PI0004504 (gene) Melon (PI 482460) v1

Overview


Name	PI0004504
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B
Location	chr12: 1242914 .. 1248001 (-)
RNA-Seq Expression	PI0004504
Synteny	PI0004504

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGAAGGCGATTCTTAGACTGAGAGCAGGCACAAGGAAGAGAAGAGAAAGGGGAAAAGCTATGGGGAGGAAGAAGACAGTGGAGTTCGATGAATCTCCGCCGGACGATTTCGATCCGGAGCATCCGTATAAGGATCCAGTGGCGATGTTAGAGATGAGGGAATACATTGTAAGAGAGAAGTGGATTGATATTGAAAAGGCGAAGATACTGAGGGAAAAGCTCAGATGGTGCTACCGTATTGAAGGAGTCAACCATCTGCAGAAATGCCGTCATCTCGTTCAACAATACCTTGATTCCACTCGTGGCATCGGCTGGGGCAAGGACGGACGCCACCCATCCCTTCACGGTAGTTCTCTCCTTTCATCTCTCGTTATGTTTAATTTCCGAGAAATTTTAGCAATTTTTCATTTTTTTGCCTTTTTGGGAGAAAATGGAGATATTTCGAGGTACTGGAATCAGGTTGTGATTGGGAATGATGCTCACCAGTGGAAATTTGCTCCGTGTTGAAGTTGTTGTTTTCTGAAATATCTTTGGTTTATGAATCCCCTTGGACGTATACTTTTTGAAATTAATCTGATTCATGTCAACTTCTTGGAGTTGGTACTCGCTGGCTGGATTATTCTCCATTTTTTTCTTTTTTGTTTGGGTTTCCTATGCCATTTCAATGACCGAGTGAATGAATTAACTATACTTTCTCTACAATCATCTGATATTGTTTGCTTCTTGCTTTGCTTAGGTCCTAAAGTTGAACCAGCCGAATCGGAGTGAATCGCTGGGTGGAACAACGGTGAGTTCAAATGTTTGCAAGTTTTTGATTAATTTTAGTACCTCGTCGTACTGAAAATCAAACCTTTTCTTTTTGTCAAAGCTTGAATAAATAACAGTGTATATCAGCTCTTTGCTTTATTCGTGTACTGCTACGAGGTGTGAAAAGAATTATTAACTCAGATCCGTGGTTAATAATTCCGTTAGTTTCTAACTCTCTGTAAGTGTGATAACTTTGTAGCAATGCCTGCAAGCTTTCCTAATATTTTCTGAATGGGTAGCTTGTTTCTTAGAATGACTGAAATTGCTGAAAGGCTACACAATCATAGTTCTTTTAAGTGTATGTAGGAGACATGAAGTTAACATTAAGTGGAGGGTTGTTGAAGCTGTAGGTATCGTGGGAATGTTCTCATACTGTGGGATCCTCGTAATTGGTTGTCCAATTTTGTTGTTGTTGTTGATAGAATCAACAACTTTCATTGAGAGAAAAATAAAAGAATACAAGGGCCTACAAAATACAAACCCACAAAAGCAACCCCTCCAAAGAAAGGGTTTCCAACTAAGTATGATGTAATCTTGGAAATAATTACAAAAAAGCTTCAATAGCGAAGCCCAAAGAGAAACATGAAACTTCACTAGGGTCCTTATGCACACCTCTAAATACTCGATTATTCCTCTCCAAATGTCCCAGAGGCCACAACACAGCACACACAATAGCAAATCACAACAAACGGTCTTTCTCTATAATTGGTTGTCCTTAGAGGTGGTGTAAGTTGGGGATTTTGTCATTTTACGAGGCCCTTGTAATTAGTTTTACTTAGAAGTGATGTGAGGTGGTTGTGCTTCTACTTACTTTGCAGTAATTCTATTCCATTGGAATCGATCACTGGTGCTTGTGCAGTAACACTATAGGGAGAGACATGCTCTTTGAAGGAGCTGGATCAGCCATCTTAGGTTTTGCAGGCATTGTTGGCATATTTTTGCAGGCTTTAGCGTTACTATATTCACCCTGAAGAAGTTGAATATAAATGGGATTACTACTACCATAGAGGATTTTTTTGGGTCTATTCAAGTTCATGATGAGTTGGGATCTCCTCTTTGGTAACTTCTCTTGGTCCTATCTTTGTCTTTCAATGGTACATTGTACACTTGGCAGATGCATTTTTGTCTATAGGGTGGCTGGATATATTTCAAGGACATCAAAAAATATTTCTTTTTAAAGTATATTTTAGACCATTGGCCTATTTTTCTCAACATTAGGATTGCTGAGTGGGGCTCTTGGCCATGTAGTTTTGAGAACATTTTATTACGATGACCTCTTCTTTAGCCAGATTGTTTAGGATGGGCTTCATGTATGCCATTGTATTCTTTCATTCCTTTTCAATAAAAGCAGTCTTTCCCTCTATATTATGGGTTTTCAGGTAATCGGTAAGTGGGAAGGATATAATTTTGGTGGGTGAAATAGGGCTTGAGAGTGATCTCAAGATTGGGAAGGTCAAAGTACCTCAAACACTGGTTTATTTTGTTTCTTCACTATCTTTTACAATTCAATATAACTGGGTTCTATCACAAAGTTATTACAGCAATTCCCTTTAGAGTTCAGTACACGCATGGCCGTATGGGCATCACTCTGCTAGTGCTAGGTGAGGTACCTGCTTCTGTGACTAAGCTGAAGAATGCGCATAAATTTGTTTCGACCGACTCTTATCCTATATTTCAACAAGTTCATAAATTATGGGCTTGTAATCCGCAGCCCAAAAATCCAAGCTTTGGGCTGGAATATGATGATCTTTATTAGGGCCTGCACCTCACATCACATTTCTACCTTCTTTTAACCCAACTTTTAAGGAGAAAAGTGTCAATAATTTTAAAAGATTTTTTCCCTCTACAATCTCAAATAAAAGCTTAACTATCTTTAACTTTTCACCATCAAATTATTCGTCATGCTACTTTTCTTCACATAAAAAAAGAGGAAAATTATCAACATTTTTGTATTTTGTGCCTCATGAGAAAAAAAATGTTTCTTTTAATTATCTTTTGCGCACTGTGCTTAAGCTCTATTATGGTTTAGTGTGCCAAGAGTTTAATAAGACTCGACCATTTCTAATCAAGTGTCCTTAGGTAGTTCATTTCAAGCATTCATTGATTGGGCCTAGTAGTCAATAAGGGGCCATGGGTAGGTGGGTAATTACTCGAGGTGCATGCAAGCTGACTTGGACACTCACATATGTTAAAATAGGGAAGGAAAAGGAAGGGAAAAAAAAAACTTCACTCCTAGAGAGCCTGTCTAATAGGAAAGTCAATGATCTATTCTTCTTACCTTCCCTTCTTCCCCTCTTTGCCTAAGTTCCAATGATAGTTGTATTTGGATTTTTGTTGGGTGATGTGTCCCCGTGGGTACTCTTGTTAATCTTTCTGCTTTTGCTTGTCCTTAGTCTTTAATCATTCTTTTCTTGGTTGGTTGCTTTAGAGGATATATCACGGCTACAAAGGATCTTATGTAGGGTTTGTCGTGTGTTCTTTGTTAATGAGCATTACTGCTTTAGAAGATTTGAATATTTCCTATTGAGATGTCACTTTGTGCAAAGATTTGGAATAGATTCTCGAAGATCTTTAGTGTCAATTTGAATCTCAAGCAGGGGCTTCATGAATCATGATGGAGGAGGCTGTCATCTATCCAGTTGTCGTGAAAGAAGCTTATCTCTTTGGTAGATTGCTTCTGTTTTTTTTTATAATTATTATTCGTGAGGAAGCGTATTGCCGTATTGGCAGAGAAAATTAAGCTCAACACTGAAAATACTCTAAATATTTATTCTCTAACAATTGGAGCCTCTTATAATTTTTCTTGTTTGTTGGGCCCATTTTCCCCGTCGGCCCATATTTTCTTTTGTAGCTCGTTCTTTCTCTGTCCTGAGTGAGAGGCATTCTTCATTTAAAAAGAAAAAAGAAAAGAAATTGGATATTAAAAGGGAAAAAAACTATGAACTTCAGCTAGGCTGGAGTTTGGTTTTGCTGGAAAGAGCAATACAGCTACCATTCCATTAATAATCTGTACTAAGTGTATATTATAACTCAATGGCCACAACCCAGCCAAAAATTGGCCCAAATGTGCCCCAGCCTCTGAAGGCTTGAAACATTTTTTTGTTTCTTTCGTACCAAATTGTTCATATAATAATAAAGTAGCCAGCCTGCCATAACGAATGGCATGTACCCTAAAAAGGAGAGCCTAAGATAACTTCATCATTGCACGACCTGAATTTATAACTGAGGAATCCAAAAGTCTTCCAACTACAATGTGATGCACGCCTTAGTTCAACAATGGCAAAGCCGCAAAAGATGGTTTGAATCTTCCAAAGTTTACCTAATACACTATAGGACCAAAGAAAAAGAAGAAGAAATTCTTTTGATAAAGTTAACGATATTATTCCTCCAAAATCCAGCCAAGAAAACAGCCAGATTTCTTCAAGATCTTCAATGGCCAAAGCATGGAGAAGAAAGGGTGGAGAGATGAAATGAGGGAAGAAACTTATGGATTACAAAGTTCTGTACTTTTTAGTCAAGTTGATGATGCATTTGGAGGAAACTTTCTTATACTACTGTTAGCTTCGTCCATTTATTGTATCTTACGTCAGCATACTTTAAAAATAGAGTAGAGTTCACTTGCATGAAAAAAAGTATGATATTATGGGAGTACTATAAATTTTTTTGCCTTCGGTGATTCTTGTTTGTCACTATTTCTTATTCCGAGTTGGAAGGATGAAGGTTTTTCCGCATCTTTTGCAGGTAAACTAAATGGCTTGCAGGTAAATGTTTGGATGGTTTGACCCTCAGCTCTAGTTTTTATTATTACTATTTCCTTAGAAAAGAAAAAAGGAATATGCATGGATCATCACAAACGATACTATTGGCAATTGATTTACGTTAGGTTTTTTGTTATTGTCTGAAATTGTCAATAACTTGGACGTCAGAAACACACCCAAATAATCAAACATCTATCACTGCATCCTTCTGTTCAACCTCCGTATTACTTTTCGTTTATAGTATGGCTCCATCAGGTTGCCTATTTTAGAAAATTGATCACAGACTTTCGTAGTCAACTAGTCGATTTTCTGAGTTTGTATGAATTTGTAATTGGATTGTGCTTAAGTCGTGTGCTGTGCAAGTTTAATTTGTATTTGGATTTCCGTCTAGTTTAATCACCTTTTAAAAAAATTTATAGTTTCTATTTTCTTACTTTAAACTTTGTGAGTTTCTAGACCAGTTTGTGTGTATTTCGACTAATTTCACATGGATCAATTCTATAACATAGAATGTTAATTTGTA

mRNA sequence

GCGAAGGCGATTCTTAGACTGAGAGCAGGCACAAGGAAGAGAAGAGAAAGGGGAAAAGCTATGGGGAGGAAGAAGACAGTGGAGTTCGATGAATCTCCGCCGGACGATTTCGATCCGGAGCATCCGTATAAGGATCCAGTGGCGATGTTAGAGATGAGGGAATACATTGTAAGAGAGAAGTGGATTGATATTGAAAAGGCGAAGATACTGAGGGAAAAGCTCAGATGGTGCTACCGTATTGAAGGAGTCAACCATCTGCAGAAATGCCGTCATCTCGTTCAACAATACCTTGATTCCACTCGTGGCATCGGCTGGGGCAAGGACGGACGCCACCCATCCCTTCACGGTCCTAAAGTTGAACCAGCCGAATCGGAGTGAATCGCTGGGTGGAACAACGGTAAACTAAATGGCTTGCAGGTAAATGTTTGGATGGTTTGACCCTCAGCTCTAGTTTTTATTATTACTATTTCCTTAGAAAAGAAAAAAGGAATATGCATGGATCATCACAAACGATACTATTGGCAATTGATTTACGTTAGGTTTTTTGTTATTGTCTGAAATTGTCAATAACTTGGACGTCAGAAACACACCCAAATAATCAAACATCTATCACTGCATCCTTCTGTTCAACCTCCGTATTACTTTTCGTTTATAGTATGGCTCCATCAGGTTGCCTATTTTAGAAAATTGATCACAGACTTTCGTAGTCAACTAGTCGATTTTCTGAGTTTGTATGAATTTGTAATTGGATTGTGCTTAAGTCGTGTGCTGTGCAAGTTTAATTTGTATTTGGATTTCCGTCTAGTTTAATCACCTTTTAAAAAAATTTATAGTTTCTATTTTCTTACTTTAAACTTTGTGAGTTTCTAGACCAGTTTGTGTGTATTTCGACTAATTTCACATGGATCAATTCTATAACATAGAATGTTAATTTGTA

Coding sequence (CDS)

ATGGGGAGGAAGAAGACAGTGGAGTTCGATGAATCTCCGCCGGACGATTTCGATCCGGAGCATCCGTATAAGGATCCAGTGGCGATGTTAGAGATGAGGGAATACATTGTAAGAGAGAAGTGGATTGATATTGAAAAGGCGAAGATACTGAGGGAAAAGCTCAGATGGTGCTACCGTATTGAAGGAGTCAACCATCTGCAGAAATGCCGTCATCTCGTTCAACAATACCTTGATTCCACTCGTGGCATCGGCTGGGGCAAGGACGGACGCCACCCATCCCTTCACGGTCCTAAAGTTGAACCAGCCGAATCGGAGTGA

Protein sequence

MGRKKTVEFDESPPDDFDPEHPYKDPVAMLEMREYIVREKWIDIEKAKILREKLRWCYRIEGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEPAESE

Homology

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BLAST of PI0004504 vs. ExPASy Swiss-Prot
Match: Q94C12 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B OS=Arabidopsis thaliana OX=3702 GN=At3g18410 PE=3 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 2.0e-44
Identity = 84/106 (79.25%), Postives = 94/106 (88.68%), Query Frame = 0


Query: 1   MGRKKTV-EFDESPPDDFDPEHPYKDPVAMLEMREYIVREKWIDIEKAKILREKLRWCYR 60
           MGRKK + EF+ES PD FDPE+PYKDPVAM+EMRE+IVREKWI IEKAKILREK++WCYR
Sbjct: 1   MGRKKGLPEFEESAPDGFDPENPYKDPVAMVEMREHIVREKWIQIEKAKILREKVKWCYR 60

Query: 61  IEGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEPAESE 106
           +EGVNH QKCRHLVQQYLDSTRG+GWGKD R  SLHGPK E  E+E
Sbjct: 61  VEGVNHYQKCRHLVQQYLDSTRGVGWGKDHRPISLHGPKPEAVEAE 106

[Close]

BLAST of PI0004504 vs. ExPASy Swiss-Prot
Match: Q9M9B4 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-A OS=Arabidopsis thaliana OX=3702 GN=At1g49140 PE=1 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 8.4e-43
Identity = 84/107 (78.50%), Postives = 94/107 (87.85%), Query Frame = 0


Query: 1   MGRKKTV-EFDESPPDDFDPEHPYKDPVAMLEMREYIVREKWIDIEKAKILREKLRWCYR 60
           MGRKK + EF+ES PD FDPE+PYKDPVAM+EMRE+IVREKWI IEKAKILREK++WCYR
Sbjct: 1   MGRKKGLPEFEESAPDGFDPENPYKDPVAMVEMREHIVREKWIHIEKAKILREKVKWCYR 60

Query: 61  IEGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPK---VEPAE 104
           +EGVNH QKCRHLVQQYLD+TRG+GWGKD R  SLHGPK   VE AE
Sbjct: 61  VEGVNHYQKCRHLVQQYLDATRGVGWGKDHRPISLHGPKPVAVEEAE 107

[Close]

BLAST of PI0004504 vs. ExPASy Swiss-Prot
Match: Q03015 (NADH-ubiquinone oxidoreductase 12 kDa subunit, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=nuo-12.3 PE=3 SV=2)

HSP 1 Score: 57.4 bits (137), Expect = 1.1e-07
Identity = 23/55 (41.82%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 23 YKDPVAMLEMREYIVREKWIDIEKAKILREKLRWCYRIEGVNHLQKCRHLVQQYL 78
          Y D   + + ++ I+RE+W+ +   +++RE+L  CY  EGVNHL+KC HL ++YL
Sbjct: 25 YNDTKRLKQAQDAIIREQWVRVMMGRLVREELSKCYYREGVNHLEKCGHLRERYL 79

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BLAST of PI0004504 vs. ExPASy Swiss-Prot
Match: P80267 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10 (Fragment) OS=Solanum tuberosum OX=4113 PE=1 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 5.9e-04
Identity = 20/29 (68.97%), Postives = 22/29 (75.86%), Query Frame = 0


Query: 2  GRKKTVEFDESPPDDFDPEHPYKDPVAML 31
          GRKK V+FDE  PDDFDP +PYK  VA L
Sbjct: 1  GRKKGVQFDEGAPDDFDPNNPYKKDVAFL 29

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BLAST of PI0004504 vs. ExPASy TrEMBL
Match: A0A0A0LSZ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042310 PE=3 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 2.0e-55
Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MGRKKTVEFDESPPDDFDPEHPYKDPVAMLEMREYIVREKWIDIEKAKILREKLRWCYRI 60
           MGRKKTVEFDESPPDDFDPE+PYKDPVAMLEMREYIVREKWIDIEKAKILREKLRWCYRI
Sbjct: 1   MGRKKTVEFDESPPDDFDPENPYKDPVAMLEMREYIVREKWIDIEKAKILREKLRWCYRI 60

Query: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEPAESE 106
           EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEPAESE
Sbjct: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEPAESE 105

[Close]

BLAST of PI0004504 vs. ExPASy TrEMBL
Match: A0A1S3C7E2 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B OS=Cucumis melo OX=3656 GN=LOC103497523 PE=3 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 2.0e-55
Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MGRKKTVEFDESPPDDFDPEHPYKDPVAMLEMREYIVREKWIDIEKAKILREKLRWCYRI 60
           MGRKKTVEFDESPPDDFDPE+PYKDPVAMLEMREYIVREKWIDIEKAKILREKLRWCYRI
Sbjct: 1   MGRKKTVEFDESPPDDFDPENPYKDPVAMLEMREYIVREKWIDIEKAKILREKLRWCYRI 60

Query: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEPAESE 106
           EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEPAESE
Sbjct: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEPAESE 105

[Close]

BLAST of PI0004504 vs. ExPASy TrEMBL
Match: A0A6J1KJX6 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B OS=Cucurbita maxima OX=3661 GN=LOC111495279 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 8.4e-54
Identity = 101/105 (96.19%), Postives = 103/105 (98.10%), Query Frame = 0


Query: 1   MGRKKTVEFDESPPDDFDPEHPYKDPVAMLEMREYIVREKWIDIEKAKILREKLRWCYRI 60
           MGRKKTVEFDESPPDDFDPEHPYKDPVAMLEMRE+IVREKWI+IEKAKILREKLRWCYRI
Sbjct: 1   MGRKKTVEFDESPPDDFDPEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI 60

Query: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEPAESE 106
           EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVE  ESE
Sbjct: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVESVESE 105

[Close]

BLAST of PI0004504 vs. ExPASy TrEMBL
Match: A0A6J1E7Z3 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B OS=Cucurbita moschata OX=3662 GN=LOC111431621 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 8.4e-54
Identity = 101/105 (96.19%), Postives = 103/105 (98.10%), Query Frame = 0


Query: 1   MGRKKTVEFDESPPDDFDPEHPYKDPVAMLEMREYIVREKWIDIEKAKILREKLRWCYRI 60
           MGRKKTVEFDESPPDDFDPEHPYKDPVAMLEMRE+IVREKWI+IEKAKILREKLRWCYRI
Sbjct: 1   MGRKKTVEFDESPPDDFDPEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI 60

Query: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEPAESE 106
           EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVE  ESE
Sbjct: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVESVESE 105

[Close]

BLAST of PI0004504 vs. ExPASy TrEMBL
Match: A0A6J1JUQ8 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like OS=Cucurbita maxima OX=3661 GN=LOC111489918 PE=3 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 5.4e-53
Identity = 100/105 (95.24%), Postives = 102/105 (97.14%), Query Frame = 0


Query: 1   MGRKKTVEFDESPPDDFDPEHPYKDPVAMLEMREYIVREKWIDIEKAKILREKLRWCYRI 60
           MGRKKTVEFDESPPDDFD EHPYKDPVAMLEMRE+IVREKWIDIEKAKILREKLRWCYRI
Sbjct: 1   MGRKKTVEFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWIDIEKAKILREKLRWCYRI 60

Query: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEPAESE 106
           EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVE  E+E
Sbjct: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVEAE 105

[Close]

BLAST of PI0004504 vs. NCBI nr
Match: XP_004137473.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Cucumis sativus] >XP_004137474.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Cucumis sativus] >XP_008457988.1 PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Cucumis melo] >KGN64119.1 hypothetical protein Csa_013648 [Cucumis sativus])

HSP 1 Score: 224.6 bits (571), Expect = 4.1e-55
Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MGRKKTVEFDESPPDDFDPEHPYKDPVAMLEMREYIVREKWIDIEKAKILREKLRWCYRI 60
           MGRKKTVEFDESPPDDFDPE+PYKDPVAMLEMREYIVREKWIDIEKAKILREKLRWCYRI
Sbjct: 1   MGRKKTVEFDESPPDDFDPENPYKDPVAMLEMREYIVREKWIDIEKAKILREKLRWCYRI 60

Query: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEPAESE 106
           EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEPAESE
Sbjct: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEPAESE 105

[Close]

BLAST of PI0004504 vs. NCBI nr
Match: XP_038894613.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Benincasa hispida] >XP_038894614.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Benincasa hispida] >XP_038894615.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Benincasa hispida])

HSP 1 Score: 222.2 bits (565), Expect = 2.0e-54
Identity = 103/105 (98.10%), Postives = 104/105 (99.05%), Query Frame = 0


Query: 1   MGRKKTVEFDESPPDDFDPEHPYKDPVAMLEMREYIVREKWIDIEKAKILREKLRWCYRI 60
           MGRKKTVEFDESPPDDFDPEHPYKDPVAMLEMRE+IVREKWIDIEKAKILREKLRWCYRI
Sbjct: 1   MGRKKTVEFDESPPDDFDPEHPYKDPVAMLEMREHIVREKWIDIEKAKILREKLRWCYRI 60

Query: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEPAESE 106
           EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVE AESE
Sbjct: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAAESE 105

[Close]

BLAST of PI0004504 vs. NCBI nr
Match: XP_022924082.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Cucurbita moschata] >XP_023001015.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Cucurbita maxima] >XP_023519758.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Cucurbita pepo subsp. pepo] >XP_023519759.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Cucurbita pepo subsp. pepo] >KAG7019947.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 219.2 bits (557), Expect = 1.7e-53
Identity = 101/105 (96.19%), Postives = 103/105 (98.10%), Query Frame = 0


Query: 1   MGRKKTVEFDESPPDDFDPEHPYKDPVAMLEMREYIVREKWIDIEKAKILREKLRWCYRI 60
           MGRKKTVEFDESPPDDFDPEHPYKDPVAMLEMRE+IVREKWI+IEKAKILREKLRWCYRI
Sbjct: 1   MGRKKTVEFDESPPDDFDPEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI 60

Query: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEPAESE 106
           EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVE  ESE
Sbjct: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVESVESE 105

[Close]

BLAST of PI0004504 vs. NCBI nr
Match: XP_022994087.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Cucurbita maxima] >XP_022994089.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Cucurbita maxima] >XP_022994090.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Cucurbita maxima] >XP_022994091.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Cucurbita maxima] >XP_022994092.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Cucurbita maxima])

HSP 1 Score: 216.5 bits (550), Expect = 1.1e-52
Identity = 100/105 (95.24%), Postives = 102/105 (97.14%), Query Frame = 0


Query: 1   MGRKKTVEFDESPPDDFDPEHPYKDPVAMLEMREYIVREKWIDIEKAKILREKLRWCYRI 60
           MGRKKTVEFDESPPDDFD EHPYKDPVAMLEMRE+IVREKWIDIEKAKILREKLRWCYRI
Sbjct: 1   MGRKKTVEFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWIDIEKAKILREKLRWCYRI 60

Query: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEPAESE 106
           EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVE  E+E
Sbjct: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVEAE 105

[Close]

BLAST of PI0004504 vs. NCBI nr
Match: XP_022137450.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Momordica charantia] >XP_022137451.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Momordica charantia])

HSP 1 Score: 215.7 bits (548), Expect = 1.9e-52
Identity = 99/105 (94.29%), Postives = 103/105 (98.10%), Query Frame = 0


Query: 1   MGRKKTVEFDESPPDDFDPEHPYKDPVAMLEMREYIVREKWIDIEKAKILREKLRWCYRI 60
           MGR+KTVEFDESPPDDFD E+PYKDPVAMLEMRE+IVREKWIDIEKAKILRE+LRWCYRI
Sbjct: 1   MGRRKTVEFDESPPDDFDAENPYKDPVAMLEMREHIVREKWIDIEKAKILRERLRWCYRI 60

Query: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEPAESE 106
           EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEP ESE
Sbjct: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEPGESE 105

[Close]

BLAST of PI0004504 vs. TAIR 10
Match: AT3G18410.1 (Complex I subunit NDUFS6 )

HSP 1 Score: 179.5 bits (454), Expect = 1.4e-45
Identity = 84/106 (79.25%), Postives = 94/106 (88.68%), Query Frame = 0


Query: 1   MGRKKTV-EFDESPPDDFDPEHPYKDPVAMLEMREYIVREKWIDIEKAKILREKLRWCYR 60
           MGRKK + EF+ES PD FDPE+PYKDPVAM+EMRE+IVREKWI IEKAKILREK++WCYR
Sbjct: 1   MGRKKGLPEFEESAPDGFDPENPYKDPVAMVEMREHIVREKWIQIEKAKILREKVKWCYR 60

Query: 61  IEGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEPAESE 106
           +EGVNH QKCRHLVQQYLDSTRG+GWGKD R  SLHGPK E  E+E
Sbjct: 61  VEGVNHYQKCRHLVQQYLDSTRGVGWGKDHRPISLHGPKPEAVEAE 106

[Close]

BLAST of PI0004504 vs. TAIR 10
Match: AT3G18410.2 (Complex I subunit NDUFS6 )

HSP 1 Score: 179.5 bits (454), Expect = 1.4e-45
Identity = 84/106 (79.25%), Postives = 94/106 (88.68%), Query Frame = 0


Query: 1   MGRKKTV-EFDESPPDDFDPEHPYKDPVAMLEMREYIVREKWIDIEKAKILREKLRWCYR 60
           MGRKK + EF+ES PD FDPE+PYKDPVAM+EMRE+IVREKWI IEKAKILREK++WCYR
Sbjct: 1   MGRKKGLPEFEESAPDGFDPENPYKDPVAMVEMREHIVREKWIQIEKAKILREKVKWCYR 60

Query: 61  IEGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEPAESE 106
           +EGVNH QKCRHLVQQYLDSTRG+GWGKD R  SLHGPK E  E+E
Sbjct: 61  VEGVNHYQKCRHLVQQYLDSTRGVGWGKDHRPISLHGPKPEAVEAE 106

[Close]

BLAST of PI0004504 vs. TAIR 10
Match: AT1G49140.1 (Complex I subunit NDUFS6 )

HSP 1 Score: 174.1 bits (440), Expect = 5.9e-44
Identity = 84/107 (78.50%), Postives = 94/107 (87.85%), Query Frame = 0


Query: 1   MGRKKTV-EFDESPPDDFDPEHPYKDPVAMLEMREYIVREKWIDIEKAKILREKLRWCYR 60
           MGRKK + EF+ES PD FDPE+PYKDPVAM+EMRE+IVREKWI IEKAKILREK++WCYR
Sbjct: 1   MGRKKGLPEFEESAPDGFDPENPYKDPVAMVEMREHIVREKWIHIEKAKILREKVKWCYR 60

Query: 61  IEGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPK---VEPAE 104
           +EGVNH QKCRHLVQQYLD+TRG+GWGKD R  SLHGPK   VE AE
Sbjct: 61  VEGVNHYQKCRHLVQQYLDATRGVGWGKDHRPISLHGPKPVAVEEAE 107

The following BLAST results are available for this feature:

BLAST of PI0004504 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94C12	2.0e-44	79.25	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B OS=Arabidopsis th...	[more]
Q9M9B4	8.4e-43	78.50	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-A OS=Arabidopsis th...	[more]
Q03015	1.1e-07	41.82	NADH-ubiquinone oxidoreductase 12 kDa subunit, mitochondrial OS=Neurospora crass...	[more]
P80267	5.9e-04	68.97	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10 (Fragment) OS=Solan...	[more]

BLAST of PI0004504 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSZ4	2.0e-55	99.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042310 PE=3 SV=1	[more]
A0A1S3C7E2	2.0e-55	99.05	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B OS=Cucumis melo O...	[more]
A0A6J1KJX6	8.4e-54	96.19	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B OS=Cucurbita maxi...	[more]
A0A6J1E7Z3	8.4e-54	96.19	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B OS=Cucurbita mosc...	[more]
A0A6J1JUQ8	5.4e-53	95.24	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like OS=Cucurbita...	[more]

BLAST of PI0004504 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004137473.1	4.1e-55	99.05	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Cucumis sativus]...	[more]
XP_038894613.1	2.0e-54	98.10	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Benincasa hispid...	[more]
XP_022924082.1	1.7e-53	96.19	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Cucurbita moscha...	[more]
XP_022994087.1	1.1e-52	95.24	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Cucurbita m...	[more]
XP_022137450.1	1.9e-52	94.29	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Momordica charan...	[more]

BLAST of PI0004504 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18410.1	1.4e-45	79.25	Complex I subunit NDUFS6	[more]
AT3G18410.2	1.4e-45	79.25	Complex I subunit NDUFS6	[more]
AT1G49140.1	5.9e-44	78.50	Complex I subunit NDUFS6	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019377	NADH-ubiquinone oxidoreductase, subunit 10	PFAM	PF10249	NDUFB10	coord: 24..80 e-value: 9.4E-5 score: 22.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..105
None	No IPR available	PANTHER	PTHR13094:SF4	NADH DEHYDROGENASE [UBIQUINONE] 1 BETA SUBCOMPLEX SUBUNIT 10-A-LIKE	coord: 1..100
IPR039993	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10	PANTHER	PTHR13094	NADH-UBIQUINONE OXIDOREDUCTASE PDSW SUBUNIT	coord: 1..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0004504.1	PI0004504.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005747	mitochondrial respiratory chain complex I