PI0004603 (gene) Melon (PI 482460) v1

Overview


Name	PI0004603
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr06: 13599387 .. 13600167 (+)
RNA-Seq Expression	PI0004603
Synteny	PI0004603

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCAGTGCGAGGCAGAGGAAGAGTAAGCTCTACCTCTTCAAAGGGCAGTCGCCCATCTTCTTCACAAAATCCTGCACCCTTACCTATGAGTGCAGATCAATATGCAATGGATTTGAGGTTTACTACGGTAACCCGATCTAAAGCAAGATCGTCCGGCATACGGATTGAATCTCCCACGGAGTCTTCCACTCCACCTAGGCCTTCGGCCAACCTTGTCCGTCCTTCTGGCGGAATAACCCAAATGAGGCCTCCTGCCTCTCCTTTGTCAAATTTGGAGTCATCAACTCCACCCACAACATACTCTCAGGCCGTTGCACCAGAAAAACGGTTCATACCAAGGCCCGAGATCAAAACTTATTTTCAAAAGCAAGTGGTAATCTATGATCCTATCATAGAACCAGAATATCAAAGTCTCACTATCGATGAGACAGTTTCAAAAATTTTCCCTGAGGGCTTTAATTTCCTTCCTGAAGACCTCAGAAAAACAAGGAAATTTTACGAGTTTATTCTAGTAGACACAAAGTCTGTAGAAATAACTCACGTGCCCGATAAAAACGATGCTTCAAAAATCGCTTATTCAAAATTAAAAATTTTCAAAGCGATAAATCCAACCCATTGGAACCAAGGAATTTTTACAGAAAAATCCTTTTCAAAACCTTTCGTACCTCAATCCTACTCTTACCAGGATTACATCAAAGCTTGGTTTAGAGTTGTTTGGTATTCTAGCAGAAACCATTCATGGTTTATTTCTTTCTGCCAGAACGCCTACAAGATAA

mRNA sequence

ATGAGTTCAGTGCGAGGCAGAGGAAGAGTAAGCTCTACCTCTTCAAAGGGCAGTCGCCCATCTTCTTCACAAAATCCTGCACCCTTACCTATGAGTGCAGATCAATATGCAATGGATTTGAGGTTTACTACGGTAACCCGATCTAAAGCAAGATCGTCCGGCATACGGATTGAATCTCCCACGGAGTCTTCCACTCCACCTAGGCCTTCGGCCAACCTTGTCCGTCCTTCTGGCGGAATAACCCAAATGAGGCCTCCTGCCTCTCCTTTGTCAAATTTGGAGTCATCAACTCCACCCACAACATACTCTCAGGCCGTTGCACCAGAAAAACGGTTCATACCAAGGCCCGAGATCAAAACTTATTTTCAAAAGCAAGTGGTAATCTATGATCCTATCATAGAACCAGAATATCAAAGTCTCACTATCGATGAGACAGTTTCAAAAATTTTCCCTGAGGGCTTTAATTTCCTTCCTGAAGACCTCAGAAAAACAAGGAAATTTTACGAGTTTATTCTAGTAGACACAAAGATTACATCAAAGCTTGGTTTAGAGTTGTTTGGTATTCTAGCAGAAACCATTCATGGTTTATTTCTTTCTGCCAGAACGCCTACAAGATAA

Coding sequence (CDS)

ATGAGTTCAGTGCGAGGCAGAGGAAGAGTAAGCTCTACCTCTTCAAAGGGCAGTCGCCCATCTTCTTCACAAAATCCTGCACCCTTACCTATGAGTGCAGATCAATATGCAATGGATTTGAGGTTTACTACGGTAACCCGATCTAAAGCAAGATCGTCCGGCATACGGATTGAATCTCCCACGGAGTCTTCCACTCCACCTAGGCCTTCGGCCAACCTTGTCCGTCCTTCTGGCGGAATAACCCAAATGAGGCCTCCTGCCTCTCCTTTGTCAAATTTGGAGTCATCAACTCCACCCACAACATACTCTCAGGCCGTTGCACCAGAAAAACGGTTCATACCAAGGCCCGAGATCAAAACTTATTTTCAAAAGCAAGTGGTAATCTATGATCCTATCATAGAACCAGAATATCAAAGTCTCACTATCGATGAGACAGTTTCAAAAATTTTCCCTGAGGGCTTTAATTTCCTTCCTGAAGACCTCAGAAAAACAAGGAAATTTTACGAGTTTATTCTAGTAGACACAAAGATTACATCAAAGCTTGGTTTAGAGTTGTTTGGTATTCTAGCAGAAACCATTCATGGTTTATTTCTTTCTGCCAGAACGCCTACAAGATAA

Protein sequence

MSSVRGRGRVSSTSSKGSRPSSSQNPAPLPMSADQYAMDLRFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTRKFYEFILVDTKITSKLGLELFGILAETIHGLFLSARTPTR

Homology

[Close]

BLAST of PI0004603 vs. ExPASy TrEMBL
Match: A0A5A7TM80 (Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold592G00220 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 1.4e-65
Identity = 139/178 (78.09%), Postives = 152/178 (85.39%), Query Frame = 0


Query: 1   MSSVRG--RGRVSSTSSKGSRPSSSQNPAPLPMSADQYAMDLRFTTVTRSKARSSGIRIE 60
           MSS +G  RGR +STSSKG+RP SS N AP P+SADQYAMDL FTTVTR  +RS GI I 
Sbjct: 1   MSSDKGSARGRTNSTSSKGNRPPSSSNSAPSPLSADQYAMDLGFTTVTRFISRSFGIWIG 60

Query: 61  SPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAVAPEKRFIPRPEI 120
           SPTESSTPPRPS NL+RPS G+ QMRPPASP SN ESSTPPTTYSQAV P+KRF+PRPEI
Sbjct: 61  SPTESSTPPRPSTNLIRPSSGVVQMRPPASPSSNRESSTPPTTYSQAVTPDKRFVPRPEI 120

Query: 121 KTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTRKFYEFILVDTK 177
           K+YFQK +V+YDPIIE EYQSLT +ETVSKIFPE FNFL EDLRKTRKFYEFIL DTK
Sbjct: 121 KSYFQKPIVVYDPIIELEYQSLTSEETVSKIFPEDFNFLLEDLRKTRKFYEFILADTK 178

[Close]

BLAST of PI0004603 vs. ExPASy TrEMBL
Match: E5GCE6 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 6.4e-58
Identity = 124/167 (74.25%), Postives = 140/167 (83.83%), Query Frame = 0


Query: 1   MSSVRG--RGRVSSTSSKGSRPSSSQNPAPLPMSADQYAMDLRFTTVTRSKARSSGIRIE 60
           MSS +G  RGR +STSSKG RPSSS N  P PMSA QY MDL FT VTRS++R S I I 
Sbjct: 1   MSSEKGSARGRTNSTSSKGHRPSSSSNSEPSPMSAYQYTMDLGFTIVTRSRSRLSSIWIG 60

Query: 61  SPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAVAPEKRFIPRPEI 120
           SPTESSTPPRPS NL+RPSGG+ QMRPPASP SN ESSTPPTTYSQAV  +KRF+PRPEI
Sbjct: 61  SPTESSTPPRPSVNLIRPSGGVIQMRPPASPSSNRESSTPPTTYSQAVTLDKRFVPRPEI 120

Query: 121 KTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTR 166
           K+YFQK +V+YDPIIEPEYQSLT++E VSKIFP+ FNFLPEDL+K +
Sbjct: 121 KSYFQKSIVVYDPIIEPEYQSLTLEEMVSKIFPKDFNFLPEDLKKKK 167

[Close]

BLAST of PI0004603 vs. ExPASy TrEMBL
Match: A0A5D3E4J4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343G00750 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 9.3e-57
Identity = 123/165 (74.55%), Postives = 139/165 (84.24%), Query Frame = 0


Query: 1   MSSVRG--RGRVSSTSSKGSRPSSSQNPAPLPMSADQYAMDLRFTTVTRSKARSSGIRIE 60
           MSS +G  RGR +STSSKG+R SSS N AP PMSADQYAMDL FT VTRS++R SGI I 
Sbjct: 1   MSSKKGNARGRTNSTSSKGNRLSSSSNSAPSPMSADQYAMDLGFTIVTRSRSRLSGIGIG 60

Query: 61  SPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAVAPEKRFIPRPEI 120
            PTESSTPPRPSANL+RP G + QM+PPASP SN +SSTPPTTYSQAV P+KRF+PRP+I
Sbjct: 61  FPTESSTPPRPSANLIRPFGRVVQMKPPASPSSNRKSSTPPTTYSQAVTPDKRFVPRPKI 120

Query: 121 KTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRK 164
           K YFQK +V+YDP IE EYQSLT++E VSKIFPE FNFLPEDLRK
Sbjct: 121 KFYFQKSIVVYDPTIELEYQSLTLEEAVSKIFPEDFNFLPEDLRK 165

[Close]

BLAST of PI0004603 vs. ExPASy TrEMBL
Match: A0A5D3BM67 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G00180 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 2.4e-52
Identity = 108/137 (78.83%), Postives = 121/137 (88.32%), Query Frame = 0


Query: 31  MSADQYAMDLRFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPL 90
           MSADQYAMDL FTTVTRS++RSS IRIES TESSTPPRPSANL+RP GG  QMRPPASP 
Sbjct: 1   MSADQYAMDLGFTTVTRSRSRSSSIRIESSTESSTPPRPSANLIRPFGGAVQMRPPASPS 60

Query: 91  SNLESSTPPTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIF 150
           SN ESSTPPTTYSQ V P+KRF+PRPEIK+YFQK +V+YD IIEPEYQS+T+++TVSKIF
Sbjct: 61  SNRESSTPPTTYSQTVTPDKRFVPRPEIKSYFQKSIVVYDLIIEPEYQSITLEKTVSKIF 120

Query: 151 PEGFNFLPEDLRKTRKF 168
            + FN LPEDLRKTR F
Sbjct: 121 LDNFNLLPEDLRKTRNF 137

[Close]

BLAST of PI0004603 vs. ExPASy TrEMBL
Match: A0A5A7UFZ9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1248G00100 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 3.3e-46
Identity = 110/155 (70.97%), Postives = 125/155 (80.65%), Query Frame = 0


Query: 1   MSSVRG--RGRVSSTSSKGSRPSSSQNPAPLPMSADQYAMDLRFTTVTRSKARSSGIRIE 60
           MSS +G  RGR +STSSKG+RPSSS N AP PMS DQYAM L FTT+T+SK+RSSGIRI 
Sbjct: 1   MSSKKGSARGRTNSTSSKGNRPSSSSNFAPSPMSVDQYAMHLGFTTLTQSKSRSSGIRIG 60

Query: 61  SPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAVAPEKRFIPRPEI 120
           SPTES TPPRP ANL+RPSG + QMR P SPLSN ESSTPPTTYSQAV P+KRF+PR EI
Sbjct: 61  SPTESLTPPRPLANLIRPSGKVVQMRFPTSPLSNRESSTPPTTYSQAVTPDKRFVPRLEI 120

Query: 121 KTYFQKQVVIYDPIIEPEYQ-SLTIDETVSKIFPE 153
           K+YFQK  V+YDPIIEP YQ S +I E   ++ PE
Sbjct: 121 KSYFQKPTVVYDPIIEPGYQTSSSIQEDEEQVDPE 155

[Close]

BLAST of PI0004603 vs. NCBI nr
Match: KAA0043136.1 (putative Retrotransposon protein [Cucumis melo var. makuwa] >TYK23922.1 putative Retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 259.2 bits (661), Expect = 2.9e-65
Identity = 139/178 (78.09%), Postives = 152/178 (85.39%), Query Frame = 0


Query: 1   MSSVRG--RGRVSSTSSKGSRPSSSQNPAPLPMSADQYAMDLRFTTVTRSKARSSGIRIE 60
           MSS +G  RGR +STSSKG+RP SS N AP P+SADQYAMDL FTTVTR  +RS GI I 
Sbjct: 1   MSSDKGSARGRTNSTSSKGNRPPSSSNSAPSPLSADQYAMDLGFTTVTRFISRSFGIWIG 60

Query: 61  SPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAVAPEKRFIPRPEI 120
           SPTESSTPPRPS NL+RPS G+ QMRPPASP SN ESSTPPTTYSQAV P+KRF+PRPEI
Sbjct: 61  SPTESSTPPRPSTNLIRPSSGVVQMRPPASPSSNRESSTPPTTYSQAVTPDKRFVPRPEI 120

Query: 121 KTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTRKFYEFILVDTK 177
           K+YFQK +V+YDPIIE EYQSLT +ETVSKIFPE FNFL EDLRKTRKFYEFIL DTK
Sbjct: 121 KSYFQKPIVVYDPIIELEYQSLTSEETVSKIFPEDFNFLLEDLRKTRKFYEFILADTK 178

[Close]

BLAST of PI0004603 vs. NCBI nr
Match: ADN34145.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 233.8 bits (595), Expect = 1.3e-57
Identity = 124/167 (74.25%), Postives = 140/167 (83.83%), Query Frame = 0


Query: 1   MSSVRG--RGRVSSTSSKGSRPSSSQNPAPLPMSADQYAMDLRFTTVTRSKARSSGIRIE 60
           MSS +G  RGR +STSSKG RPSSS N  P PMSA QY MDL FT VTRS++R S I I 
Sbjct: 1   MSSEKGSARGRTNSTSSKGHRPSSSSNSEPSPMSAYQYTMDLGFTIVTRSRSRLSSIWIG 60

Query: 61  SPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAVAPEKRFIPRPEI 120
           SPTESSTPPRPS NL+RPSGG+ QMRPPASP SN ESSTPPTTYSQAV  +KRF+PRPEI
Sbjct: 61  SPTESSTPPRPSVNLIRPSGGVIQMRPPASPSSNRESSTPPTTYSQAVTLDKRFVPRPEI 120

Query: 121 KTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTR 166
           K+YFQK +V+YDPIIEPEYQSLT++E VSKIFP+ FNFLPEDL+K +
Sbjct: 121 KSYFQKSIVVYDPIIEPEYQSLTLEEMVSKIFPKDFNFLPEDLKKKK 167

[Close]

BLAST of PI0004603 vs. NCBI nr
Match: KAA0026217.1 (hypothetical protein E6C27_scaffold19G001920 [Cucumis melo var. makuwa] >TYK30739.1 hypothetical protein E5676_scaffold343G00750 [Cucumis melo var. makuwa])

HSP 1 Score: 229.9 bits (585), Expect = 1.9e-56
Identity = 123/165 (74.55%), Postives = 139/165 (84.24%), Query Frame = 0


Query: 1   MSSVRG--RGRVSSTSSKGSRPSSSQNPAPLPMSADQYAMDLRFTTVTRSKARSSGIRIE 60
           MSS +G  RGR +STSSKG+R SSS N AP PMSADQYAMDL FT VTRS++R SGI I 
Sbjct: 1   MSSKKGNARGRTNSTSSKGNRLSSSSNSAPSPMSADQYAMDLGFTIVTRSRSRLSGIGIG 60

Query: 61  SPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAVAPEKRFIPRPEI 120
            PTESSTPPRPSANL+RP G + QM+PPASP SN +SSTPPTTYSQAV P+KRF+PRP+I
Sbjct: 61  FPTESSTPPRPSANLIRPFGRVVQMKPPASPSSNRKSSTPPTTYSQAVTPDKRFVPRPKI 120

Query: 121 KTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRK 164
           K YFQK +V+YDP IE EYQSLT++E VSKIFPE FNFLPEDLRK
Sbjct: 121 KFYFQKSIVVYDPTIELEYQSLTLEEAVSKIFPEDFNFLPEDLRK 165

