PI0004560 (gene) Melon (PI 482460) v1

Overview


Name	PI0004560
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr08: 12656605 .. 12656934 (-)
RNA-Seq Expression	PI0004560
Synteny	PI0004560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTTTAAGGTGTTTTCCTTTACTTTTCATATACTTGTTCTTCTTCATCATGTCTTCTCCTGCAACCTTGATGGCAACTTCAAGAAACATCCTCCCTTTAGAACCCACGACATTGACTAATAAGGCATTACCCTTCATTCAACGATCATCTCGACACCTAACTACAACTACAACTCCTACTTCTCGTCACTCTGACTCTCTTAAACTTTCTAAAGAAAAGCAAGAACAAACGTCGACGGTGACTCATTCAACCCTTCAAAGTTGCAAGCCAAAAGGACCTGTTAGATGGTCTTCTCCTAGTCCAATACGTAATAATGTGAAATGCTAA

mRNA sequence

ATGACTTTAAGGTGTTTTCCTTTACTTTTCATATACTTGTTCTTCTTCATCATGTCTTCTCCTGCAACCTTGATGGCAACTTCAAGAAACATCCTCCCTTTAGAACCCACGACATTGACTAATAAGGCATTACCCTTCATTCAACGATCATCTCGACACCTAACTACAACTACAACTCCTACTTCTCGTCACTCTGACTCTCTTAAACTTTCTAAAGAAAAGCAAGAACAAACGTCGACGGTGACTCATTCAACCCTTCAAAGTTGCAAGCCAAAAGGACCTGTTAGATGGTCTTCTCCTAGTCCAATACGTAATAATGTGAAATGCTAA

Coding sequence (CDS)

ATGACTTTAAGGTGTTTTCCTTTACTTTTCATATACTTGTTCTTCTTCATCATGTCTTCTCCTGCAACCTTGATGGCAACTTCAAGAAACATCCTCCCTTTAGAACCCACGACATTGACTAATAAGGCATTACCCTTCATTCAACGATCATCTCGACACCTAACTACAACTACAACTCCTACTTCTCGTCACTCTGACTCTCTTAAACTTTCTAAAGAAAAGCAAGAACAAACGTCGACGGTGACTCATTCAACCCTTCAAAGTTGCAAGCCAAAAGGACCTGTTAGATGGTCTTCTCCTAGTCCAATACGTAATAATGTGAAATGCTAA

Protein sequence

MTLRCFPLLFIYLFFFIMSSPATLMATSRNILPLEPTTLTNKALPFIQRSSRHLTTTTTPTSRHSDSLKLSKEKQEQTSTVTHSTLQSCKPKGPVRWSSPSPIRNNVKC

Homology

[Close]

BLAST of PI0004560 vs. ExPASy TrEMBL
Match: A0A0A0L2F6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G499295 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 4.9e-41
Identity = 93/110 (84.55%), Postives = 99/110 (90.00%), Query Frame = 0


Query: 1   MTLRCFPLLFIYLFF-FIMSSPATLMATSRNILPLEPTTLTNKALPFIQRSSRHLTTTTT 60
           MT RCFP LFIYLFF FIMSSP TLMATSRNILPLEPTTLTN AL F+QRSSRHL TTTT
Sbjct: 1   MTPRCFPFLFIYLFFLFIMSSPTTLMATSRNILPLEPTTLTNDALSFVQRSSRHLATTTT 60

Query: 61  PTSRHSDSLKLSKEKQEQTSTVTHSTLQSCKPKGPVRWSSPSPIRNNVKC 110
           PTSR S+SLKLSK + EQTST THSTLQSCKPKGP+RWSSPSP+RNN+KC
Sbjct: 61  PTSRRSNSLKLSKGRHEQTSTKTHSTLQSCKPKGPIRWSSPSPLRNNLKC 110

[Close]

BLAST of PI0004560 vs. ExPASy TrEMBL
Match: A0A5A7V1K1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1073G00050 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 7.6e-34
Identity = 81/93 (87.10%), Postives = 84/93 (90.32%), Query Frame = 0


Query: 18  MSSPATLMATSRNILPLEPTTLTNKALP-FIQRSSRHLTTTTTPTSRHSDSLKLSKEKQE 77
           MSSP TLMATSRN LPLEPTTLTN ALP FIQRSSRHL TTTTPTSR S+SLKLSK KQE
Sbjct: 1   MSSPTTLMATSRNTLPLEPTTLTNDALPAFIQRSSRHLATTTTPTSRPSNSLKLSKGKQE 60

Query: 78  QTSTVTHSTLQSCKPKGPVRWSSPSPIRNNVKC 110
           QTST THSTL SCKPKGPVRWSSPSP+RNNV+C
Sbjct: 61  QTSTATHSTLHSCKPKGPVRWSSPSPLRNNVEC 93

[Close]

BLAST of PI0004560 vs. ExPASy TrEMBL
Match: A0A0A0KYN0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G499280 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.2e-31
Identity = 80/110 (72.73%), Postives = 88/110 (80.00%), Query Frame = 0


Query: 1   MTLRCFPLLFIYLFFFIMSSPATL-MATSRNILPLEPTTLTNKALPFIQRSSRHLTTTTT 60
           M LRCFP LFIYLF FIMSS   L MATSRN+LPL PTTLTN ALPF Q+SSR+L  TTT
Sbjct: 1   MALRCFPFLFIYLFLFIMSSSTILIMATSRNLLPLPPTTLTNNALPFTQQSSRYLVATTT 60

Query: 61  PTSRHSDSLKLSKEKQEQTSTVTHSTLQSCKPKGPVRWSSPSPIRNNVKC 110
            T  HS +LK+ KE QEQTST+THSTLQSC PKGP+ WSSPSP RN V+C
Sbjct: 61  STMTHS-TLKMPKENQEQTSTMTHSTLQSCMPKGPITWSSPSPKRNGVQC 109

[Close]

BLAST of PI0004560 vs. NCBI nr
Match: KGN54792.1 (hypothetical protein Csa_012277 [Cucumis sativus])

HSP 1 Score: 176.8 bits (447), Expect = 1.0e-40
Identity = 93/110 (84.55%), Postives = 99/110 (90.00%), Query Frame = 0


Query: 1   MTLRCFPLLFIYLFF-FIMSSPATLMATSRNILPLEPTTLTNKALPFIQRSSRHLTTTTT 60
           MT RCFP LFIYLFF FIMSSP TLMATSRNILPLEPTTLTN AL F+QRSSRHL TTTT
Sbjct: 1   MTPRCFPFLFIYLFFLFIMSSPTTLMATSRNILPLEPTTLTNDALSFVQRSSRHLATTTT 60

Query: 61  PTSRHSDSLKLSKEKQEQTSTVTHSTLQSCKPKGPVRWSSPSPIRNNVKC 110
           PTSR S+SLKLSK + EQTST THSTLQSCKPKGP+RWSSPSP+RNN+KC
Sbjct: 61  PTSRRSNSLKLSKGRHEQTSTKTHSTLQSCKPKGPIRWSSPSPLRNNLKC 110

[Close]

BLAST of PI0004560 vs. NCBI nr
Match: KAA0060707.1 (hypothetical protein E6C27_scaffold496G00110 [Cucumis melo var. makuwa] >TYK21843.1 hypothetical protein E5676_scaffold1073G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 152.9 bits (385), Expect = 1.6e-33
Identity = 81/93 (87.10%), Postives = 84/93 (90.32%), Query Frame = 0


Query: 18  MSSPATLMATSRNILPLEPTTLTNKALP-FIQRSSRHLTTTTTPTSRHSDSLKLSKEKQE 77
           MSSP TLMATSRN LPLEPTTLTN ALP FIQRSSRHL TTTTPTSR S+SLKLSK KQE
Sbjct: 1   MSSPTTLMATSRNTLPLEPTTLTNDALPAFIQRSSRHLATTTTPTSRPSNSLKLSKGKQE 60

Query: 78  QTSTVTHSTLQSCKPKGPVRWSSPSPIRNNVKC 110
           QTST THSTL SCKPKGPVRWSSPSP+RNNV+C
Sbjct: 61  QTSTATHSTLHSCKPKGPVRWSSPSPLRNNVEC 93

[Close]

BLAST of PI0004560 vs. NCBI nr
Match: KGN54790.1 (hypothetical protein Csa_012154 [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 2.5e-31
Identity = 80/110 (72.73%), Postives = 88/110 (80.00%), Query Frame = 0


Query: 1   MTLRCFPLLFIYLFFFIMSSPATL-MATSRNILPLEPTTLTNKALPFIQRSSRHLTTTTT 60
           M LRCFP LFIYLF FIMSS   L MATSRN+LPL PTTLTN ALPF Q+SSR+L  TTT
Sbjct: 1   MALRCFPFLFIYLFLFIMSSSTILIMATSRNLLPLPPTTLTNNALPFTQQSSRYLVATTT 60

Query: 61  PTSRHSDSLKLSKEKQEQTSTVTHSTLQSCKPKGPVRWSSPSPIRNNVKC 110
            T  HS +LK+ KE QEQTST+THSTLQSC PKGP+ WSSPSP RN V+C
Sbjct: 61  STMTHS-TLKMPKENQEQTSTMTHSTLQSCMPKGPITWSSPSPKRNGVQC 109

[Close]

BLAST of PI0004560 vs. NCBI nr
Match: KAG6595583.1 (hypothetical protein SDJN03_12136, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 57.8 bits (138), Expect = 6.9e-05
Identity = 39/100 (39.00%), Postives = 55/100 (55.00%), Query Frame = 0


Query: 8   LLFIYLFFFIMSSPATLMATSRNILPLEPTTLTNKALPFIQRSSRHLTTTTTPTSRHSDS 67
           L  I+    ++SSP+T++ATSR++L L+            + S         PTS   D+
Sbjct: 9   LTIIFFLLIVISSPSTIIATSRHMLALD-----------TKESPPQPPMDKPPTSNDFDT 68

Query: 68  LKLSKEKQEQTSTVTHSTLQSCKPKGPVRWSSPSPIRNNV 108
           L L    +     +  S ++SCKPKGPVRWSSPSPIRNN+
Sbjct: 69  LSLPNGTKAM-PPMPESAVRSCKPKGPVRWSSPSPIRNNL 96

The following BLAST results are available for this feature:

BLAST of PI0004560 vs.


Match Name	E-value	Identity	Description

BLAST of PI0004560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2F6	4.9e-41	84.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G499295 PE=4 SV=1	[more]
A0A5A7V1K1	7.6e-34	87.10	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KYN0	1.2e-31	72.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G499280 PE=4 SV=1	[more]

BLAST of PI0004560 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54792.1	1.0e-40	84.55	hypothetical protein Csa_012277 [Cucumis sativus]	[more]
KAA0060707.1	1.6e-33	87.10	hypothetical protein E6C27_scaffold496G00110 [Cucumis melo var. makuwa] >TYK2184...	[more]
KGN54790.1	2.5e-31	72.73	hypothetical protein Csa_012154 [Cucumis sativus]	[more]
KAG6595583.1	6.9e-05	39.00	hypothetical protein SDJN03_12136, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of PI0004560 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0004560.1	PI0004560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane