PI0004379 (gene) Melon (PI 482460) v1

BLAST of PI0004379 vs. ExPASy Swiss-Prot
Match: Q9LK40 (DNA-directed RNA polymerases IV and V subunit 2 OS=Arabidopsis thaliana OX=3702 GN=NRPD2 PE=1 SV=1)

HSP 1 Score: 1567.0 bits (4056), Expect = 0.0e+00
Identity = 771/1195 (64.52%), Postives = 940/1195 (78.66%), Query Frame = 0

Query: 21   PGMDLDTDDDDDYYSE--PVNIHDLGEAFLKDFCKKSSMAFFNQYGLISHQINSYNDFIK 80
            P MD+D  D +++ +    +N+ +LGE FL+ FCKK++ +FF++YGLISHQ+NSYN FI+
Sbjct: 2    PDMDIDVKDLEEFEATTGEINLSELGEGFLQSFCKKAATSFFDKYGLISHQLNSYNYFIE 61

Query: 81   NGIQKAFDFFGDILVQPGYDPSKKGDGEWRYASVKFGKVTLDKPKFWGGAASGKEYNMLP 140
            +G+Q  F  FG++LV+P +D  KK D +WRYA+VKFG+VT++KP F+   +  KE   LP
Sbjct: 62   HGLQNVFQSFGEMLVEPSFDVVKKKDNDWRYATVKFGEVTVEKPTFF---SDDKELEFLP 121

Query: 141  RHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVDKEPVEGASDNRDVFIGRL 200
             HARLQNMTYS+R+K+N+ +E++   +V SDKFKTG+D YV+K+ ++     +D+ IG +
Sbjct: 122  WHARLQNMTYSARIKVNVQVEVFKNTVVKSDKFKTGQDNYVEKKILD--VKKQDILIGSI 181

Query: 201  PVMVNSDLCWMKDE-----QKRDCEFDRG---------------EQICLRRLWISNVQGW 260
            PVMV S LC   ++     +K DC FD+G               EQ+C +RLWISN   W
Sbjct: 182  PVMVKSILCKTSEKGKENCKKGDCAFDQGGYFVIKGAEKVFIAQEQMCTKRLWISN-SPW 241

Query: 261  TVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWIY-----------SL 320
            TV++RSE KRNR I+RL EN K+ED K +EKVL VYFLSTE+PVW+            ++
Sbjct: 242  TVSFRSENKRNRFIVRLSENEKAEDYKRREKVLTVYFLSTEIPVWLLFFALGVSSDKEAM 301

Query: 321  HLV----DDPTVLNILFASVREVDNDDKWKDFRRGKRALTFLDNEIRKTSFPPAEKIEDC 380
             L+    DD ++ N L AS+     D   + FR G  ALT+++ +I+ T FPPAE +++C
Sbjct: 302  DLIAFDGDDASITNSLIASIHVA--DAVCEAFRCGNNALTYVEQQIKSTKFPPAESVDEC 361

Query: 381  LNLYLFASLKGLKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKRFELAAELLERELKV 440
            L+LYLF  L+ LK+K  FLGYMVKCLL +Y G+RKC+NRD FRNKR ELA ELLERE++V
Sbjct: 362  LHLYLFPGLQSLKKKARFLGYMVKCLLNSYAGKRKCENRDSFRNKRIELAGELLEREIRV 421

Query: 441  HIAHARRRMEKALQRDLYGDRQVRPIEHYLDASIITNGLSRAFSTGAWAHAFKRMERISG 500
            H+AHARR+M +A+Q+ L GD  ++PIEHYLDAS+ITNGLSRAFSTGAW+H F++MER+SG
Sbjct: 422  HLAHARRKMTRAMQKHLSGDGDLKPIEHYLDASVITNGLSRAFSTGAWSHPFRKMERVSG 481

Query: 501  VVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLIKN 560
            VVA LGRANPLQT+ +LRRTRQQV YTGKVGDARYPHPSHWGRVCFLSTPDGENCGL+KN
Sbjct: 482  VVANLGRANPLQTLIDLRRTRQQVLYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLVKN 541

Query: 561  LSGTGLVSLSTTKSIVPTLFRCGMENLVDNTSTSLSGKYKIFLDGEWVGVCEDSLSFVTK 620
            +S  GLVS  + +S+V  LF CGME L+D+T T L GK+K+ L+G+WVG+C DS SFV +
Sbjct: 542  MSLLGLVSTQSLESVVEKLFACGMEELMDDTCTPLFGKHKVLLNGDWVGLCADSESFVAE 601

Query: 621  VRRKRRSNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRIDKSKGENYTFQSL 680
            ++ +RR +    ++E+KRD+   EVRIF+DAGR+LRPLLVVENL ++ + K   Y F  L
Sbjct: 602  LKSRRRQSELPREMEIKRDKDDNEVRIFTDAGRLLRPLLVVENLQKLKQEKPSQYPFDHL 661

Query: 681  LDKGIIELIGTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLLGLSCGLVPFANHDH 740
            LD GI+ELIG EEEEDC  AW IK L+++     Y+HCELD+SFLLG+SC +VPFANHDH
Sbjct: 662  LDHGILELIGIEEEEDCNTAWGIKQLLKEPKI--YTHCELDLSFLLGVSCAVVPFANHDH 721

Query: 741  ARRALFQSQKHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMTADCLGTPGYLSSHT 800
             RR L+QSQKH  QAIGFS+TN N R DTLS QL YPQ+PLF+T+ ++C           
Sbjct: 722  GRRVLYQSQKHCQQAIGFSSTNPNIRCDTLSQQLFYPQKPLFKTLASEC----------- 781

Query: 801  GILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHTRSYKAEVDNKESS 860
              L K   +NGQNAIVAVNVHLGYNQEDS+VMN+ASLERGMFRSE  RSYKAEVD K+ S
Sbjct: 782  --LKKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQIRSYKAEVDAKD-S 841

Query: 861  EKRRKSDDAINFGKTQSKIGRVDSLDDDGFPYIGANLQSGDIVIGRCAESGADHSIKLKH 920
            EKR+K D+ + FGKT SKIG+VDSL+DDGFP+IGAN+ +GDIVIGRC ESGADHSIKLKH
Sbjct: 842  EKRKKMDELVQFGKTHSKIGKVDSLEDDGFPFIGANMSTGDIVIGRCTESGADHSIKLKH 901

Query: 921  TEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTI 980
            TE+G+VQKVVLSSND+GKN+A VSLRQVRSPCLGDKFSSMHGQKGVLG+LE Q+NFPFTI
Sbjct: 902  TERGIVQKVVLSSNDEGKNFAAVSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTI 961

Query: 981  QGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAA-----GGSLKY------ATPFSTPSV 1040
            QGIVPDIVINPHAFPSRQTPGQLLEAAL KGIA      G S  Y      ATPFSTP V
Sbjct: 962  QGIVPDIVINPHAFPSRQTPGQLLEAALSKGIACPIQKEGSSAAYTKLTRHATPFSTPGV 1021

Query: 1041 DAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVH 1100
              IT+QLHRAGFSRWG+ERVYNGR+GEMMRS+IFMGPTFYQRL+HM+EDKVKFRNTGPVH
Sbjct: 1022 TEITEQLHRAGFSRWGNERVYNGRSGEMMRSMIFMGPTFYQRLVHMSEDKVKFRNTGPVH 1081

Query: 1101 PLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVASV 1160
            PLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMH+C+KCK  A+V
Sbjct: 1082 PLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHICRKCKTYANV 1141

Query: 1161 IQRSVAGGRKIRGPYCRVCESVDDIVRVNVPYGAKLLCQELFSMGINLKFETQLC 1168
            I+R+ + GRKIRGPYCRVC S D +VRV VPYGAKLLCQELFSMGI L F+T+LC
Sbjct: 1142 IERTPSSGRKIRGPYCRVCVSSDHVVRVYVPYGAKLLCQELFSMGITLNFDTKLC 1172

BLAST of PI0004379 vs. ExPASy Swiss-Prot
Match: Q9LV32 (DNA-directed RNA polymerase D subunit 2b OS=Arabidopsis thaliana OX=3702 GN=NRPD2b PE=2 SV=1)

HSP 1 Score: 1491.5 bits (3860), Expect = 0.0e+00
Identity = 745/1187 (62.76%), Postives = 905/1187 (76.24%), Query Frame = 0

Query: 28   DDDDDYYSEPVNIHDLGEAFLKDFCKKSSMAFFNQYGLISHQINSYNDFIKNGIQKAFDF 87
            D D+   +  +NI +LGE+FL+ FCKK++ +FF ++GLISHQ+NSYN FI++G+Q  F+ 
Sbjct: 2    DVDEIESAGQINISELGESFLQTFCKKAATSFFEEFGLISHQLNSYNFFIEHGLQNVFES 61

Query: 88   FGDILVQPGYDPSKKGDGEWRYASVKFGKVTLDKPKFWGGAASGKEYNMLPRHARLQNMT 147
            FGDILV+P +D  KK DG+WRYA+V F K+                              
Sbjct: 62   FGDILVEPSFDVIKKKDGDWRYATV-FKKI------------------------------ 121

Query: 148  YSSRMKINISLEIYTQKLVSSDKFKTGKDQYVDKEPVEGASDNRDVFIGRLPVMVNSDLC 207
                             ++  DKFKTG+D+YV+KE ++     +D+ IG +PVMV S LC
Sbjct: 122  -----------------VIKHDKFKTGQDEYVEKEILD--VKKQDILIGSIPVMVKSVLC 181

Query: 208  WMKDEQKRDCE-----FDRG---------------EQICLRRLWISNVQGWTVAYRSEVK 267
               ++ K +C+     FD+G               EQ+C +RLWISN   WTV++RSE K
Sbjct: 182  KTSEKGKENCKKGNCAFDQGGYFVIKGAEKVFIAQEQMCTKRLWISN-SPWTVSFRSETK 241

Query: 268  RNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWIY-----------SLHLV----DD 327
            RNR I+RL EN K+ED K  EKVL VYFLSTE+PVW+            ++ L+    DD
Sbjct: 242  RNRFIVRLSENEKAEDYKIMEKVLTVYFLSTEIPVWLLFFALGVSSDKEAMDLIAFDGDD 301

Query: 328  PTVLNILFASVREVDNDDKWKDFRRGKRALTFLDNEIRKTSFPPAEKIEDCLNLYLFASL 387
             ++ N L AS+ E   D   + FR G  ALT+++++I+ T FPPAE ++DCL LYLF  L
Sbjct: 302  ASITNSLIASIHEA--DAVCEAFRCGNNALTYVEHQIKSTKFPPAESVDDCLRLYLFPCL 361

Query: 388  KGLKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKRFELAAELLERELKVHIAHARRRM 447
            +GLK+K  FLGYMVKCLL AY G+RKC+NRD FRNKR ELA ELLERE++VH+AHARR+M
Sbjct: 362  QGLKKKARFLGYMVKCLLSAYAGKRKCENRDSFRNKRIELAGELLEREIRVHLAHARRKM 421

Query: 448  EKALQRDLYGDRQVRPIEHYLDASIITNGLSRAFSTGAWAHAFKRMERISGVVATLGRAN 507
             +A+Q+ L GD  ++PIEHYLDAS+ITNGL+RAFSTGAW+H F++MER+SGVVA LGRAN
Sbjct: 422  TRAMQKQLSGDGDLKPIEHYLDASVITNGLNRAFSTGAWSHPFRKMERVSGVVANLGRAN 481

Query: 508  PLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLIKNLSGTGLVSL 567
            PLQT+ +LRRTRQQV YTGKVGDAR+PHPSHWGRVCFLSTPDGENCGL+KN+S  GLVS 
Sbjct: 482  PLQTLIDLRRTRQQVLYTGKVGDARHPHPSHWGRVCFLSTPDGENCGLVKNMSLLGLVST 541

Query: 568  STTKSIVPTLFRCGMENLVDNTSTSLSGKYKIFLDGEWVGVCEDSLSFVTKVRRKRRSNP 627
               +S+V  LF CGME L+++TST L GK+K+ L+G+WVG+C DS SFV +++ +RR + 
Sbjct: 542  QGLESVVEMLFTCGMEELMNDTSTPLCGKHKVLLNGDWVGLCADSESFVGELKSRRRQSE 601

Query: 628  FLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRIDKSKGENYTFQSLLDKGIIELI 687
               ++E+KRD+   EVRIF+DAGR+LRPLLVVENL+++ + K   Y F+ LLD+GI+ELI
Sbjct: 602  LPLEMEIKRDKDDNEVRIFTDAGRLLRPLLVVENLHKLKQDKPTQYPFKHLLDQGILELI 661

Query: 688  GTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLLGLSCGLVPFANHDHARRALFQSQ 747
            G EEEEDC  AW IK L+++     Y+HCELD+SFLLG+SC +VPFANHDH +R L+QSQ
Sbjct: 662  GIEEEEDCTTAWGIKQLLKE--PKNYTHCELDLSFLLGVSCAIVPFANHDHGKRVLYQSQ 721

Query: 748  KHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMTADCLGTPGYLSSHTGILPKPEFY 807
            KH  QAIGFS+TN N R DTLS QL YPQ+PLF+T+ ++C             L K   +
Sbjct: 722  KHCQQAIGFSSTNPNIRCDTLSQQLFYPQKPLFKTLASEC-------------LEKEVLF 781

Query: 808  NGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHTRSYKAEVDNKESSEKRRKSDDA 867
            NGQNAIVAVNVHLGYNQEDS+VMN+ASLERGMFRSE  RSYKAEVD K+ SEKR+K D+ 
Sbjct: 782  NGQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQIRSYKAEVDTKD-SEKRKKMDEL 841

Query: 868  INFGKTQSKIGRVDSLDDDGFPYIGANLQSGDIVIGRCAESGADHSIKLKHTEKGMVQKV 927
            + FGKT SKIG+VDSL+DDGFP+IGAN+ +GDIVIGRC ESGADHSIKLKHTE+G+VQKV
Sbjct: 842  VQFGKTYSKIGKVDSLEDDGFPFIGANMSTGDIVIGRCTESGADHSIKLKHTERGIVQKV 901

Query: 928  VLSSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVI 987
            VLSSND+GKN+A VSLRQVRSPCLGDKFSSMHGQKGVLG+LE Q+NFPFTIQGIVPDIVI
Sbjct: 902  VLSSNDEGKNFAAVSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVI 961

Query: 988  NPHAFPSRQTPGQLLEAALGKGIAA------GGSLKY------ATPFSTPSVDAITDQLH 1047
            NPHAFPSRQTPGQLLEAAL KGIA       G S  Y      ATPFSTP V  IT+QLH
Sbjct: 962  NPHAFPSRQTPGQLLEAALSKGIACPIQKKEGSSAAYTKLTRHATPFSTPGVTEITEQLH 1021

Query: 1048 RAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVA 1107
            RAGFSRWG+ERVYNGR+GEMMRSLIFMGPTFYQRL+HM+E+KVKFRNTGPVHPLTRQPVA
Sbjct: 1022 RAGFSRWGNERVYNGRSGEMMRSLIFMGPTFYQRLVHMSENKVKFRNTGPVHPLTRQPVA 1081

Query: 1108 DRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVASVIQRSVAGG 1167
            DRKRFGGI+FGEMERDCLIAHGASANLHERLFTLSDSSQMH+C+KCK  A+VI+R+ + G
Sbjct: 1082 DRKRFGGIRFGEMERDCLIAHGASANLHERLFTLSDSSQMHICRKCKTYANVIERTPSSG 1119

BLAST of PI0004379 vs. ExPASy Swiss-Prot
Match: P38420 (DNA-directed RNA polymerase II subunit 2 OS=Arabidopsis thaliana OX=3702 GN=NRPB2 PE=1 SV=2)

HSP 1 Score: 620.5 bits (1599), Expect = 3.8e-176
Identity = 410/1221 (33.58%), Postives = 632/1221 (51.76%), Query Frame = 0

Query: 31   DDYYSEPVNIH-DLGEAFLKDFCKKSSMAFFNQYGLISHQINSYNDFIKNGIQKAFDFFG 90
            ++Y  EP  +  D  E   ++       A+F + GL+  Q++S+++FI+N +Q+  D   
Sbjct: 4    NEYEPEPQYVEDDDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESA 63

Query: 91   DILVQP--GYDPSKKGDGEWRYASVKFGKVTLDKPKFWGGAASGKEYNMLPRHARLQNMT 150
            DI ++P   ++P  + D       + FG++ L KP      + G+   + P+ ARL+N+T
Sbjct: 64   DIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMM--TESDGETATLFPKAARLRNLT 123

Query: 151  YSSRMKINISLEIYTQKLVSSDKFKTGKDQYVDKEPVEGASDNRDVFIGRLPVMVNSDLC 210
            YS+ + ++++  +           K G     D E V    D   VFIG++P+M+ S  C
Sbjct: 124  YSAPLYVDVTKRV----------IKKGH----DGEEVTETQDFTKVFIGKVPIMLRSSYC 183

Query: 211  WMKDEQKRD------CEFDRG---------------EQICLRRLWI-SNVQGWTVAYRSE 270
             +    ++D      C +D+G               E++    +++    Q    AY  E
Sbjct: 184  TLFQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGE 243

Query: 271  VK-----RNR----LIIRLVENSKSEDLKSKEKV-LNVYFLSTEVPVWIY--SLHLVDDP 330
            V+     +NR    + +R++  + ++   S + +   + ++ TE+P+ I   +L  V D 
Sbjct: 244  VRSMAENQNRPPSTMFVRMLARASAKGGSSGQYIRCTLPYIRTEIPIIIVFRALGFVADK 303

Query: 331  TVL-------------NILFASVRE---VDNDDKWKDF--RRG-------KRALTFLDNE 390
             +L              +L  S+ E   + N     D+  +RG       ++ + +  + 
Sbjct: 304  DILEHICYDFADTQMMELLRPSLEEAFVIQNQLVALDYIGKRGATVGVTKEKRIKYARDI 363

Query: 391  IRKTSFPPAEKIEDCLNLYLFASLKGLKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNK 450
            ++K   P     E C             +K ++ GY++  LL    GRR  D+RD + NK
Sbjct: 364  LQKEMLPHVGIGEHCET-----------KKAYYFGYIIHRLLLCALGRRPEDDRDHYGNK 423

Query: 451  RFELAAELLERELKVHIAHARRRMEKALQRDLYGDRQVRPIEHYLDASIITNGLSRAFST 510
            R +LA  LL    ++      R +   +Q+ +   ++V  ++  + A  IT+GL  + +T
Sbjct: 424  RLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVN-LQFAIKAKTITSGLKYSLAT 483

Query: 511  GAWAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVC 570
            G W  A     R +GV   L R     T++ LRR    +   GK+   R  H S WG +C
Sbjct: 484  GNWGQANAAGTR-AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 543

Query: 571  FLSTPDGENCGLIKNLSGTGLVSL-STTKSIVPTLFRCGMENLVDNTSTSLSGKYKIFLD 630
               TP+G+ CGL+KNL+    +++ S    I+  L   G EN  + + + +    KIF++
Sbjct: 544  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPSVIPQATKIFVN 603

Query: 631  GEWVGVCEDSLSFVTKVRRKRRSNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENL 690
            G WVGV  D    V  +RR RR      +V V RD +LKE+RI++D GR  RPL +V+N 
Sbjct: 604  GMWVGVHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDNQ 663

Query: 691  NRIDKSK----------GENYTFQSLLDKGIIELIGTEEEEDCRVAWSIKHLM------E 750
              + K +           E   +  L+ KG IE I TEEEE   ++ +I  L+      E
Sbjct: 664  KLLIKKRDIYALQQRESAEEDGWHHLVAKGFIEYIDTEEEETTMISMTISDLVQARLRPE 723

Query: 751  DEGTTKYSHCELDMSFLLGLSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRVD 810
            +  T  Y+HCE+  S +LG+   ++PF +H+ + R  +QS     QA+G   TN  FR+D
Sbjct: 724  EAYTENYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM-GKQAMGIYVTNYQFRMD 783

Query: 811  TLSHQLHYPQRPLFRTMTADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGYNQED 870
            TL++ L+YPQ+PL  T   + L        H   LP      G NAIVA++ + GYNQED
Sbjct: 784  TLAYVLYYPQKPLVTTRAMEHL--------HFRQLPA-----GINAIVAISCYSGYNQED 843

Query: 871  SLVMNRASLERGMFRSEHTRSYKAEVDNKESSEKRRKSDDAINFGKTQS-KIGRVDSLDD 930
            S++MN++S++RG FRS   RSY+ E   K+     ++     + G T   + G  D LDD
Sbjct: 844  SVIMNQSSIDRGFFRSLFFRSYRDE--EKKMGTLVKEDFGRPDRGSTMGMRHGSYDKLDD 903

Query: 931  DGFPYIGANLQSGDIVIGRCAE-------------SGADHSIKLKHTEKGMVQKVVLSSN 990
            DG    G  +   D++IG+                +  DHSI L+H+E GMV +V+L++N
Sbjct: 904  DGLAPPGTRVSGEDVIIGKTTPISQDEAQGQSSRYTRRDHSISLRHSETGMVDQVLLTTN 963

Query: 991  DDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAF 1050
             DG  +  V +R VR P +GDKFSS HGQKG +G   +QE+ P+TI+G+ PDI++NPHA 
Sbjct: 964  ADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGVTPDIIVNPHAI 1023

Query: 1051 PSRQTPGQLLEAALGKGIAAGGSLKYATPFSTPSVDAITDQLHRAGFSRWGSERVYNGRT 1110
            PSR T GQL+E  +GK  A  G    ATPF+  +VD I+  LH+ G+   G ER+YNG T
Sbjct: 1024 PSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFERMYNGHT 1083

Query: 1111 GEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDC 1159
            G  + ++IF+GPT+YQRL HM +DK+  R  GPV  LTRQP   R R GG++FGEMERDC
Sbjct: 1084 GRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDC 1143

BLAST of PI0004379 vs. ExPASy Swiss-Prot
Match: Q42877 (DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum OX=4081 GN=RPB2 PE=2 SV=1)

HSP 1 Score: 617.1 bits (1590), Expect = 4.2e-175
Identity = 403/1223 (32.95%), Postives = 627/1223 (51.27%), Query Frame = 0

Query: 29   DDDDYYSEPVNIHDLGEAFLKDFCKKSSMAFFNQYGLISHQINSYNDFIKNGIQKAFDFF 88
            D +D Y    N+ D  E   ++       A+F + GL+  Q++S+++FI+N +Q+  D  
Sbjct: 2    DMEDEYEPQYNVDDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES 61

Query: 89   GDILVQP--GYDPSKKGDGEWRYASVKFGKVTLDKPKFWGGAASGKEYNMLPRHARLQNM 148
             DI ++P   ++P  + D       + FG++ L KP      + G+   + P+ ARL+N+
Sbjct: 62   ADIEIRPESQHNPGHQSDFAETIYKINFGQIYLSKPMM--TESDGETATLFPKAARLRNL 121

Query: 149  TYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVDKEPVEGASDNRDVFIGRLPVMVNSDL 208
            TYS+ + ++++  +           K G     D E V    D   VFIG++P+M+ S  
Sbjct: 122  TYSAPLYVDVTKRV----------IKKGH----DGEEVTETQDFTKVFIGKVPIMLRSSY 181

Query: 209  CWMKDEQKRD------CEFDRG---------------EQICLRRLWI-SNVQGWTVAYRS 268
            C +    ++D      C  D+G               E++    +++    Q    A+ +
Sbjct: 182  CTLYQNSEKDLTELGECPLDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVA 241

Query: 269  EVK-----RNR----LIIRLVENSKSEDLKSKEKV-LNVYFLSTEVPVWI---------- 328
            EV+     +NR    + +R++  + ++   S + +   + ++ TE+P+ I          
Sbjct: 242  EVRSMADTQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVAD 301

Query: 329  -----YSLHLVDDPTVLNILFASVRE---VDNDDKWKDF--RRG-------KRALTFLDN 388
                 +  +  +D  ++ +L  S+ E   + N     D+  +RG       ++ + +   
Sbjct: 302  KDILEHICYDFNDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKE 361

Query: 389  EIRKTSFPPAEKIEDCLNLYLFASLKGLKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRN 448
             ++K   P     E C             +K ++ GY++  LL    GRR  D+RD + N
Sbjct: 362  ILQKEMLPHVGVGEYCET-----------KKAYYFGYIIHRLLLCALGRRAEDDRDHYGN 421

Query: 449  KRFELAAELLERELKVHIAHARRRMEKALQRDLYGDRQVRPIEHYLDASIITNGLSRAFS 508
            KR +LA  LL    ++      R +   +Q+ +   + V  ++  + A  IT+GL  + +
Sbjct: 422  KRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVN-LQFAIKAKTITSGLKYSLA 481

Query: 509  TGAWAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRV 568
            TG W  A     R +GV   L R     T++ LRR    +   GK+   R  H S WG +
Sbjct: 482  TGNWGQANAAGTR-AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMM 541

Query: 569  CFLSTPDGENCGLIKNLSGTGLVSL-STTKSIVPTLFRCGMENLVDNTSTSLSGKYKIFL 628
            C   TP+G+ CGL+KNL+    +++ S    I+  L   G EN  + +   +    KIF+
Sbjct: 542  CPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFV 601

Query: 629  DGEWVGVCEDSLSFVTKVRRKRRSNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVEN 688
            +G WVG+  D    V  +RR RR      +V V RD +LKE+RI++D GR  RPL +VE 
Sbjct: 602  NGTWVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK 661

Query: 689  LNRIDKSKG----------ENYTFQSLLDKGIIELIGTEEEEDCRVAWSIKHLME----- 748
               + K K           +   +  L+ KG IE I TEEEE   ++ +I  L++     
Sbjct: 662  QRLMIKKKDIQTLQQRESPDEGGWHDLVAKGYIEYIDTEEEETTMISMTINDLVQARLNP 721

Query: 749  -DEGTTKYSHCELDMSFLLGLSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRV 808
             D  +  Y+HCE+  S +LG+   ++PF +H+ + R  +QS     QA+G   TN  FR+
Sbjct: 722  GDAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM-GKQAMGIYVTNYQFRM 781

Query: 809  DTLSHQLHYPQRPLFRTMTADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGYNQE 868
            DTL++ L+YPQ+PL  T   + L        H   LP      G NAIVA++ + GYNQE
Sbjct: 782  DTLAYVLYYPQKPLVTTRAMEHL--------HFRQLPA-----GINAIVAISCYSGYNQE 841

Query: 869  DSLVMNRASLERGMFRSEHTRSYKAEVDNKES--SEKRRKSDDAINFGKTQSKIGRVDSL 928
            DS++MN++S++RG FRS   RSY+ E     +   E   + D A   G    + G  D L
Sbjct: 842  DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRASTMG---MRHGSYDKL 901

Query: 929  DDDGFPYIGANLQSGDIVIGRCAE-------------SGADHSIKLKHTEKGMVQKVVLS 988
            DDDG    G  +   D++IG+                +  DHS  L+H+E GMV +V+L+
Sbjct: 902  DDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTSLRHSETGMVDQVLLT 961

Query: 989  SNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPH 1048
            +N DG  +  V +R VR P +GDKFSS HGQKG +G   +QE+ P+T++GI PDI++NPH
Sbjct: 962  TNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPH 1021

Query: 1049 AFPSRQTPGQLLEAALGKGIAAGGSLKYATPFSTPSVDAITDQLHRAGFSRWGSERVYNG 1108
            A PSR T GQL+E  +GK  A  G    ATPF+  +VD I+  LH+ G+   G E +YNG
Sbjct: 1022 AIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNG 1081

Query: 1109 RTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMER 1159
             TG  + ++IF+GPT+YQRL HM +DK+  R  GPV  LTRQP   R R GG++FGEMER
Sbjct: 1082 HTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMER 1141

BLAST of PI0004379 vs. ExPASy Swiss-Prot
Match: Q54J75 (DNA-directed RNA polymerase II subunit rpb2 OS=Dictyostelium discoideum OX=44689 GN=polr2b PE=3 SV=1)

HSP 1 Score: 585.1 bits (1507), Expect = 1.7e-165
Identity = 391/1191 (32.83%), Postives = 616/1191 (51.72%), Query Frame = 0

Query: 58   AFFNQYGLISHQINSYNDFIKNGIQKAFDFFGDILVQPGYDPSKKGDGEWRYA------S 117
            A+F + GL+  Q++S+++FI+N +Q+  D    I ++P    S+   G+   +      S
Sbjct: 29   AYFQEKGLVRQQLDSFDEFIQNTMQEIIDESPPITLRP---ESQHHPGQAVVSNNVSTFS 88

Query: 118  VKFGKVTLDKPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKF 177
            VKFG++ L KP        G    + P  AR++N+TYS+ + ++I+  + T      D+ 
Sbjct: 89   VKFGQIYLSKPT---AEIDGVSQQVTPNQARIRNLTYSAPLFVDITKTVMTGSKSKGDER 148

Query: 178  KTGKDQYVDKEPVEGASDNRDVFIGRLPVMVNSDLCWMKDEQKRD------CEFDRG--- 237
            +T  D+ + +           +FIG++P+M+ S  C + +   RD      C FD+G   
Sbjct: 149  RT--DEVLKR-----------IFIGKVPIMLRSQYCMLNEADDRDLTTMGECSFDQGGYF 208

