PI0004877 (gene) Melon (PI 482460) v1

Overview
NamePI0004877
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionUnknown protein
Locationchr06: 19134260 .. 19134759 (-)
RNA-Seq ExpressionPI0004877
SyntenyPI0004877
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCCCTCTTGAGGTTAGGGGAAAATTCTTGCTCGGGAAAACGTCATGGGTATATGAGAGACATGGAACCATTATACAACTAATTCAAGAATCTTCAGTTTACACAGTCTGCAAGGAGGAAGAAGAAGAAATTCCTAGTACAAGAAGAAGCAATCAAGAAATTGCGAGATATGGAGAGAAGAAATAAAATATTATTCCCAAACCTCAAACTTGAGAGACAGCAGAAGCAGCTCTGCAATTGCTGCATTTGGACATTTCTGAACCGCACTTTTATTGAAAAATGAGAATCCAAGGGGAATTTAATTTGAGATTGTGAATGAAGAGAGAAGGATTCAGCTCACCATTATTAGGGAATTGAGAAGGATGAGAGTTCCAGTTCCGATTGAAGTGCGGAACAGCGTTCTCGGTTTGGAGTTGAAGATCATAGCGACATACACCCATTTGTGTGGGCTAAATTTTTTCAGCTTTTCCCTTCCAAATGAATCACTCCCAATGTAA

mRNA sequence

ATGTTCCCTCTTGAGGTTAGGGGAAAATTCTTGCTCGGGAAAACGTCATGGGTATATGAGAGACATGGAACCATTATACAACTAATTCAAGAATCTTCAGTTTACACAGTCTGCAAGGAGGAAGAAGAAGAAATTCCTAATATGGAGAGAAGAAATAAAATATTATTCCCAAACCTCAAACTTGAGAGACAGCAGAAGCAGCTCTGCAATTGCTGCATTTGGACATTTCTGAACCAGAGAAGGATTCAGCTCACCATTATTAGGGAATTGAGAAGGATGAGAGTTCCAGTTCCGATTGAAGTGCGGAACAGCGTTCTCGGTTTGGAGTTGAAGATCATAGCGACATACACCCATTTGTGTGGGCTAAATTTTTTCAGCTTTTCCCTTCCAAATGAATCACTCCCAATGTAA

Coding sequence (CDS)

ATGTTCCCTCTTGAGGTTAGGGGAAAATTCTTGCTCGGGAAAACGTCATGGGTATATGAGAGACATGGAACCATTATACAACTAATTCAAGAATCTTCAGTTTACACAGTCTGCAAGGAGGAAGAAGAAGAAATTCCTAATATGGAGAGAAGAAATAAAATATTATTCCCAAACCTCAAACTTGAGAGACAGCAGAAGCAGCTCTGCAATTGCTGCATTTGGACATTTCTGAACCAGAGAAGGATTCAGCTCACCATTATTAGGGAATTGAGAAGGATGAGAGTTCCAGTTCCGATTGAAGTGCGGAACAGCGTTCTCGGTTTGGAGTTGAAGATCATAGCGACATACACCCATTTGTGTGGGCTAAATTTTTTCAGCTTTTCCCTTCCAAATGAATCACTCCCAATGTAA

Protein sequence

MFPLEVRGKFLLGKTSWVYERHGTIIQLIQESSVYTVCKEEEEEIPNMERRNKILFPNLKLERQQKQLCNCCIWTFLNQRRIQLTIIRELRRMRVPVPIEVRNSVLGLELKIIATYTHLCGLNFFSFSLPNESLPM
Homology
[Close]
BLAST of PI0004877 vs. ExPASy TrEMBL
Match: A0A0A0LC19 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G598930 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.2e-47
Identity = 108/151 (71.52%), Postives = 115/151 (76.16%), Query Frame = 0 

Query: 1   MFPLEVRGKFLLGKTSWVYERHGTIIQLIQESSVYTVCKEEE-EEIPNMERRNKILFPNL 60
           MFPL VRG FLLGKTSWVYERHGTIIQ IQE S Y VCKEE  +++ +MERRNK LFPNL
Sbjct: 1   MFPLGVRGIFLLGKTSWVYERHGTIIQQIQECSAYEVCKEEAIKKLGDMERRNKRLFPNL 60

Query: 61  KLERQQKQLCNCCIWTFLN--------------QRRIQLTIIRELRRMRVPVPIEVRNSV 120
           KLERQ+KQLCNCCIW +LN              +RRIQ  IIR LRRMRVPVPIEV NSV
Sbjct: 61  KLERQKKQLCNCCIWRYLNRTSIENENPRGIECERRIQFRIIRGLRRMRVPVPIEVGNSV 120

Query: 121 LGLELKIIATYTHLCGLNFFSFSLPNESLPM 137
           L LELKII  YTHLCGLN  S SLPNESL M
Sbjct: 121 LVLELKIIEIYTHLCGLNSSSLSLPNESLSM 151

[Close]
BLAST of PI0004877 vs. NCBI nr
Match: KAE8650798.1 (hypothetical protein Csa_023868, partial [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 4.9e-08
Identity = 32/44 (72.73%), Postives = 38/44 (86.36%), Query Frame = 0 

Query: 35 YTVCKEEE-EEIPNMERRNKILFPNLKLERQQKQLCNCCIWTFL 78
          Y VCKEE  +++ +MERRNK LFPNLKLERQ+KQLCNCCIW +L
Sbjct: 1  YEVCKEEAIKKLGDMERRNKRLFPNLKLERQKKQLCNCCIWRYL 44

The following BLAST results are available for this feature:
BLAST of PI0004877 vs.
Match NameE-valueIdentityDescription
BLAST of PI0004877 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LC191.2e-4771.52Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G598930 PE=4 SV=1[more]
BLAST of PI0004877 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8650798.14.9e-0872.73hypothetical protein Csa_023868, partial [Cucumis sativus][more]
BLAST of PI0004877 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0004877.1PI0004877.1mRNA