PI0004642 (gene) Melon (PI 482460) v1

Overview


Name	PI0004642
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr11: 9701346 .. 9701549 (-)
RNA-Seq Expression	PI0004642
Synteny	PI0004642

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGTGTTGTCTTCTACATAATCTTATCAATAGAGAGATGACTAACAATGGTATGAACGACGATCTGGACGAGGGTGATTCAACTCACGCTACTACGGAAGGTGACGATATTAGTTACATTGAGACATCAAATGAATGGAGTCAATGGAGGGATCAATTGGCTAAGACGATGTTTAGTGATTGGGAGTTACGTAACCAGTAG

mRNA sequence

ATGACGTGTTGTCTTCTACATAATCTTATCAATAGAGAGATGACTAACAATGGTATGAACGACGATCTGGACGAGGGTGATTCAACTCACGCTACTACGGAAGGTGACGATATTAGTTACATTGAGACATCAAATGAATGGAGTCAATGGAGGGATCAATTGGCTAAGACGATGTTTAGTGATTGGGAGTTACGTAACCAGTAG

Coding sequence (CDS)

ATGACGTGTTGTCTTCTACATAATCTTATCAATAGAGAGATGACTAACAATGGTATGAACGACGATCTGGACGAGGGTGATTCAACTCACGCTACTACGGAAGGTGACGATATTAGTTACATTGAGACATCAAATGAATGGAGTCAATGGAGGGATCAATTGGCTAAGACGATGTTTAGTGATTGGGAGTTACGTAACCAGTAG

Protein sequence

MTCCLLHNLINREMTNNGMNDDLDEGDSTHATTEGDDISYIETSNEWSQWRDQLAKTMFSDWELRNQ

Homology

[Close]

BLAST of PI0004642 vs. ExPASy TrEMBL
Match: A0A5D3DG22 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold523G00290 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 7.0e-22
Identity = 53/67 (79.10%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 1   MTCCLLHNLINREMTNNGMNDDLDEGDSTHATTEGDDISYIETSNEWSQWRDQLAKTMFS 60
           M CCLLHNLINREMTN+ + DDLDEGDST+ATT GD+I+YIE SNEWS+WRDQLA TMFS
Sbjct: 258 MACCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEASNEWSEWRDQLAHTMFS 317

Query: 61  DWELRNQ 68
           DWEL+ Q
Sbjct: 318 DWELQWQ 324

[Close]

BLAST of PI0004642 vs. ExPASy TrEMBL
Match: A0A5D3BL48 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00970 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.6e-21
Identity = 52/67 (77.61%), Postives = 57/67 (85.07%), Query Frame = 0


Query: 1   MTCCLLHNLINREMTNNGMNDDLDEGDSTHATTEGDDISYIETSNEWSQWRDQLAKTMFS 60
           + CCLLHNLINREMTN  + D++DE DSTHATT  DDI YIETSNEWSQWRD LA+ MFS
Sbjct: 148 LACCLLHNLINREMTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFS 207

Query: 61  DWELRNQ 68
           DWELRNQ
Sbjct: 208 DWELRNQ 214

[Close]

BLAST of PI0004642 vs. ExPASy TrEMBL
Match: A0A5A7VJX3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold40G001490 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.6e-21
Identity = 52/67 (77.61%), Postives = 57/67 (85.07%), Query Frame = 0


Query: 1   MTCCLLHNLINREMTNNGMNDDLDEGDSTHATTEGDDISYIETSNEWSQWRDQLAKTMFS 60
           + CCLLHNLINREMTN  + D++DE DSTHATT  DDI YIETSNEWSQWRD LA+ MFS
Sbjct: 241 LACCLLHNLINREMTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFS 300

Query: 61  DWELRNQ 68
           DWELRNQ
Sbjct: 301 DWELRNQ 307

[Close]

BLAST of PI0004642 vs. ExPASy TrEMBL
Match: A0A5A7V6M3 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold178G00030 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.7e-21
Identity = 52/67 (77.61%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 1   MTCCLLHNLINREMTNNGMNDDLDEGDSTHATTEGDDISYIETSNEWSQWRDQLAKTMFS 60
           M CCLLHNLINREMTN+ + DDLDE DST+ATT GD+I+YIE SNEWS+WRDQLA TMFS
Sbjct: 180 MACCLLHNLINREMTNSEIIDDLDEADSTYATTGGDEINYIEASNEWSEWRDQLAHTMFS 239

Query: 61  DWELRNQ 68
           DWEL +Q
Sbjct: 240 DWELCDQ 246

[Close]

BLAST of PI0004642 vs. ExPASy TrEMBL
Match: A0A5A7TJS2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold335G00710 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.7e-21
Identity = 53/67 (79.10%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 1   MTCCLLHNLINREMTNNGMNDDLDEGDSTHATTEGDDISYIETSNEWSQWRDQLAKTMFS 60
           M CCLLHNLINREMTN+ + DDLDEGDST+ATT GD+I+YIE SNEWS+ RDQLA TMFS
Sbjct: 105 MACCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEVSNEWSELRDQLAYTMFS 164

Query: 61  DWELRNQ 68
           DWELR+Q
Sbjct: 165 DWELRDQ 171

[Close]

BLAST of PI0004642 vs. NCBI nr
Match: KAA0062747.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22546.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 112.5 bits (280), Expect = 1.5e-21
Identity = 53/67 (79.10%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 1   MTCCLLHNLINREMTNNGMNDDLDEGDSTHATTEGDDISYIETSNEWSQWRDQLAKTMFS 60
           M CCLLHNLINREMTN+ + DDLDEGDST+ATT GD+I+YIE SNEWS+WRDQLA TMFS
Sbjct: 258 MACCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEASNEWSEWRDQLAHTMFS 317

Query: 61  DWELRNQ 68
           DWEL+ Q
Sbjct: 318 DWELQWQ 324

[Close]

BLAST of PI0004642 vs. NCBI nr
Match: KAA0067470.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 111.3 bits (277), Expect = 3.2e-21
Identity = 52/67 (77.61%), Postives = 57/67 (85.07%), Query Frame = 0


Query: 1   MTCCLLHNLINREMTNNGMNDDLDEGDSTHATTEGDDISYIETSNEWSQWRDQLAKTMFS 60
           + CCLLHNLINREMTN  + D++DE DSTHATT  DDI YIETSNEWSQWRD LA+ MFS
Sbjct: 241 LACCLLHNLINREMTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFS 300

Query: 61  DWELRNQ 68
           DWELRNQ
Sbjct: 301 DWELRNQ 307

[Close]

BLAST of PI0004642 vs. NCBI nr
Match: TYJ99699.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 111.3 bits (277), Expect = 3.2e-21
Identity = 52/67 (77.61%), Postives = 57/67 (85.07%), Query Frame = 0


Query: 1   MTCCLLHNLINREMTNNGMNDDLDEGDSTHATTEGDDISYIETSNEWSQWRDQLAKTMFS 60
           + CCLLHNLINREMTN  + D++DE DSTHATT  DDI YIETSNEWSQWRD LA+ MFS
Sbjct: 148 LACCLLHNLINREMTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFS 207

Query: 61  DWELRNQ 68
           DWELRNQ
Sbjct: 208 DWELRNQ 214

[Close]

BLAST of PI0004642 vs. NCBI nr
Match: KAA0063753.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK05505.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 110.5 bits (275), Expect = 5.5e-21
Identity = 52/67 (77.61%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 1   MTCCLLHNLINREMTNNGMNDDLDEGDSTHATTEGDDISYIETSNEWSQWRDQLAKTMFS 60
           M CCLLHNLINREMTN+ + DDLDE DST+ATT GD+I+YIE SNEWS+WRDQLA TMFS
Sbjct: 180 MACCLLHNLINREMTNSEIIDDLDEADSTYATTGGDEINYIEASNEWSEWRDQLAHTMFS 239

Query: 61  DWELRNQ 68
           DWEL +Q
Sbjct: 240 DWELCDQ 246

[Close]

BLAST of PI0004642 vs. NCBI nr
Match: XP_008441953.1 (PREDICTED: uncharacterized protein LOC103485952 [Cucumis melo] >KAA0047737.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 110.5 bits (275), Expect = 5.5e-21
Identity = 53/67 (79.10%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 1   MTCCLLHNLINREMTNNGMNDDLDEGDSTHATTEGDDISYIETSNEWSQWRDQLAKTMFS 60
           M CCLLHNLI REMTNN + DDLDEGDST+ATT GD+I+YIE SNEWS+ RDQLA TMFS
Sbjct: 182 MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 241

Query: 61  DWELRNQ 68
           DWELR+Q
Sbjct: 242 DWELRDQ 248

The following BLAST results are available for this feature:

BLAST of PI0004642 vs.


Match Name	E-value	Identity	Description

BLAST of PI0004642 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DG22	7.0e-22	79.10	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BL48	1.6e-21	77.61	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7VJX3	1.6e-21	77.61	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7V6M3	2.7e-21	77.61	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7TJS2	2.7e-21	79.10	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of PI0004642 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062747.1	1.5e-21	79.10	retrotransposon protein [Cucumis melo var. makuwa] >TYK22546.1 retrotransposon p...	[more]
KAA0067470.1	3.2e-21	77.61	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYJ99699.1	3.2e-21	77.61	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]
KAA0063753.1	5.5e-21	77.61	putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK05505.1 putative nucleas...	[more]
XP_008441953.1	5.5e-21	79.10	PREDICTED: uncharacterized protein LOC103485952 [Cucumis melo] >KAA0047737.1 put...	[more]

BLAST of PI0004642 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..35

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0004642.1	PI0004642.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding