PI0004553 (gene) Melon (PI 482460) v1

Overview


Name	PI0004553
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr11: 4058968 .. 4059585 (-)
RNA-Seq Expression	PI0004553
Synteny	PI0004553

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCATTCGAAAACAAATTCCTTTTTTCCTTTCTCCGTTTTTCTTAATCTTCGAAAATTATGGGTAGGAGAGAGAGAGAAATTAGAGGTACTGATGCTGACCTGGCGACTATTGGGATTGAAGGATTCAAACTAATCGACAAATTCTTCGGTCGAGCTCCTCCGGCTAGAAGGGTGGCGGCAACGGATAGGCCAACTCAGCTGCAGCCACCGCGTAATGTGGAGCAACCACCTTCGAAGAAGAAAGAGAAACAGGCGGCGGCGGTGGTGACTTCCGATCAGTTGGCCAAAACCCGCGGGGGGATCGTGATAACAACTTGGCGTTCGTATGCAAAACGAAAATAGCTACCTCTGTTTTTCTCTACAACCAATGGATGGATGCTCATAATACATAAATAAAGAAATATAGGTACTTAACTGCAAGCCTGCAATATAGAAATAAATAGAGATATGGGTACTTAACTGCAGTATATTATAAAATATATATGTATATTATATATGAAGCTGTAGCTATAGCTTGGTTATGTTCTCTCTTGGCTCTTTAGTAATATCAAAAAGTATGCATGTTGAACTAAACGTTATGAAATCCCCTCTCTACAAAGCTATAAAGCAAATTAGTT

mRNA sequence

GCCATTCGAAAACAAATTCCTTTTTTCCTTTCTCCGTTTTTCTTAATCTTCGAAAATTATGGGTAGGAGAGAGAGAGAAATTAGAGGTACTGATGCTGACCTGGCGACTATTGGGATTGAAGGATTCAAACTAATCGACAAATTCTTCGGTCGAGCTCCTCCGGCTAGAAGGGTGGCGGCAACGGATAGGCCAACTCAGCTGCAGCCACCGCGTAATGTGGAGCAACCACCTTCGAAGAAGAAAGAGAAACAGGCGGCGGCGGTGGTGACTTCCGATCAGTTGGCCAAAACCCGCGGGGGGATCGTGATAACAACTTGGCGTTCGTATGCAAAACGAAAATAGCTACCTCTGTTTTTCTCTACAACCAATGGATGGATGCTCATAATACATAAATAAAGAAATATAGGTACTTAACTGCAAGCCTGCAATATAGAAATAAATAGAGATATGGGTACTTAACTGCAGTATATTATAAAATATATATGTATATTATATATGAAGCTGTAGCTATAGCTTGGTTATGTTCTCTCTTGGCTCTTTAGTAATATCAAAAAGTATGCATGTTGAACTAAACGTTATGAAATCCCCTCTCTACAAAGCTATAAAGCAAATTAGTT

Coding sequence (CDS)

ATGGGTAGGAGAGAGAGAGAAATTAGAGGTACTGATGCTGACCTGGCGACTATTGGGATTGAAGGATTCAAACTAATCGACAAATTCTTCGGTCGAGCTCCTCCGGCTAGAAGGGTGGCGGCAACGGATAGGCCAACTCAGCTGCAGCCACCGCGTAATGTGGAGCAACCACCTTCGAAGAAGAAAGAGAAACAGGCGGCGGCGGTGGTGACTTCCGATCAGTTGGCCAAAACCCGCGGGGGGATCGTGATAACAACTTGGCGTTCGTATGCAAAACGAAAATAG

Protein sequence

MGRREREIRGTDADLATIGIEGFKLIDKFFGRAPPARRVAATDRPTQLQPPRNVEQPPSKKKEKQAAAVVTSDQLAKTRGGIVITTWRSYAKRK

Homology

[Close]