[Close]

BLAST of PI0004603 vs. NCBI nr
Match: KAE8646253.1 (hypothetical protein Csa_023844, partial [Cucumis sativus])

HSP 1 Score: 225.7 bits (574), Expect = 3.6e-55
Identity = 116/153 (75.82%), Postives = 134/153 (87.58%), Query Frame = 0


Query: 9   RVSSTSSKGSRPSSSQNPAPLPMSADQYAMDLRFTTVTRSKARSSGIRIESPTESSTPPR 68
           R +STSS+G+RPSSS N AP PMSADQYAMDL FTTVTRS+ARSS I+I SPT+SSTPPR
Sbjct: 1   RANSTSSRGNRPSSSSNSAPSPMSADQYAMDLGFTTVTRSRARSSRIQIGSPTKSSTPPR 60

Query: 69  PSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAVAPEKRFIPRPEIKTYFQKQVVI 128
            SANL+RPS  + QMRP ASPLSN ESSTPPTTYSQ + P+KRF+PR EIK+YFQK V++
Sbjct: 61  TSANLIRPSSEVVQMRPLASPLSNRESSTPPTTYSQVITPDKRFVPRLEIKSYFQKPVIV 120

Query: 129 YDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDL 162
           YD IIEPEYQSLT++ETVSKIFP+ FNFLP+DL
Sbjct: 121 YDSIIEPEYQSLTLEETVSKIFPDNFNFLPDDL 153

[Close]

BLAST of PI0004603 vs. NCBI nr
Match: KAA0066421.1 (hypothetical protein E6C27_scaffold21G005030 [Cucumis melo var. makuwa] >TYK00863.1 hypothetical protein E5676_scaffold602G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 215.3 bits (547), Expect = 4.9e-52
Identity = 108/137 (78.83%), Postives = 121/137 (88.32%), Query Frame = 0


Query: 31  MSADQYAMDLRFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPL 90
           MSADQYAMDL FTTVTRS++RSS IRIES TESSTPPRPSANL+RP GG  QMRPPASP 
Sbjct: 1   MSADQYAMDLGFTTVTRSRSRSSSIRIESSTESSTPPRPSANLIRPFGGAVQMRPPASPS 60

Query: 91  SNLESSTPPTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIF 150
           SN ESSTPPTTYSQ V P+KRF+PRPEIK+YFQK +V+YD IIEPEYQS+T+++TVSKIF
Sbjct: 61  SNRESSTPPTTYSQTVTPDKRFVPRPEIKSYFQKSIVVYDLIIEPEYQSITLEKTVSKIF 120

Query: 151 PEGFNFLPEDLRKTRKF 168
            + FN LPEDLRKTR F
Sbjct: 121 LDNFNLLPEDLRKTRNF 137

The following BLAST results are available for this feature:

BLAST of PI0004603 vs.


Match Name	E-value	Identity	Description

BLAST of PI0004603 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TM80	1.4e-65	78.09	Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
E5GCE6	6.4e-58	74.25	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A5D3E4J4	9.3e-57	74.55	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BM67	2.4e-52	78.83	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UFZ9	3.3e-46	70.97	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of PI0004603 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0043136.1	2.9e-65	78.09	putative Retrotransposon protein [Cucumis melo var. makuwa] >TYK23922.1 putative...	[more]
ADN34145.1	1.3e-57	74.25	hypothetical protein [Cucumis melo subsp. melo]	[more]
KAA0026217.1	1.9e-56	74.55	hypothetical protein E6C27_scaffold19G001920 [Cucumis melo var. makuwa] >TYK3073...	[more]
KAE8646253.1	3.6e-55	75.82	hypothetical protein Csa_023844, partial [Cucumis sativus]	[more]
KAA0066421.1	4.9e-52	78.83	hypothetical protein E6C27_scaffold21G005030 [Cucumis melo var. makuwa] >TYK0086...	[more]

BLAST of PI0004603 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0004603.1	PI0004603.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding