PI0004781 (gene) Melon (PI 482460) v1

Overview


Name	PI0004781
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon gag protein
Location	chr10: 1165392 .. 1167535 (+)
RNA-Seq Expression	PI0004781
Synteny	PI0004781

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATTTGTTAAAGTTGCAAAGTGCGGGGTGTGCGGTCTAGTCGGACATCCTAATGACAAGTGCCCTGACTTAGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATAGTAACACTTACAACGTCGGTTGGAGAGACAACCCTAATCTAAGATGGGGAAACGACAACCAAAGACCCTCGCAAGCAACCTCCTCTTCAAACAATCAAGGTACTAATTTGGAAGATTTAGTTAAAGCTCTTACTACTAATACTATCTCTTTTCAGAATGAAATGAAGCAACAAATGTCTCATCTAACCAATGTCATAAGCAAATTAGAAGGTAAAGGCAAACTTCCGGCTTAGCCTGATCATGCCAACGTAAGTGCCATCTCGCTTAAAAGCGGTAAATTCTGGAAACCCCTTCAAGCGAAGAAAAGGTAACTTCTACACCTATCCTTCTAGAAAATAAAGATGAGAAAAAGGAAGAAAGATTAGAAACTAGTTCTTTACCATCATCTTCTAAAGGTAAATCACATGTTTTAGATTATTCTCCATCTGTCCCTAAAGCTCCTTTTCCTTCCAGGTTAGCTCCTAAGAAGAAAGAGTCGCCCAAGGAAGAAGAATTTCTAGAGATGTTCAGAAAGGTGCAAATAAACCTATCTCTACTTGATGCAATCCAGCAAGTCCCGAGGTATGCGAAATTTCTCAAAGAGTTATGCACCAACAAGAGAAAAATCAAAGAAAAGCCGATGGTAAGTCACAACGTTTCTGCACTTCTTAAAAACTTTATACCTGAAAAAAAAACGATCCAGGTATGTTTTCTCTTCCTTGTATTATAGGCAATAGGCCAATTTCCCATGCAATGCTTGACCTAGGAGCTTCTATTAATGTCATGCCTTATTCTGTGTTTAAAGATCTAGAATTGAATAACTTGCAAAAAACAAGTGTGTGCATACAATTAGCTGATAGATCTTTTATTTCGCCGCTAGGAATAGTTGAAGATGTACTTGTTAAAGTAGATAAACTAATCTTTCCTGCGGATTTCTATATTCTAGAAATGAATGATGCATGTGCAAAACCTTCCCATTCAATTCTATTAGGAAGACCTTTTCTTAAAACTGCTAAAGCAATAATCGATGTAGACAAAGGTTGCCTAAGTGTAGAATTCGATGGAGACATTGTGACATTTAATATTTTTGAATCCATGAAATATCCTAAAGAATGTCTATCTTTATGCTCCTTAGAATTGCATGATGAATTTGATGAATTGCCTATTAATAATGAATTTGCTAAACAAGAATTAGATAAAATTGATGATGAGCTTTGTTTGCATGAGTTTGATGATGAAAAAGAGATGGTAGAAGTAGAAACGGATGAAAAATTAAATCTTGATGGGATAAATTCTAACACTTTTTTCTTTTCTCCCCAGGAAAAGGGATTGAGCTTAAGACTCTCCCTCCCAACCTGAAATACGTATTCTTAGGAGAGAAGAATACGCTTCCTGTTATCATTTCCAAAGAACTACACCAAGAAGCAGAAGAAAGACTAATCAAAGTCTTGAAGAACAAAAGAAAAACACTAGGATGGACTTTAGAAGACCTTAAAGGTATTTCCCCTTCTTTTTGCACTCATAGAATAATTTTAGAAGAAGGAGCAAAAGATAAAGTCCAGTCACAAAGAAGGTTGAACCCTGTGTTAAAAGATGTTGTTTTGAAAGAGATTTTAAAACTTAAAGATGCTGGGATTATTTACCCCGTCCCCGATAGTACATGGGTTAGTCCAATCCATGTTGTGCCTAAAAAGACGGGAATGACGGTGATAAAGAACGATAAAGGTGAGATGATCCCGACGTGAGTCCAAAACGGCTGGAGGATGTGCATCGACTACCGCAAACTCAACGAGGTAACGAAGAAAGATCACTTTTCCTTACCTTTCTTATATCAAATGATAGAACGTTTAGCTGGTAAAGTGTAGCCTTTGCCTCTAAAGTGTCCACTCTTGTCAACAACTCCTTTATAGGTAATCCGTCAAGGCGACCGGTCATCGCATCAATTGCATCAGCTTTCTCGGACACTTCCTCAATCCGACCTTCCAAGAAGCGGACGGTATCCGGAATTTCCAGCAGGTAG

mRNA sequence

ATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATTTGTTAAAGTTGCAAAGTGCGGGGTGTGCGGTCTAGTCGGACATCCTAATGACAAGTGCCCTGACTTAGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATAGTAACACTTACAACGTCGGTTGGAGAGACAACCCTAATCTAAGATGGGGAAACGACAACCAAAGACCCTCGCAAGCAACCTCCTCTTCAAACAATCAAGGTACTAATTTGGAAGATTTAGTTAAAGCTCTTACTACTAATACTATCTCTTTTCAGAATGAAATGAAGCAACAAATGTCTCATCTAACCAATGTCATAAGCAAATTAGAAGGTAATCCGTCAAGGCGACCGGTCATCGCATCAATTGCATCAGCTTTCTCGGACACTTCCTCAATCCGACCTTCCAAGAAGCGGACGGTATCCGGAATTTCCAGCAGGTAG

Coding sequence (CDS)

ATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATTTGTTAAAGTTGCAAAGTGCGGGGTGTGCGGTCTAGTCGGACATCCTAATGACAAGTGCCCTGACTTAGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATAGTAACACTTACAACGTCGGTTGGAGAGACAACCCTAATCTAAGATGGGGAAACGACAACCAAAGACCCTCGCAAGCAACCTCCTCTTCAAACAATCAAGGTACTAATTTGGAAGATTTAGTTAAAGCTCTTACTACTAATACTATCTCTTTTCAGAATGAAATGAAGCAACAAATGTCTCATCTAACCAATGTCATAAGCAAATTAGAAGGTAATCCGTCAAGGCGACCGGTCATCGCATCAATTGCATCAGCTTTCTCGGACACTTCCTCAATCCGACCTTCCAAGAAGCGGACGGTATCCGGAATTTCCAGCAGGTAG

Protein sequence

MTTLLTSFVQGGFVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTISFQNEMKQQMSHLTNVISKLEGNPSRRPVIASIASAFSDTSSIRPSKKRTVSGISSR

Homology

[Close]

BLAST of PI0004781 vs. ExPASy TrEMBL
Match: A0A5D3CRR8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00610 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 8.5e-47
Identity = 89/119 (74.79%), Postives = 106/119 (89.08%), Query Frame = 0


Query: 1   MTTLLTSFVQGGFVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNP 60
           MTTLLTSFVQG  +KV KCGVCGLVGHPNDKCP+++E+ N++RKYDPH NTYN GWRDNP
Sbjct: 142 MTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNSGWRDNP 201

Query: 61  NLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTISFQNEMKQQMSHLTNVISKLEG 120
           NLRWGNDNQ+ +QA S+S+NQGTNLED++KAL TNT+SFQ EMKQQM+ LT  ISK++G
Sbjct: 202 NLRWGNDNQKHTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDG 260

[Close]

BLAST of PI0004781 vs. ExPASy TrEMBL
Match: A0A5D3DCG3 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold860G00100 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.6e-45
Identity = 87/119 (73.11%), Postives = 105/119 (88.24%), Query Frame = 0


Query: 1   MTTLLTSFVQGGFVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNP 60
           MT LLTSFVQG  +KV KCGVCGLVGHPNDKCP+++E+ N+++KYDPH NTYN GWRDNP
Sbjct: 1   MTILLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNP 60

Query: 61  NLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTISFQNEMKQQMSHLTNVISKLEG 120
           NLRWGNDNQ+ +QA  +S+NQGTNLED++KAL TNT+SFQ EMKQQM+ LT VISK++G
Sbjct: 61  NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTVISKMDG 119

[Close]

BLAST of PI0004781 vs. ExPASy TrEMBL
Match: A0A1S4E3R2 (uncharacterized protein LOC107991910 OS=Cucumis melo OX=3656 GN=LOC107991910 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.6e-45
Identity = 87/119 (73.11%), Postives = 105/119 (88.24%), Query Frame = 0


Query: 1   MTTLLTSFVQGGFVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNP 60
           MT LLTSFVQG  +KV KCGVCGLVGHPNDKCP+++E+ N+++KYDPH NTYN GWRDNP
Sbjct: 1   MTILLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNP 60

Query: 61  NLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTISFQNEMKQQMSHLTNVISKLEG 120
           NLRWGNDNQ+ +QA  +S+NQGTNLED++KAL TNT+SFQ EMKQQM+ LT VISK++G
Sbjct: 61  NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTVISKMDG 119

[Close]

BLAST of PI0004781 vs. ExPASy TrEMBL
Match: A0A5D3CFE7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold315G00840 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 2.1e-45
Identity = 87/119 (73.11%), Postives = 104/119 (87.39%), Query Frame = 0


Query: 1   MTTLLTSFVQGGFVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNP 60
           MTTLLTSFVQG   KV KCGVCGLVGHPNDKCP+++E+ N++R+YDPH NTYN+GWRD P
Sbjct: 186 MTTLLTSFVQGTPFKVTKCGVCGLVGHPNDKCPEVIEDINIVRRYDPHGNTYNLGWRDKP 245

Query: 61  NLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTISFQNEMKQQMSHLTNVISKLEG 120
           NLRWGND Q  +QA S+S+NQGTNLED++KALTTNT+SFQ EMKQQM+ LT  ISK++G
Sbjct: 246 NLRWGNDKQNHTQAPSTSSNQGTNLEDIIKALTTNTLSFQQEMKQQMTQLTTAISKMDG 304

[Close]

BLAST of PI0004781 vs. ExPASy TrEMBL
Match: A0A1S3CQU8 (uncharacterized protein LOC103503291 OS=Cucumis melo OX=3656 GN=LOC103503291 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 2.1e-45
Identity = 86/119 (72.27%), Postives = 106/119 (89.08%), Query Frame = 0


Query: 1   MTTLLTSFVQGGFVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNP 60
           MTTLLTSFVQG  +KV KCGVCGLVG+PNDKCP ++E+ N++R+YDPH NTYN+GWRDNP
Sbjct: 56  MTTLLTSFVQGTALKVTKCGVCGLVGYPNDKCPKVIEDVNIVRRYDPHGNTYNLGWRDNP 115

Query: 61  NLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTISFQNEMKQQMSHLTNVISKLEG 120
           NLRWGNDNQ+ +QA  +S+NQGTNLED++KAL TNT+SFQ +MKQQM+ LT VISK++G
Sbjct: 116 NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQKMKQQMTQLTTVISKMDG 174

[Close]

BLAST of PI0004781 vs. NCBI nr
Match: KAA0047407.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 196.4 bits (498), Expect = 1.8e-46
Identity = 89/119 (74.79%), Postives = 106/119 (89.08%), Query Frame = 0


Query: 1   MTTLLTSFVQGGFVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNP 60
           MTTLLTSFVQG  +KV KCGVCGLVGHPNDKCP+++E+ N++RKYDPH NTYN GWRDNP
Sbjct: 142 MTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNSGWRDNP 201

Query: 61  NLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTISFQNEMKQQMSHLTNVISKLEG 120
           NLRWGNDNQ+ +QA S+S+NQGTNLED++KAL TNT+SFQ EMKQQM+ LT  ISK++G
Sbjct: 202 NLRWGNDNQKHTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDG 260

[Close]

BLAST of PI0004781 vs. NCBI nr
Match: XP_016902871.1 (PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo])

HSP 1 Score: 192.2 bits (487), Expect = 3.3e-45
Identity = 87/119 (73.11%), Postives = 105/119 (88.24%), Query Frame = 0


Query: 1   MTTLLTSFVQGGFVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNP 60
           MT LLTSFVQG  +KV KCGVCGLVGHPNDKCP+++E+ N+++KYDPH NTYN GWRDNP
Sbjct: 1   MTILLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNP 60

Query: 61  NLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTISFQNEMKQQMSHLTNVISKLEG 120
           NLRWGNDNQ+ +QA  +S+NQGTNLED++KAL TNT+SFQ EMKQQM+ LT VISK++G
Sbjct: 61  NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTVISKMDG 119

[Close]

BLAST of PI0004781 vs. NCBI nr
Match: KAA0051761.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK21361.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 192.2 bits (487), Expect = 3.3e-45
Identity = 87/119 (73.11%), Postives = 105/119 (88.24%), Query Frame = 0


Query: 1   MTTLLTSFVQGGFVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNP 60
           MT LLTSFVQG  +KV KCGVCGLVGHPNDKCP+++E+ N+++KYDPH NTYN GWRDNP
Sbjct: 1   MTILLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNP 60

Query: 61  NLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTISFQNEMKQQMSHLTNVISKLEG 120
           NLRWGNDNQ+ +QA  +S+NQGTNLED++KAL TNT+SFQ EMKQQM+ LT VISK++G
Sbjct: 61  NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTVISKMDG 119

[Close]

BLAST of PI0004781 vs. NCBI nr
Match: XP_008465649.1 (PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo])

HSP 1 Score: 191.8 bits (486), Expect = 4.3e-45
Identity = 86/119 (72.27%), Postives = 106/119 (89.08%), Query Frame = 0


Query: 1   MTTLLTSFVQGGFVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNP 60
           MTTLLTSFVQG  +KV KCGVCGLVG+PNDKCP ++E+ N++R+YDPH NTYN+GWRDNP
Sbjct: 56  MTTLLTSFVQGTALKVTKCGVCGLVGYPNDKCPKVIEDVNIVRRYDPHGNTYNLGWRDNP 115

Query: 61  NLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTISFQNEMKQQMSHLTNVISKLEG 120
           NLRWGNDNQ+ +QA  +S+NQGTNLED++KAL TNT+SFQ +MKQQM+ LT VISK++G
Sbjct: 116 NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQKMKQQMTQLTTVISKMDG 174

[Close]

BLAST of PI0004781 vs. NCBI nr
Match: TYK10613.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 191.8 bits (486), Expect = 4.3e-45
Identity = 87/119 (73.11%), Postives = 104/119 (87.39%), Query Frame = 0


Query: 1   MTTLLTSFVQGGFVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNP 60
           MTTLLTSFVQG   KV KCGVCGLVGHPNDKCP+++E+ N++R+YDPH NTYN+GWRD P
Sbjct: 186 MTTLLTSFVQGTPFKVTKCGVCGLVGHPNDKCPEVIEDINIVRRYDPHGNTYNLGWRDKP 245

Query: 61  NLRWGNDNQRPSQATSSSNNQGTNLEDLVKALTTNTISFQNEMKQQMSHLTNVISKLEG 120
           NLRWGND Q  +QA S+S+NQGTNLED++KALTTNT+SFQ EMKQQM+ LT  ISK++G
Sbjct: 246 NLRWGNDKQNHTQAPSTSSNQGTNLEDIIKALTTNTLSFQQEMKQQMTQLTTAISKMDG 304

The following BLAST results are available for this feature:

BLAST of PI0004781 vs.


Match Name	E-value	Identity	Description

BLAST of PI0004781 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CRR8	8.5e-47	74.79	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3DCG3	1.6e-45	73.11	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S4E3R2	1.6e-45	73.11	uncharacterized protein LOC107991910 OS=Cucumis melo OX=3656 GN=LOC107991910 PE=...	[more]
A0A5D3CFE7	2.1e-45	73.11	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3CQU8	2.1e-45	72.27	uncharacterized protein LOC103503291 OS=Cucumis melo OX=3656 GN=LOC103503291 PE=...	[more]

BLAST of PI0004781 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047407.1	1.8e-46	74.79	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotranspos...	[more]
XP_016902871.1	3.3e-45	73.11	PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]	[more]
KAA0051761.1	3.3e-45	73.11	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK21361.1 retrotranspos...	[more]
XP_008465649.1	4.3e-45	72.27	PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo]	[more]
TYK10613.1	4.3e-45	73.11	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0004781 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 100..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0004781.1	PI0004781.1	mRNA