy TrEMBL
Match: E5GC63 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 4.7e-24
Identity = 97/102 (95.10%), Postives = 99/102 (97.06%), Query Frame = 0


Query: 23  ATEPRKLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGGGGGGGLGGGSGFGSGGGGG 82
           A+EPR+LVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGGGGGGGLGGGSGFGSGGGGG
Sbjct: 20  ASEPRRLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGGGGGGGLGGGSGFGSGGGGG 79

Query: 83  FGSGIGGLGSGGGGGF--GGGGGILGGGAGGGAGGGFGGGLP 123
           FGSGIGGLGSGGGGGF  GGGGGILGGGAGGG GGGFGGGLP
Sbjct: 80  FGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGGGGGFGGGLP 121

[Close]

BLAST of PI0004901 vs. ExPASy TrEMBL
Match: A0A1S3BEW4 (glycine-rich cell wall structural protein OS=Cucumis melo OX=3656 GN=LOC103489125 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 4.7e-24
Identity = 97/102 (95.10%), Postives = 99/102 (97.06%), Query Frame = 0


Query: 23  ATEPRKLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGGGGGGGLGGGSGFGSGGGGG 82
           A+EPR+LVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGGGGGGGLGGGSGFGSGGGGG
Sbjct: 20  ASEPRRLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGGGGGGGLGGGSGFGSGGGGG 79

Query: 83  FGSGIGGLGSGGGGGF--GGGGGILGGGAGGGAGGGFGGGLP 123
           FGSGIGGLGSGGGGGF  GGGGGILGGGAGGG GGGFGGGLP
Sbjct: 80  FGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGGGGGFGGGLP 121

[Close]

BLAST of PI0004901 vs. ExPASy TrEMBL
Match: A0A6J1CF04 (glycine-rich protein 5-like OS=Momordica charantia OX=3673 GN=LOC111010881 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 7.8e-19
Identity = 91/106 (85.85%), Postives = 98/106 (92.45%), Query Frame = 0


Query: 23  ATEPRKLVITNGGEI----ESEKTLPFQFFPGYGGGLGGGGGFGGGGGGGLGGGSGFGSG 82
           A+EPRK ++ NGG+I    E+EKTLPFQFFPG+GGGLGGGGGFGGGGGGGLGGGSGFGSG
Sbjct: 22  ASEPRK-IVRNGGDIKNENENEKTLPFQFFPGFGGGLGGGGGFGGGGGGGLGGGSGFGSG 81

Query: 83  GGGGFGSGIGGLGSGGGGGF--GGGGGILGGGAGGGAGGGFGGGLP 123
           GGGGFGSGIGGLGSGGGGGF  GGGGGILGGGAGGG+GGGFGGGLP
Sbjct: 82  GGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGSGGGFGGGLP 126

[Close]

BLAST of PI0004901 vs. NCBI nr
Match: XP_011648421.1 (glycine-rich cell wall structural protein [Cucumis sativus] >KGN64508.1 hypothetical protein Csa_013856 [Cucumis sativus])

HSP 1 Score: 123.2 bits (308), Expect = 1.5e-24
Identity = 99/102 (97.06%), Postives = 100/102 (98.04%), Query Frame = 0


Query: 23  ATEPRKLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGGGGGGGLGGGSGFGSGGGGG 82
           A+EPRKLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGGGGGGGLGGGSGFGSGGGGG
Sbjct: 20  ASEPRKLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGGGGGGGLGGGSGFGSGGGGG 79

Query: 83  FGSGIGGLGSGGGGGF--GGGGGILGGGAGGGAGGGFGGGLP 123
           FGSGIGGLGSGGGGGF  GGGGGILGGGAGGGAGGGFGGGLP
Sbjct: 80  FGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGAGGGFGGGLP 121

[Close]

BLAST of PI0004901 vs. NCBI nr
Match: XP_008446362.1 (PREDICTED: glycine-rich cell wall structural protein [Cucumis melo] >ADN34062.1 hypothetical protein [Cucumis melo subsp. melo] >KAA0056845.1 glycine-rich cell wall structural protein [Cucumis melo var. makuwa] >TYJ99348.1 glycine-rich cell wall structural protein [Cucumis melo var. makuwa])

HSP 1 Score: 120.6 bits (301), Expect = 9.7e-24
Identity = 97/102 (95.10%), Postives = 99/102 (97.06%), Query Frame = 0


Query: 23  ATEPRKLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGGGGGGGLGGGSGFGSGGGGG 82
           A+EPR+LVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGGGGGGGLGGGSGFGSGGGGG
Sbjct: 20  ASEPRRLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGGGGGGGLGGGSGFGSGGGGG 79

Query: 83  FGSGIGGLGSGGGGGF--GGGGGILGGGAGGGAGGGFGGGLP 123
           FGSGIGGLGSGGGGGF  GGGGGILGGGAGGG GGGFGGGLP
Sbjct: 80  FGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGGGGGFGGGLP 121

[Close]

BLAST of PI0004901 vs. NCBI nr
Match: XP_038895952.1 (glycine-rich cell wall structural protein-like [Benincasa hispida])

HSP 1 Score: 116.7 bits (291), Expect = 1.4e-22
Identity = 96/104 (92.31%), Postives = 99/104 (95.19%), Query Frame = 0


Query: 23  ATEPRKLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGGGGGGGLGGGSGFGSGGGGG 82
           A+EPRKLVITNGGEIESEKTL FQFFPG+GGGLGGGGG+GGGGGGGLGGGSGFGSGGGGG
Sbjct: 20  ASEPRKLVITNGGEIESEKTLAFQFFPGFGGGLGGGGGYGGGGGGGLGGGSGFGSGGGGG 79

Query: 83  FGSGIGGLGSGGGGGF----GGGGGILGGGAGGGAGGGFGGGLP 123
           FGSGIGGLGSGGGGGF    GGGGGILGGGAGGGAGGGFGGGLP
Sbjct: 80  FGSGIGGLGSGGGGGFGGGGGGGGGILGGGAGGGAGGGFGGGLP 123

[Close]

BLAST of PI0004901 vs. NCBI nr
Match: XP_022140151.1 (glycine-rich protein 5-like [Momordica charantia])

HSP 1 Score: 103.2 bits (256), Expect = 1.6e-18
Identity = 91/106 (85.85%), Postives = 98/106 (92.45%), Query Frame = 0


Query: 23  ATEPRKLVITNGGEI----ESEKTLPFQFFPGYGGGLGGGGGFGGGGGGGLGGGSGFGSG 82
           A+EPRK ++ NGG+I    E+EKTLPFQFFPG+GGGLGGGGGFGGGGGGGLGGGSGFGSG
Sbjct: 22  ASEPRK-IVRNGGDIKNENENEKTLPFQFFPGFGGGLGGGGGFGGGGGGGLGGGSGFGSG 81

Query: 83  GGGGFGSGIGGLGSGGGGGF--GGGGGILGGGAGGGAGGGFGGGLP 123
           GGGGFGSGIGGLGSGGGGGF  GGGGGILGGGAGGG+GGGFGGGLP
Sbjct: 82  GGGGFGSGIGGLGSGGGGGFGGGGGGGILGGGAGGGSGGGFGGGLP 126

[Close]

BLAST of PI0004901 vs. NCBI nr
Match: XP_022994117.1 (glycine-rich protein 5 [Cucurbita maxima])

HSP 1 Score: 94.0 bits (232), Expect = 9.7e-16
Identity = 88/104 (84.62%), Postives = 91/104 (87.50%), Query Frame = 0


Query: 23  ATEPRKLVITNGGEIESEKTLPFQFFPGYGGGLGGGGGFGGGGGGGLGGGSGFGSGGGGG 82
           A+EPR+LV T GG   SEKT  FQFFPGYGGGLGGGGGFGGGGGGGLGGGSGFGSGGG G
Sbjct: 21  ASEPRRLVGTGGG-FGSEKTGYFQFFPGYGGGLGGGGGFGGGGGGGLGGGSGFGSGGGAG 80

Query: 83  FGSGIGGLGSGGGGGFGGGG----GILGGGAGGGAGGGFGGGLP 123
           FGSGIGGLG GGGGGFGGGG    G+LGGGAGGGAGGGFGGGLP
Sbjct: 81  FGSGIGGLGGGGGGGFGGGGGSGSGVLGGGAGGGAGGGFGGGLP 123

The following BLAST results are available for this feature:

BLAST of PI0004901 vs.


Match Name	E-value	Identity	Description

BLAST of PI0004901 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LS00	7.3e-25	97.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G062340 PE=4 SV=1	[more]
A0A5D3BMG3	4.7e-24	95.10	Glycine-rich cell wall structural protein OS=Cucumis melo var. makuwa OX=1194695...	[more]
E5GC63	4.7e-24	95.10	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A1S3BEW4	4.7e-24	95.10	glycine-rich cell wall structural protein OS=Cucumis melo OX=3656 GN=LOC10348912...	[more]
A0A6J1CF04	7.8e-19	85.85	glycine-rich protein 5-like OS=Momordica charantia OX=3673 GN=LOC111010881 PE=4 ...	[more]

BLAST of PI0004901 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011648421.1	1.5e-24	97.06	glycine-rich cell wall structural protein [Cucumis sativus] >KGN64508.1 hypothet...	[more]
XP_008446362.1	9.7e-24	95.10	PREDICTED: glycine-rich cell wall structural protein [Cucumis melo] >ADN34062.1 ...	[more]
XP_038895952.1	1.4e-22	92.31	glycine-rich cell wall structural protein-like [Benincasa hispida]	[more]
XP_022140151.1	1.6e-18	85.85	glycine-rich protein 5-like [Momordica charantia]	[more]
XP_022994117.1	9.7e-16	84.62	glycine-rich protein 5 [Cucurbita maxima]	[more]

BLAST of PI0004901 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0004901.1	PI0004901.1	mRNA