BLAST of PI0004553 vs. ExPASy TrEMBL
Match: A0A0A0KI19 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318680 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.1e-27
Identity = 78/99 (78.79%), Postives = 81/99 (81.82%), Query Frame = 0


Query: 1  MGRREREIRGTDADLATIGIEGFKLIDKFFGRAPPA---RRVAATD-RPTQLQPPRNV-E 60
          MGRREREI  TDA+LA IGIEGFKLIDKFFGRA      R VAAT+ RP Q+QPPR V E
Sbjct: 1  MGRREREIIDTDANLARIGIEGFKLIDKFFGRASTTGGRRVVAATEMRPAQMQPPRKVAE 60

Query: 61 QPPSKKKEKQAAAVVTSDQLAKTRGGIVITTWRSYAKRK 95
          QPPSK KEKQ  AVVTSD LAKTRGGIVITTWRSYAKRK
Sbjct: 61 QPPSKTKEKQ-GAVVTSDHLAKTRGGIVITTWRSYAKRK 98

[Close]

BLAST of PI0004553 vs. ExPASy TrEMBL
Match: A0A0A0KG95 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318690 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 7.8e-19
Identity = 61/92 (66.30%), Postives = 68/92 (73.91%), Query Frame = 0


Query: 4  REREIRGTDADLATIGIEGFKLIDKFFGRAPP--ARRVAA-TDRPTQLQPPRNVEQPPSK 63
          REREIRG+  DLA IG EGF++ID++FGRA    ARRVAA T RP   QPPR  EQPP  
Sbjct: 5  REREIRGSRGDLAKIGREGFQIIDEYFGRASSTGARRVAAKTARPALPQPPRKAEQPPRI 64

Query: 64 KKEKQAAAVVTSDQLAKTRGGIVITTWRSYAK 93
          +KEK  AA VTSDQ+AK  GG VITTWR YAK
Sbjct: 65 RKEKPVAA-VTSDQVAKHGGGTVITTWRPYAK 95

[Close]

BLAST of PI0004553 vs. NCBI nr
Match: KGN47421.1 (hypothetical protein Csa_021737 [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 4.2e-27
Identity = 78/99 (78.79%), Postives = 81/99 (81.82%), Query Frame = 0


Query: 1  MGRREREIRGTDADLATIGIEGFKLIDKFFGRAPPA---RRVAATD-RPTQLQPPRNV-E 60
          MGRREREI  TDA+LA IGIEGFKLIDKFFGRA      R VAAT+ RP Q+QPPR V E
Sbjct: 1  MGRREREIIDTDANLARIGIEGFKLIDKFFGRASTTGGRRVVAATEMRPAQMQPPRKVAE 60

Query: 61 QPPSKKKEKQAAAVVTSDQLAKTRGGIVITTWRSYAKRK 95
          QPPSK KEKQ  AVVTSD LAKTRGGIVITTWRSYAKRK
Sbjct: 61 QPPSKTKEKQ-GAVVTSDHLAKTRGGIVITTWRSYAKRK 98

[Close]

BLAST of PI0004553 vs. NCBI nr
Match: KGN47422.1 (hypothetical protein Csa_021740 [Cucumis sativus])

HSP 1 Score: 102.8 bits (255), Expect = 1.6e-18
Identity = 61/92 (66.30%), Postives = 68/92 (73.91%), Query Frame = 0


Query: 4  REREIRGTDADLATIGIEGFKLIDKFFGRAPP--ARRVAA-TDRPTQLQPPRNVEQPPSK 63
          REREIRG+  DLA IG EGF++ID++FGRA    ARRVAA T RP   QPPR  EQPP  
Sbjct: 5  REREIRGSRGDLAKIGREGFQIIDEYFGRASSTGARRVAAKTARPALPQPPRKAEQPPRI 64

Query: 64 KKEKQAAAVVTSDQLAKTRGGIVITTWRSYAK 93
          +KEK  AA VTSDQ+AK  GG VITTWR YAK
Sbjct: 65 RKEKPVAA-VTSDQVAKHGGGTVITTWRPYAK 95

[Close]

BLAST of PI0004553 vs. NCBI nr
Match: KAG6575081.1 (hypothetical protein SDJN03_25720, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 81.6 bits (200), Expect = 3.9e-12
Identity = 47/78 (60.26%), Postives = 53/78 (67.95%), Query Frame = 0


Query: 14 DLATIGIEGFKLIDKFFGRAPPARRVA--ATDRPTQLQPPRNVEQPPSKKKEKQAAAVVT 73
          DLA IG EGF LID++FGRAP  RR A  A  RP   Q P   EQPP KK+EK   A V 
Sbjct: 6  DLAKIGREGFDLIDEYFGRAPATRRAAAVAAARPALPQAPCKAEQPPRKKREKMPVA-VN 65

Query: 74 SDQLAKTRGGIVITTWRS 90
           +Q+AK RGGIVITTWR+
Sbjct: 66 CNQVAKARGGIVITTWRA 82

[Close]

BLAST of PI0004553 vs. NCBI nr
Match: KAG6575082.1 (hypothetical protein SDJN03_25721, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 75.1 bits (183), Expect = 3.6e-10
Identity = 42/77 (54.55%), Postives = 51/77 (66.23%), Query Frame = 0


Query: 13 ADLATIGIEGFKLIDKFFGRAPPARRVAATDRPTQLQPPRNVEQPPSKKKEKQAAAVVTS 72
          ADLA IG EGF+LID++FGR P  RR A   RP   Q P   EQPP K +EK     V  
Sbjct: 5  ADLAKIGREGFELIDEYFGRVPATRRPAVA-RPALPQAPCKAEQPPRKMREK-LPVPVNC 64

Query: 73 DQLAKTRGGIVITTWRS 90
          +Q+A+ RGG+VITTWR+
Sbjct: 65 NQVARARGGVVITTWRA 79

[Close]

BLAST of PI0004553 vs. NCBI nr
Match: XP_023548315.1 (multiple organellar RNA editing factor 3, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 55.8 bits (133), Expect = 2.3e-04
Identity = 33/72 (45.83%), Postives = 40/72 (55.56%), Query Frame = 0


Query: 13 ADLATIGIEGFKLIDKFFGRAPPARR--VAATDRPTQLQPPRNVEQPPSKKKEKQAAAVV 72
          ADLA IG EGF+LID++FGR P  RR   AA  RP   Q P   EQPP K +EK    V 
Sbjct: 5  ADLAKIGREGFELIDEYFGRVPATRRAAAAAAGRPALPQAPCKAEQPPRKMREKLPVPVN 64

Query: 73 TSDQLAKTRGGI 83
           +     T+  +
Sbjct: 65 CNQNPDSTKNNL 76

The following BLAST results are available for this feature:

BLAST of PI0004553 vs.


Match Name	E-value	Identity	Description

BLAST of PI0004553 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KI19	2.1e-27	78.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318680 PE=4 SV=1	[more]
A0A0A0KG95	7.8e-19	66.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318690 PE=4 SV=1	[more]

BLAST of PI0004553 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47421.1	4.2e-27	78.79	hypothetical protein Csa_021737 [Cucumis sativus]	[more]
KGN47422.1	1.6e-18	66.30	hypothetical protein Csa_021740 [Cucumis sativus]	[more]
KAG6575081.1	3.9e-12	60.26	hypothetical protein SDJN03_25720, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6575082.1	3.6e-10	54.55	hypothetical protein SDJN03_25721, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023548315.1	2.3e-04	45.83	multiple organellar RNA editing factor 3, mitochondrial [Cucurbita pepo subsp. p...	[more]

BLAST of PI0004553 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0004553.1	PI0004553.1	mRNA