Query: 238  -----EQICLRRLWISNVQGWT--------VAYRSEVK---------RNRLIIRLVENSK 297
                 E++ + +  ++N   +          +Y +E++          + + ++++ N+ 
Sbjct: 209  IINGSEKVLIAQEKMNNNHVYVFKKSPPSKYSYVAEIRSCQETGSRPTSTMYLKMLHNTN 268

Query: 298  SEDLKSKEKVLNVYFLSTEVPVWIY--SLHLVDDPTVL-------------NILFASVRE 357
               +  K     V ++  +VPV I   +L  V D  +L             +++  S+ E
Sbjct: 269  KGPVGIK---ATVPYIKQDVPVIIVFRALGFVADKDILEHICYDFKDAQMMDLMRPSLEE 328

Query: 358  ---VDNDDKWKDFRRGKRALTFLDNEIRKTSFPPAEKIEDCLNLYLFASLKGLKQKCHFL 417
               + + +   D+  GKR  T    E ++  F      ++ L     A     K K  + 
Sbjct: 329  SFVIQSQEVALDY-LGKRGSTMGTRE-QRIKFAREVLQKEMLPHVSVAEFYETK-KAFYF 388

Query: 418  GYMVKCLLQAYTGRRKCDNRDDFRNKRFELAAELLERELKVHIAHARRRMEKALQRDLYG 477
            GY+   LL A   RR  D+RD F NKR +LA  LL    +       + +   LQR +  
Sbjct: 389  GYITHRLLLASLERRPLDDRDHFANKRLDLAGPLLGTLFRQLFKKLTKDVRLYLQRCIDK 448

Query: 478  DRQVRPIEHYLDASIITNGLSRAFSTGAWAHAFKRMERISGVVATLGRANPLQTMAELRR 537
            D++       + +  IT+GL  + +TG W  + K     SGV   L R     T++ LRR
Sbjct: 449  DKEF-IASSAVKSKTITSGLKYSLATGNWGSS-KSGGTKSGVAQVLNRLTFASTLSHLRR 508

Query: 538  TRQQVAYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLIKNLSGTGLVSL-STTKSIVPT 597
                +   GK+   R  H +HWG VC   TP+G+ CGL+KNL+    +S+ S ++ I+  
Sbjct: 509  LNTPIGREGKLAKPRQLHNTHWGIVCPSETPEGQACGLVKNLAMMSYISVGSASQPILEF 568

Query: 598  LFRCGMENLVD-NTSTSLSGKYKIFLDGEWVGVCEDSLSFVTKVRRKRRSNPFLHQVEVK 657
            L     ENL + +  +S+    KIF++G WVG+       ++ +R  RR      +V V 
Sbjct: 569  LEEWTTENLEEISDLSSIFSATKIFVNGMWVGIHHQPDKLLSTLRLLRRCGDVSVEVSVV 628

Query: 658  RDEQLKEVRIFSDAGRILRPLLVVENLNRIDKSK--------GENYTFQSLLDKGIIELI 717
            RD + KE+R+++D GR  RPL VV++ N++   K         + Y +Q LL +GI+E I
Sbjct: 629  RDIREKELRLYTDPGRCCRPLFVVQD-NKVQIKKQHINKLINNDEYKWQDLLSEGIVEYI 688

Query: 718  GTEEEEDCRVAWSIKHLM---EDEGTTKYSHCELDMSFLLGLSCGLVPFANHDHARRALF 777
              EEEE   +A + + L+    ++    Y+HCE+  S +LG+ C ++PF +H+ + R  +
Sbjct: 689  DAEEEETVLIAMTPEDLVPMPNEQIVHTYTHCEIHPSMILGICCSIIPFPDHNQSPRNTY 748

Query: 778  QSQKHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMTADCLGTPGYLSSHTGILPKP 837
            Q+     QA+G   TN   R+DT++H L YPQ+PL  T + + L        H   LP  
Sbjct: 749  QAAM-GKQAMGVYITNYQLRMDTMAHVLFYPQKPLVTTRSMEYL--------HFRELPA- 808

Query: 838  EFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHTRSYKAEVDNKESSEKRRKS 897
                GQN  VA+  + GYNQEDS+++N+++++RG+FRS   R+YK E   K++S      
Sbjct: 809  ----GQNVCVAIACYSGYNQEDSVILNQSAIDRGLFRSMFYRAYKDE-QKKQTSLMEEVF 868

Query: 898  DDAINFGKTQSKIGRVDSLDDDGFPYIGANLQSGDIVIGRCA---------------ESG 957
            +          + G  + +DDDG    G  +   DI+IG+                  + 
Sbjct: 869  EKPERDTCAGMRHGSYEKIDDDGLVAPGVRVAGDDIIIGKTTPLPPSDDDLGPKTRRHTK 928

Query: 958  ADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLE 1017
             D S  L+ +E G+V +V+L+++ +G  +  V +R +R P +GDKFSS HGQKG  G   
Sbjct: 929  RDSSTALRSSETGIVDQVILTTSGEGFKFCKVRVRSMRVPQIGDKFSSRHGQKGTCGMAY 988

Query: 1018 SQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAGGSLKYATPFSTPSVDA 1077
             QE+ PFT++GIVPDI++NPHA PSR T GQL+E  LGK  A+ G    ATPF+  +V+A
Sbjct: 989  RQEDLPFTVEGIVPDIIVNPHAIPSRMTIGQLIECLLGKVSASTGDEGDATPFTDVTVEA 1048

Query: 1078 ITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPL 1137
            I+  LH+ G+   G E +YNG TG  M + IF+GPT+YQRL HM +DK+  R+ GPV  L
Sbjct: 1049 ISQALHKIGYQMTGHEVMYNGHTGRRMDAQIFIGPTYYQRLKHMVDDKIHSRSRGPVQIL 1108

Query: 1138 TRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVASVIQ 1166
            TRQPV  R R GG++FGEMERDC+I+HGA+  L ERLF  SDS ++H+C  C  +A    
Sbjct: 1109 TRQPVEGRSRDGGLRFGEMERDCMISHGAAQFLKERLFDQSDSYRVHICDICGLIA---- 1168

BLAST of PI0004379 vs. ExPASy TrEMBL
Match: A0A5D3D8Y5 (DNA-directed RNA polymerase subunit beta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G001250 PE=3 SV=1)

HSP 1 Score: 2321.6 bits (6015), Expect = 0.0e+00
Identity = 1150/1197 (96.07%), Postives = 1156/1197 (96.57%), Query Frame = 0

Query: 1    MGTSGTKDDIEMNSEGEDLSPGMDLDTDDDDDYYSEPVNIHDLGEAFLKDFCKKSSMAFF 60
            MGTSGTKDDIEMNSEGEDLSPGMDLDTDDDDDYYSEPVNI+DLGEAFLKDFCKKSSMAFF
Sbjct: 1    MGTSGTKDDIEMNSEGEDLSPGMDLDTDDDDDYYSEPVNINDLGEAFLKDFCKKSSMAFF 60

Query: 61   NQYGLISHQINSYNDFIKNGIQKAFDFFGDILVQPGYDPSKKGDGEWRYASVKFGKVTLD 120
            NQYGLISHQINSYNDFIKNG+QKAFDFFGDILVQPGYDPSKKGDGEWRYASVKFGKVTLD
Sbjct: 61   NQYGLISHQINSYNDFIKNGVQKAFDFFGDILVQPGYDPSKKGDGEWRYASVKFGKVTLD 120

Query: 121  KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVD 180
            KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVD
Sbjct: 121  KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVD 180

Query: 181  KEPVEGASDNRDVFIGRLPVMVNSDLCWMKDEQKRDCEFDRG---------------EQI 240
            KEPVEGASDNRDVFIGRLPVMVNSDLCWMKDEQKRDCEFDRG               EQI
Sbjct: 181  KEPVEGASDNRDVFIGRLPVMVNSDLCWMKDEQKRDCEFDRGGYFLIKGAEKIFIAQEQI 240

Query: 241  CLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWIY 300
            CLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWI 
Sbjct: 241  CLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWIL 300

Query: 301  SLHL---------------VDDPTVLNILFASVREVDNDDKWKDFRRGKRALTFLDNEIR 360
               L                DDPTVLNILFASVREVDNDDKWKDFRRGKRALTFLDNEIR
Sbjct: 301  FFALGVSSDKEIVDLIDYGRDDPTVLNILFASVREVDNDDKWKDFRRGKRALTFLDNEIR 360

Query: 361  KTSFPPAEKIEDCLNLYLFASLKGLKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKRF 420
            KTSFPPAEKIEDCLNLYLFASLKGLKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKRF
Sbjct: 361  KTSFPPAEKIEDCLNLYLFASLKGLKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKRF 420

Query: 421  ELAAELLERELKVHIAHARRRMEKALQRDLYGDRQVRPIEHYLDASIITNGLSRAFSTGA 480
            ELAAELLERELKVHIAHARRRMEKALQRDLYGDRQVRPIEHYLDASIITNGLSRAFSTGA
Sbjct: 421  ELAAELLERELKVHIAHARRRMEKALQRDLYGDRQVRPIEHYLDASIITNGLSRAFSTGA 480

Query: 481  WAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFL 540
            WAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFL
Sbjct: 481  WAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFL 540

Query: 541  STPDGENCGLIKNLSGTGLVSLSTTKSIVPTLFRCGMENLVDNTSTSLSGKYKIFLDGEW 600
            STPDGENCGLIKNLSGTGLVSL+TTK I+PTLF CGMENL DNTSTSL GKY+IFLDGEW
Sbjct: 541  STPDGENCGLIKNLSGTGLVSLNTTKPIIPTLFCCGMENLADNTSTSLCGKYRIFLDGEW 600

Query: 601  VGVCEDSLSFVTKVRRKRRSNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRI 660
            VGVCEDSLSFVTKVRRKRR NPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRI
Sbjct: 601  VGVCEDSLSFVTKVRRKRRRNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRI 660

Query: 661  DKSKGENYTFQSLLDKGIIELIGTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLLG 720
            DKSKGENYTFQSLLDKGIIEL+GTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLLG
Sbjct: 661  DKSKGENYTFQSLLDKGIIELVGTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLLG 720

Query: 721  LSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMTA 780
            LSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMTA
Sbjct: 721  LSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMTA 780

Query: 781  DCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHT 840
            DCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHT
Sbjct: 781  DCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHT 840

Query: 841  RSYKAEVDNKESSEKRRKSDDAINFGKTQSKIGRVDSLDDDGFPYIGANLQSGDIVIGRC 900
            RSYKAEVDNKESSEKRRKSDD INFGKTQSKIGRVDSLDDDGFPYIGANLQSGDIVIGRC
Sbjct: 841  RSYKAEVDNKESSEKRRKSDDTINFGKTQSKIGRVDSLDDDGFPYIGANLQSGDIVIGRC 900

Query: 901  AESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVL 960
            AESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVL
Sbjct: 901  AESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVL 960

Query: 961  GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAGGSLKYATPFSTP 1020
            GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAGGSLKYATPFSTP
Sbjct: 961  GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAGGSLKYATPFSTP 1020

Query: 1021 SVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGP 1080
            SVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGP
Sbjct: 1021 SVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGP 1080

Query: 1081 VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVA 1140
            VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVA
Sbjct: 1081 VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVA 1140

Query: 1141 SVIQRSVAGGRKIRGPYCRVCESVDDIVRVNVPYGAKLLCQELFSMGINLKFETQLC 1168
            SVIQRSVAGGRKIRGPYCRVCESVDDIVRVNVPYGAKLLCQELFSMGINLKFETQLC
Sbjct: 1141 SVIQRSVAGGRKIRGPYCRVCESVDDIVRVNVPYGAKLLCQELFSMGINLKFETQLC 1197

BLAST of PI0004379 vs. ExPASy TrEMBL
Match: A0A1S3BUT1 (DNA-directed RNA polymerase subunit beta OS=Cucumis melo OX=3656 GN=LOC103493748 PE=3 SV=1)

HSP 1 Score: 2321.6 bits (6015), Expect = 0.0e+00
Identity = 1150/1197 (96.07%), Postives = 1156/1197 (96.57%), Query Frame = 0

Query: 1    MGTSGTKDDIEMNSEGEDLSPGMDLDTDDDDDYYSEPVNIHDLGEAFLKDFCKKSSMAFF 60
            MGTSGTKDDIEMNSEGEDLSPGMDLDTDDDDDYYSEPVNI+DLGEAFLKDFCKKSSMAFF
Sbjct: 1    MGTSGTKDDIEMNSEGEDLSPGMDLDTDDDDDYYSEPVNINDLGEAFLKDFCKKSSMAFF 60

Query: 61   NQYGLISHQINSYNDFIKNGIQKAFDFFGDILVQPGYDPSKKGDGEWRYASVKFGKVTLD 120
            NQYGLISHQINSYNDFIKNG+QKAFDFFGDILVQPGYDPSKKGDGEWRYASVKFGKVTLD
Sbjct: 61   NQYGLISHQINSYNDFIKNGVQKAFDFFGDILVQPGYDPSKKGDGEWRYASVKFGKVTLD 120

Query: 121  KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVD 180
            KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVD
Sbjct: 121  KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVD 180

Query: 181  KEPVEGASDNRDVFIGRLPVMVNSDLCWMKDEQKRDCEFDRG---------------EQI 240
            KEPVEGASDNRDVFIGRLPVMVNSDLCWMKDEQKRDCEFDRG               EQI
Sbjct: 181  KEPVEGASDNRDVFIGRLPVMVNSDLCWMKDEQKRDCEFDRGGYFLIKGAEKIFIAQEQI 240

Query: 241  CLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWIY 300
            CLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWI 
Sbjct: 241  CLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWIL 300

Query: 301  SLHL---------------VDDPTVLNILFASVREVDNDDKWKDFRRGKRALTFLDNEIR 360
               L                DDPTVLNILFASVREVDNDDKWKDFRRGKRALTFLDNEIR
Sbjct: 301  FFALGVSSDKEIVDLIDYGRDDPTVLNILFASVREVDNDDKWKDFRRGKRALTFLDNEIR 360

Query: 361  KTSFPPAEKIEDCLNLYLFASLKGLKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKRF 420
            KTSFPPAEKIEDCLNLYLFASLKGLKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKRF
Sbjct: 361  KTSFPPAEKIEDCLNLYLFASLKGLKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKRF 420

Query: 421  ELAAELLERELKVHIAHARRRMEKALQRDLYGDRQVRPIEHYLDASIITNGLSRAFSTGA 480
            ELAAELLERELKVHIAHARRRMEKALQRDLYGDRQVRPIEHYLDASIITNGLSRAFSTGA
Sbjct: 421  ELAAELLERELKVHIAHARRRMEKALQRDLYGDRQVRPIEHYLDASIITNGLSRAFSTGA 480

Query: 481  WAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFL 540
            WAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFL
Sbjct: 481  WAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFL 540

Query: 541  STPDGENCGLIKNLSGTGLVSLSTTKSIVPTLFRCGMENLVDNTSTSLSGKYKIFLDGEW 600
            STPDGENCGLIKNLSGTGLVSL+TTK I+PTLF CGMENL DNTSTSL GKY+IFLDGEW
Sbjct: 541  STPDGENCGLIKNLSGTGLVSLNTTKPIIPTLFCCGMENLADNTSTSLCGKYRIFLDGEW 600

Query: 601  VGVCEDSLSFVTKVRRKRRSNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRI 660
            VGVCEDSLSFVTKVRRKRR NPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRI
Sbjct: 601  VGVCEDSLSFVTKVRRKRRRNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRI 660

Query: 661  DKSKGENYTFQSLLDKGIIELIGTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLLG 720
            DKSKGENYTFQSLLDKGIIEL+GTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLLG
Sbjct: 661  DKSKGENYTFQSLLDKGIIELVGTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLLG 720

Query: 721  LSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMTA 780
            LSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMTA
Sbjct: 721  LSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMTA 780

Query: 781  DCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHT 840
            DCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHT
Sbjct: 781  DCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHT 840

Query: 841  RSYKAEVDNKESSEKRRKSDDAINFGKTQSKIGRVDSLDDDGFPYIGANLQSGDIVIGRC 900
            RSYKAEVDNKESSEKRRKSDD INFGKTQSKIGRVDSLDDDGFPYIGANLQSGDIVIGRC
Sbjct: 841  RSYKAEVDNKESSEKRRKSDDTINFGKTQSKIGRVDSLDDDGFPYIGANLQSGDIVIGRC 900

Query: 901  AESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVL 960
            AESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVL
Sbjct: 901  AESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVL 960

Query: 961  GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAGGSLKYATPFSTP 1020
            GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAGGSLKYATPFSTP
Sbjct: 961  GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAGGSLKYATPFSTP 1020

Query: 1021 SVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGP 1080
            SVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGP
Sbjct: 1021 SVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGP 1080

Query: 1081 VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVA 1140
            VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVA
Sbjct: 1081 VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVA 1140

Query: 1141 SVIQRSVAGGRKIRGPYCRVCESVDDIVRVNVPYGAKLLCQELFSMGINLKFETQLC 1168
            SVIQRSVAGGRKIRGPYCRVCESVDDIVRVNVPYGAKLLCQELFSMGINLKFETQLC
Sbjct: 1141 SVIQRSVAGGRKIRGPYCRVCESVDDIVRVNVPYGAKLLCQELFSMGINLKFETQLC 1197

BLAST of PI0004379 vs. ExPASy TrEMBL
Match: A0A0A0L319 (DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=Csa_4G651950 PE=3 SV=1)

HSP 1 Score: 2305.4 bits (5973), Expect = 0.0e+00
Identity = 1143/1197 (95.49%), Postives = 1148/1197 (95.91%), Query Frame = 0

Query: 1    MGTSGTKDDIEMNSEGEDLSPGMDLDTDDDDDYYSEPVNIHDLGEAFLKDFCKKSSMAFF 60
            MGTSG KDDIEMNSEGEDLSPGMDLDTDDDDDYYSEPVNIHDLGEAFLKDFCKKSSMAFF
Sbjct: 1    MGTSGAKDDIEMNSEGEDLSPGMDLDTDDDDDYYSEPVNIHDLGEAFLKDFCKKSSMAFF 60

Query: 61   NQYGLISHQINSYNDFIKNGIQKAFDFFGDILVQPGYDPSKKGDGEWRYASVKFGKVTLD 120
            NQYGLISHQINSYNDFIKNGIQKAFDFFGDILVQPGYDPSKKGDGEWRYA+VKFGKVTLD
Sbjct: 61   NQYGLISHQINSYNDFIKNGIQKAFDFFGDILVQPGYDPSKKGDGEWRYATVKFGKVTLD 120

Query: 121  KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVD 180
            KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVD
Sbjct: 121  KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVD 180

Query: 181  KEPVEGASDNRDVFIGRLPVMVNSDLCWMKDEQKRDCEFDRG---------------EQI 240
            KEPVEGASDNRDVFIGRLPVMVNSDLCWMKD QKRDCEFDRG               EQI
Sbjct: 181  KEPVEGASDNRDVFIGRLPVMVNSDLCWMKDGQKRDCEFDRGGYFLIKGAEKIFIAQEQI 240

Query: 241  CLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWIY 300
            CLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWI 
Sbjct: 241  CLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWIL 300

Query: 301  SLHL---------------VDDPTVLNILFASVREVDNDDKWKDFRRGKRALTFLDNEIR 360
               L                DDPTVLNILFASVREVDNDDKWKDFRRGKRALTFLDNEIR
Sbjct: 301  FFALGVSSDKEIVDLIDYGRDDPTVLNILFASVREVDNDDKWKDFRRGKRALTFLDNEIR 360

Query: 361  KTSFPPAEKIEDCLNLYLFASLKGLKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKRF 420
            KTSFPPA+KIEDCLNLYLFASLKG KQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKRF
Sbjct: 361  KTSFPPADKIEDCLNLYLFASLKGSKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKRF 420

Query: 421  ELAAELLERELKVHIAHARRRMEKALQRDLYGDRQVRPIEHYLDASIITNGLSRAFSTGA 480
            ELAAELLERELKVHIAHARRRMEKALQRDLYGDRQV PIEHYLDASIITNGLSRAFSTGA
Sbjct: 421  ELAAELLERELKVHIAHARRRMEKALQRDLYGDRQVHPIEHYLDASIITNGLSRAFSTGA 480

Query: 481  WAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFL 540
            WAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFL
Sbjct: 481  WAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFL 540

Query: 541  STPDGENCGLIKNLSGTGLVSLSTTKSIVPTLFRCGMENLVDNTSTSLSGKYKIFLDGEW 600
            STPDGENCGLIKNLSGTGLVSL+T KSI PTLFRCGMENLVDNTSTS  GKY+IFLDGEW
Sbjct: 541  STPDGENCGLIKNLSGTGLVSLNTKKSITPTLFRCGMENLVDNTSTSFCGKYRIFLDGEW 600

Query: 601  VGVCEDSLSFVTKVRRKRRSNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRI 660
            VGVCEDSLSFVT VRRKRR NPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRI
Sbjct: 601  VGVCEDSLSFVTNVRRKRRRNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRI 660

Query: 661  DKSKGENYTFQSLLDKGIIELIGTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLLG 720
            DKSKGENYTFQSLLDKGIIELIGTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLLG
Sbjct: 661  DKSKGENYTFQSLLDKGIIELIGTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLLG 720

Query: 721  LSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMTA 780
            LSCGLVPFANHDHARRALFQSQKHSNQAIGFS TNSNFRVDTLSHQLHYPQRPLFRTMTA
Sbjct: 721  LSCGLVPFANHDHARRALFQSQKHSNQAIGFSPTNSNFRVDTLSHQLHYPQRPLFRTMTA 780

Query: 781  DCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHT 840
            DCLGTPGYLSSH GILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEH 
Sbjct: 781  DCLGTPGYLSSHAGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHI 840

Query: 841  RSYKAEVDNKESSEKRRKSDDAINFGKTQSKIGRVDSLDDDGFPYIGANLQSGDIVIGRC 900
            RSYKAEVDNKESSEKRRKSDDAINFGKTQSKIGRVDSLDDDGFPYIGANLQSGDIVIGRC
Sbjct: 841  RSYKAEVDNKESSEKRRKSDDAINFGKTQSKIGRVDSLDDDGFPYIGANLQSGDIVIGRC 900

Query: 901  AESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVL 960
            AESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVL
Sbjct: 901  AESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVL 960

Query: 961  GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAGGSLKYATPFSTP 1020
            GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAGGSLKYATPFSTP
Sbjct: 961  GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAGGSLKYATPFSTP 1020

Query: 1021 SVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGP 1080
            SVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGP
Sbjct: 1021 SVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGP 1080

Query: 1081 VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVA 1140
            VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVA
Sbjct: 1081 VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVA 1140

Query: 1141 SVIQRSVAGGRKIRGPYCRVCESVDDIVRVNVPYGAKLLCQELFSMGINLKFETQLC 1168
            SVIQRSVAGGRK+RGPYCRVCES DDIVRVNVPYGAKLLCQELFSMGINLKFETQLC
Sbjct: 1141 SVIQRSVAGGRKMRGPYCRVCESFDDIVRVNVPYGAKLLCQELFSMGINLKFETQLC 1197

BLAST of PI0004379 vs. ExPASy TrEMBL
Match: A0A6J1FHZ2 (DNA-directed RNA polymerase subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111445938 PE=3 SV=1)

HSP 1 Score: 2215.3 bits (5739), Expect = 0.0e+00
Identity = 1093/1197 (91.31%), Postives = 1136/1197 (94.90%), Query Frame = 0

Query: 1    MGTSGTKDDIEMNSEGEDLSPGMDLDTDDDDDYYSEPVNIHDLGEAFLKDFCKKSSMAFF 60
            MGTSG KDDIEMNSE EDLSPG D+DTDDDD  YSEPVNIHDLGE FLKDFCKKSSMAFF
Sbjct: 1    MGTSGAKDDIEMNSEPEDLSPGTDMDTDDDD--YSEPVNIHDLGETFLKDFCKKSSMAFF 60

Query: 61   NQYGLISHQINSYNDFIKNGIQKAFDFFGDILVQPGYDPSKKGDGEWRYASVKFGKVTLD 120
            N+YGLISHQ+NSYNDFIK+GIQK+FD+FG+I+VQPGYDPSKKGDGEWRYASVKFGKVTLD
Sbjct: 61   NEYGLISHQLNSYNDFIKSGIQKSFDYFGEIVVQPGYDPSKKGDGEWRYASVKFGKVTLD 120

Query: 121  KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVD 180
            KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMK+NI++E+YTQ+LV SDKFKTG+DQYVD
Sbjct: 121  KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKMNINVEVYTQRLVRSDKFKTGQDQYVD 180

Query: 181  KEPVEGASDNRDVFIGRLPVMVNSDLCWMKDEQKRDCEFDRG---------------EQI 240
            K+ +  + DNRD+FIGRLPVMVNSDLCWMKD+QKRDCEFD G               EQI
Sbjct: 181  KDLL--SQDNRDIFIGRLPVMVNSDLCWMKDDQKRDCEFDHGGYFLIKGAEKIFIAQEQI 240

Query: 241  CLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWIY 300
            CLRRLWISN QGWTVAYRSEVKRNRLIIRLVENSKSE+LKSKEKVLNVYFLSTE+PVWI 
Sbjct: 241  CLRRLWISNNQGWTVAYRSEVKRNRLIIRLVENSKSEELKSKEKVLNVYFLSTEIPVWIL 300

Query: 301  -----------SLHLVD----DPTVLNILFASVREVDNDDKWKDFRRGKRALTFLDNEIR 360
                        + L+D    DPTVLNILFASVR VDNDDKWKDFRRGKRAL FL+NE++
Sbjct: 301  FFALGVSSDREIVDLIDFGREDPTVLNILFASVRVVDNDDKWKDFRRGKRALNFLENEVK 360

Query: 361  KTSFPPAEKIEDCLNLYLFASLKGLKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKRF 420
            KTSFPPAEKIEDCLNLYLFASLKGLKQKC FLGYMVKCLLQAYTGRRKCDNRDDFRNKRF
Sbjct: 361  KTSFPPAEKIEDCLNLYLFASLKGLKQKCRFLGYMVKCLLQAYTGRRKCDNRDDFRNKRF 420

Query: 421  ELAAELLERELKVHIAHARRRMEKALQRDLYGDRQVRPIEHYLDASIITNGLSRAFSTGA 480
            ELA ELLERE+KVHIAHARRRMEKALQRDLYGDR VRPIEHY DASIITNGLSRAFSTGA
Sbjct: 421  ELAGELLEREIKVHIAHARRRMEKALQRDLYGDRDVRPIEHYFDASIITNGLSRAFSTGA 480

Query: 481  WAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFL 540
            WAH+FKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFL
Sbjct: 481  WAHSFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFL 540

Query: 541  STPDGENCGLIKNLSGTGLVSLSTTKSIVPTLFRCGMENLVDNTSTSLSGKYKIFLDGEW 600
            STPDGENCGLIKNLS TGLVSL+T K +VPTLFRCGMEN+VD+TSTSLSGK++IFL+GEW
Sbjct: 541  STPDGENCGLIKNLSITGLVSLNTLKPVVPTLFRCGMENVVDDTSTSLSGKHRIFLNGEW 600

Query: 601  VGVCEDSLSFVTKVRRKRRSNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRI 660
            VGVCEDSLSFVTKVRRKRR N  LHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRI
Sbjct: 601  VGVCEDSLSFVTKVRRKRRRNLLLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRI 660

Query: 661  DKSKGENYTFQSLLDKGIIELIGTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLLG 720
            DKSKGE+YTFQSLLDKGIIELIGTEEEEDCR AWSIKHL ED+GT+KY+HCELD SFLLG
Sbjct: 661  DKSKGESYTFQSLLDKGIIELIGTEEEEDCRTAWSIKHLTEDQGTSKYTHCELDTSFLLG 720

Query: 721  LSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMTA 780
            LSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMTA
Sbjct: 721  LSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMTA 780

Query: 781  DCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHT 840
            DCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHT
Sbjct: 781  DCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHT 840

Query: 841  RSYKAEVDNKESSEKRRKSDDAINFGKTQSKIGRVDSLDDDGFPYIGANLQSGDIVIGRC 900
            RSYKAEVDNKESSEKRRKSDDAINFGKTQSKIGRVDSLDDDGFPYIGANLQSGDIVIGRC
Sbjct: 841  RSYKAEVDNKESSEKRRKSDDAINFGKTQSKIGRVDSLDDDGFPYIGANLQSGDIVIGRC 900

Query: 901  AESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVL 960
            AESGADHSIKLKHTEKGMVQKVVLSSNDDGKN+AVVSLRQVRSPCLGDKFSSMHGQKGVL
Sbjct: 901  AESGADHSIKLKHTEKGMVQKVVLSSNDDGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVL 960

Query: 961  GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAGGSLKYATPFSTP 1020
            GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIA+GGSLKYATPFSTP
Sbjct: 961  GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIASGGSLKYATPFSTP 1020

Query: 1021 SVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGP 1080
            SVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGP
Sbjct: 1021 SVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGP 1080

Query: 1081 VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVA 1140
            VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVA
Sbjct: 1081 VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVA 1140

Query: 1141 SVIQRSVAGGRKIRGPYCRVCESVDDIVRVNVPYGAKLLCQELFSMGINLKFETQLC 1168
            +VIQRSVAGGRKIRGPYCRVCESVDDIVRVNVPYGAKLLCQELFSMGINLKFETQ+C
Sbjct: 1141 NVIQRSVAGGRKIRGPYCRVCESVDDIVRVNVPYGAKLLCQELFSMGINLKFETQVC 1193

BLAST of PI0004379 vs. ExPASy TrEMBL
Match: A0A6J1IXN3 (DNA-directed RNA polymerase subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111480863 PE=3 SV=1)

HSP 1 Score: 2210.6 bits (5727), Expect = 0.0e+00
Identity = 1091/1197 (91.14%), Postives = 1135/1197 (94.82%), Query Frame = 0

Query: 1    MGTSGTKDDIEMNSEGEDLSPGMDLDTDDDDDYYSEPVNIHDLGEAFLKDFCKKSSMAFF 60
            MGTSG KDDIEMNSE EDLSPG D+DTDDDD  YSEPVNIHDLGE FLKDFCKKSSMAFF
Sbjct: 1    MGTSGAKDDIEMNSEPEDLSPGTDMDTDDDD--YSEPVNIHDLGEVFLKDFCKKSSMAFF 60

Query: 61   NQYGLISHQINSYNDFIKNGIQKAFDFFGDILVQPGYDPSKKGDGEWRYASVKFGKVTLD 120
            ++YGLISHQ+NSYNDFIK+GIQK+FD+FG+I+VQPGYDPSKKGDGEWRYASVKFGKVTLD
Sbjct: 61   DEYGLISHQLNSYNDFIKSGIQKSFDYFGEIVVQPGYDPSKKGDGEWRYASVKFGKVTLD 120

Query: 121  KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVD 180
            KPKFWGGAASGKEYN+LPRHARLQNMTYSSRMK+NI++E+YTQ+LV SDKFKTG+DQYVD
Sbjct: 121  KPKFWGGAASGKEYNLLPRHARLQNMTYSSRMKMNINVEVYTQRLVRSDKFKTGQDQYVD 180

Query: 181  KEPVEGASDNRDVFIGRLPVMVNSDLCWMKDEQKRDCEFDRG---------------EQI 240
            K+ +  + DNRD+FIGRLPVMVNSDLCWMKD+QKRDCEFD G               EQI
Sbjct: 181  KDLL--SQDNRDIFIGRLPVMVNSDLCWMKDDQKRDCEFDHGGYFLIKGAEKIFIAQEQI 240

Query: 241  CLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWIY 300
            CLRRLWISN QGWTVAYRSEVKRNRLIIRLVENSKSE+LKSKEKVLNVYFLSTE+PVWI 
Sbjct: 241  CLRRLWISNNQGWTVAYRSEVKRNRLIIRLVENSKSEELKSKEKVLNVYFLSTEIPVWIL 300

Query: 301  -----------SLHLVD----DPTVLNILFASVREVDNDDKWKDFRRGKRALTFLDNEIR 360
                        + L+D    DPTVLNILFASVR VDNDDKWKDFRRGKRAL FL+NE++
Sbjct: 301  FFALGVSSDREIVDLIDFGREDPTVLNILFASVRVVDNDDKWKDFRRGKRALNFLENEVK 360

Query: 361  KTSFPPAEKIEDCLNLYLFASLKGLKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKRF 420
            KTSFPPAEKIEDCLNLYLFASLKGLKQKC FLGYMVKCLLQAYTGRRKCDNRDDFRNKRF
Sbjct: 361  KTSFPPAEKIEDCLNLYLFASLKGLKQKCRFLGYMVKCLLQAYTGRRKCDNRDDFRNKRF 420

Query: 421  ELAAELLERELKVHIAHARRRMEKALQRDLYGDRQVRPIEHYLDASIITNGLSRAFSTGA 480
            ELA ELLERE+KVHIAHARRRMEKALQRDLYGDR VRPIEHY DASIITNGLSRAFSTGA
Sbjct: 421  ELAGELLEREIKVHIAHARRRMEKALQRDLYGDRDVRPIEHYFDASIITNGLSRAFSTGA 480

Query: 481  WAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFL 540
            WAH+FKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFL
Sbjct: 481  WAHSFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFL 540

Query: 541  STPDGENCGLIKNLSGTGLVSLSTTKSIVPTLFRCGMENLVDNTSTSLSGKYKIFLDGEW 600
            STPDGENCGLIKNLS TGLVSL+T K +VPTLFRCGMEN+VD+TSTSLSGK+KIFL+GEW
Sbjct: 541  STPDGENCGLIKNLSITGLVSLNTLKPVVPTLFRCGMENVVDDTSTSLSGKHKIFLNGEW 600

Query: 601  VGVCEDSLSFVTKVRRKRRSNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRI 660
            VGVCEDSLSFVTKVR KRR N  LHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRI
Sbjct: 601  VGVCEDSLSFVTKVRLKRRRNLLLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRI 660

Query: 661  DKSKGENYTFQSLLDKGIIELIGTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLLG 720
            DKSKGE+YTFQSLLDKGIIELIGTEEEEDCR AWSIKHL ED+GT+KY+HCELD SFLLG
Sbjct: 661  DKSKGESYTFQSLLDKGIIELIGTEEEEDCRTAWSIKHLTEDQGTSKYTHCELDTSFLLG 720

Query: 721  LSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMTA 780
            LSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMTA
Sbjct: 721  LSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMTA 780

Query: 781  DCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHT 840
            DCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHT
Sbjct: 781  DCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHT 840

Query: 841  RSYKAEVDNKESSEKRRKSDDAINFGKTQSKIGRVDSLDDDGFPYIGANLQSGDIVIGRC 900
            RSYKAEVDNKESSEKRRKSDDAINFGKTQSKIGRVDSLDDDGFPYIGANLQSGDIVIGRC
Sbjct: 841  RSYKAEVDNKESSEKRRKSDDAINFGKTQSKIGRVDSLDDDGFPYIGANLQSGDIVIGRC 900

Query: 901  AESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVL 960
            AESGADHSIKLKHTEKGMVQKVVLSSNDDGKN+AVVSLRQVRSPCLGDKFSSMHGQKGVL
Sbjct: 901  AESGADHSIKLKHTEKGMVQKVVLSSNDDGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVL 960

Query: 961  GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAGGSLKYATPFSTP 1020
            GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIA+GGSLKYATPFSTP
Sbjct: 961  GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIASGGSLKYATPFSTP 1020

Query: 1021 SVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGP 1080
            SVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGP
Sbjct: 1021 SVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGP 1080

Query: 1081 VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVA 1140
            VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVA
Sbjct: 1081 VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVA 1140

Query: 1141 SVIQRSVAGGRKIRGPYCRVCESVDDIVRVNVPYGAKLLCQELFSMGINLKFETQLC 1168
            +VIQRSVAGGRKIRGPYCRVCESVDDIVRVNVPYGAKLLCQELFSMGINLKFETQ+C
Sbjct: 1141 NVIQRSVAGGRKIRGPYCRVCESVDDIVRVNVPYGAKLLCQELFSMGINLKFETQVC 1193

BLAST of PI0004379 vs. NCBI nr
Match: XP_008452849.1 (PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like [Cucumis melo] >KAA0064582.1 DNA-directed RNA polymerases IV and V subunit 2-like [Cucumis melo var. makuwa] >TYK20008.1 DNA-directed RNA polymerases IV and V subunit 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 2321.6 bits (6015), Expect = 0.0e+00
Identity = 1150/1197 (96.07%), Postives = 1156/1197 (96.57%), Query Frame = 0

Query: 1    MGTSGTKDDIEMNSEGEDLSPGMDLDTDDDDDYYSEPVNIHDLGEAFLKDFCKKSSMAFF 60
            MGTSGTKDDIEMNSEGEDLSPGMDLDTDDDDDYYSEPVNI+DLGEAFLKDFCKKSSMAFF
Sbjct: 1    MGTSGTKDDIEMNSEGEDLSPGMDLDTDDDDDYYSEPVNINDLGEAFLKDFCKKSSMAFF 60

Query: 61   NQYGLISHQINSYNDFIKNGIQKAFDFFGDILVQPGYDPSKKGDGEWRYASVKFGKVTLD 120
            NQYGLISHQINSYNDFIKNG+QKAFDFFGDILVQPGYDPSKKGDGEWRYASVKFGKVTLD
Sbjct: 61   NQYGLISHQINSYNDFIKNGVQKAFDFFGDILVQPGYDPSKKGDGEWRYASVKFGKVTLD 120

Query: 121  KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVD 180
            KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVD
Sbjct: 121  KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVD 180

Query: 181  KEPVEGASDNRDVFIGRLPVMVNSDLCWMKDEQKRDCEFDRG---------------EQI 240
            KEPVEGASDNRDVFIGRLPVMVNSDLCWMKDEQKRDCEFDRG               EQI
Sbjct: 181  KEPVEGASDNRDVFIGRLPVMVNSDLCWMKDEQKRDCEFDRGGYFLIKGAEKIFIAQEQI 240

Query: 241  CLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWIY 300
            CLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWI 
Sbjct: 241  CLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWIL 300

Query: 301  SLHL---------------VDDPTVLNILFASVREVDNDDKWKDFRRGKRALTFLDNEIR 360
               L                DDPTVLNILFASVREVDNDDKWKDFRRGKRALTFLDNEIR
Sbjct: 301  FFALGVSSDKEIVDLIDYGRDDPTVLNILFASVREVDNDDKWKDFRRGKRALTFLDNEIR 360

Query: 361  KTSFPPAEKIEDCLNLYLFASLKGLKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKRF 420
            KTSFPPAEKIEDCLNLYLFASLKGLKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKRF
Sbjct: 361  KTSFPPAEKIEDCLNLYLFASLKGLKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKRF 420

Query: 421  ELAAELLERELKVHIAHARRRMEKALQRDLYGDRQVRPIEHYLDASIITNGLSRAFSTGA 480
            ELAAELLERELKVHIAHARRRMEKALQRDLYGDRQVRPIEHYLDASIITNGLSRAFSTGA
Sbjct: 421  ELAAELLERELKVHIAHARRRMEKALQRDLYGDRQVRPIEHYLDASIITNGLSRAFSTGA 480

Query: 481  WAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFL 540
            WAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFL
Sbjct: 481  WAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFL 540

Query: 541  STPDGENCGLIKNLSGTGLVSLSTTKSIVPTLFRCGMENLVDNTSTSLSGKYKIFLDGEW 600
            STPDGENCGLIKNLSGTGLVSL+TTK I+PTLF CGMENL DNTSTSL GKY+IFLDGEW
Sbjct: 541  STPDGENCGLIKNLSGTGLVSLNTTKPIIPTLFCCGMENLADNTSTSLCGKYRIFLDGEW 600

Query: 601  VGVCEDSLSFVTKVRRKRRSNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRI 660
            VGVCEDSLSFVTKVRRKRR NPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRI
Sbjct: 601  VGVCEDSLSFVTKVRRKRRRNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRI 660

Query: 661  DKSKGENYTFQSLLDKGIIELIGTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLLG 720
            DKSKGENYTFQSLLDKGIIEL+GTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLLG
Sbjct: 661  DKSKGENYTFQSLLDKGIIELVGTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLLG 720

Query: 721  LSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMTA 780
            LSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMTA
Sbjct: 721  LSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMTA 780

Query: 781  DCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHT 840
            DCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHT
Sbjct: 781  DCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHT 840

Query: 841  RSYKAEVDNKESSEKRRKSDDAINFGKTQSKIGRVDSLDDDGFPYIGANLQSGDIVIGRC 900
            RSYKAEVDNKESSEKRRKSDD INFGKTQSKIGRVDSLDDDGFPYIGANLQSGDIVIGRC
Sbjct: 841  RSYKAEVDNKESSEKRRKSDDTINFGKTQSKIGRVDSLDDDGFPYIGANLQSGDIVIGRC 900

Query: 901  AESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVL 960
            AESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVL
Sbjct: 901  AESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVL 960

Query: 961  GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAGGSLKYATPFSTP 1020
            GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAGGSLKYATPFSTP
Sbjct: 961  GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAGGSLKYATPFSTP 1020

Query: 1021 SVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGP 1080
            SVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGP
Sbjct: 1021 SVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGP 1080

Query: 1081 VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVA 1140
            VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVA
Sbjct: 1081 VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVA 1140

Query: 1141 SVIQRSVAGGRKIRGPYCRVCESVDDIVRVNVPYGAKLLCQELFSMGINLKFETQLC 1168
            SVIQRSVAGGRKIRGPYCRVCESVDDIVRVNVPYGAKLLCQELFSMGINLKFETQLC
Sbjct: 1141 SVIQRSVAGGRKIRGPYCRVCESVDDIVRVNVPYGAKLLCQELFSMGINLKFETQLC 1197

BLAST of PI0004379 vs. NCBI nr
Match: XP_031740252.1 (DNA-directed RNA polymerases IV and V subunit 2 [Cucumis sativus] >KGN55429.1 hypothetical protein Csa_012655 [Cucumis sativus])

HSP 1 Score: 2305.4 bits (5973), Expect = 0.0e+00
Identity = 1143/1197 (95.49%), Postives = 1148/1197 (95.91%), Query Frame = 0

Query: 1    MGTSGTKDDIEMNSEGEDLSPGMDLDTDDDDDYYSEPVNIHDLGEAFLKDFCKKSSMAFF 60
            MGTSG KDDIEMNSEGEDLSPGMDLDTDDDDDYYSEPVNIHDLGEAFLKDFCKKSSMAFF
Sbjct: 1    MGTSGAKDDIEMNSEGEDLSPGMDLDTDDDDDYYSEPVNIHDLGEAFLKDFCKKSSMAFF 60

Query: 61   NQYGLISHQINSYNDFIKNGIQKAFDFFGDILVQPGYDPSKKGDGEWRYASVKFGKVTLD 120
            NQYGLISHQINSYNDFIKNGIQKAFDFFGDILVQPGYDPSKKGDGEWRYA+VKFGKVTLD
Sbjct: 61   NQYGLISHQINSYNDFIKNGIQKAFDFFGDILVQPGYDPSKKGDGEWRYATVKFGKVTLD 120

Query: 121  KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVD 180
            KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVD
Sbjct: 121  KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVD 180

Query: 181  KEPVEGASDNRDVFIGRLPVMVNSDLCWMKDEQKRDCEFDRG---------------EQI 240
            KEPVEGASDNRDVFIGRLPVMVNSDLCWMKD QKRDCEFDRG               EQI
Sbjct: 181  KEPVEGASDNRDVFIGRLPVMVNSDLCWMKDGQKRDCEFDRGGYFLIKGAEKIFIAQEQI 240

Query: 241  CLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWIY 300
            CLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWI 
Sbjct: 241  CLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWIL 300

Query: 301  SLHL---------------VDDPTVLNILFASVREVDNDDKWKDFRRGKRALTFLDNEIR 360
               L                DDPTVLNILFASVREVDNDDKWKDFRRGKRALTFLDNEIR
Sbjct: 301  FFALGVSSDKEIVDLIDYGRDDPTVLNILFASVREVDNDDKWKDFRRGKRALTFLDNEIR 360

Query: 361  KTSFPPAEKIEDCLNLYLFASLKGLKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKRF 420
            KTSFPPA+KIEDCLNLYLFASLKG KQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKRF
Sbjct: 361  KTSFPPADKIEDCLNLYLFASLKGSKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKRF 420

Query: 421  ELAAELLERELKVHIAHARRRMEKALQRDLYGDRQVRPIEHYLDASIITNGLSRAFSTGA 480
            ELAAELLERELKVHIAHARRRMEKALQRDLYGDRQV PIEHYLDASIITNGLSRAFSTGA
Sbjct: 421  ELAAELLERELKVHIAHARRRMEKALQRDLYGDRQVHPIEHYLDASIITNGLSRAFSTGA 480

Query: 481  WAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFL 540
            WAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFL
Sbjct: 481  WAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFL 540

Query: 541  STPDGENCGLIKNLSGTGLVSLSTTKSIVPTLFRCGMENLVDNTSTSLSGKYKIFLDGEW 600
            STPDGENCGLIKNLSGTGLVSL+T KSI PTLFRCGMENLVDNTSTS  GKY+IFLDGEW
Sbjct: 541  STPDGENCGLIKNLSGTGLVSLNTKKSITPTLFRCGMENLVDNTSTSFCGKYRIFLDGEW 600

Query: 601  VGVCEDSLSFVTKVRRKRRSNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRI 660
            VGVCEDSLSFVT VRRKRR NPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRI
Sbjct: 601  VGVCEDSLSFVTNVRRKRRRNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRI 660

Query: 661  DKSKGENYTFQSLLDKGIIELIGTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLLG 720
            DKSKGENYTFQSLLDKGIIELIGTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLLG
Sbjct: 661  DKSKGENYTFQSLLDKGIIELIGTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLLG 720

Query: 721  LSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMTA 780
            LSCGLVPFANHDHARRALFQSQKHSNQAIGFS TNSNFRVDTLSHQLHYPQRPLFRTMTA
Sbjct: 721  LSCGLVPFANHDHARRALFQSQKHSNQAIGFSPTNSNFRVDTLSHQLHYPQRPLFRTMTA 780

Query: 781  DCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHT 840
            DCLGTPGYLSSH GILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEH 
Sbjct: 781  DCLGTPGYLSSHAGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHI 840

Query: 841  RSYKAEVDNKESSEKRRKSDDAINFGKTQSKIGRVDSLDDDGFPYIGANLQSGDIVIGRC 900
            RSYKAEVDNKESSEKRRKSDDAINFGKTQSKIGRVDSLDDDGFPYIGANLQSGDIVIGRC
Sbjct: 841  RSYKAEVDNKESSEKRRKSDDAINFGKTQSKIGRVDSLDDDGFPYIGANLQSGDIVIGRC 900

Query: 901  AESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVL 960
            AESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVL
Sbjct: 901  AESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVL 960

Query: 961  GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAGGSLKYATPFSTP 1020
            GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAGGSLKYATPFSTP
Sbjct: 961  GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAGGSLKYATPFSTP 1020

Query: 1021 SVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGP 1080
            SVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGP
Sbjct: 1021 SVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGP 1080

Query: 1081 VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVA 1140
            VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVA
Sbjct: 1081 VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVA 1140

Query: 1141 SVIQRSVAGGRKIRGPYCRVCESVDDIVRVNVPYGAKLLCQELFSMGINLKFETQLC 1168
            SVIQRSVAGGRK+RGPYCRVCES DDIVRVNVPYGAKLLCQELFSMGINLKFETQLC
Sbjct: 1141 SVIQRSVAGGRKMRGPYCRVCESFDDIVRVNVPYGAKLLCQELFSMGINLKFETQLC 1197

BLAST of PI0004379 vs. NCBI nr
Match: XP_038897771.1 (DNA-directed RNA polymerases IV and V subunit 2-like [Benincasa hispida])

HSP 1 Score: 2260.0 bits (5855), Expect = 0.0e+00
Identity = 1120/1197 (93.57%), Postives = 1143/1197 (95.49%), Query Frame = 0

Query: 1    MGTSGTKDDIEMNSEGEDLSPGMDLDTDDDDDYYSEPVNIHDLGEAFLKDFCKKSSMAFF 60
            MGTSGTKDDIEMNSEGEDLSPG D+DT DDDDYYSEPVNI DLGEAFLKDFCKKSSMAFF
Sbjct: 1    MGTSGTKDDIEMNSEGEDLSPGTDMDT-DDDDYYSEPVNIRDLGEAFLKDFCKKSSMAFF 60

Query: 61   NQYGLISHQINSYNDFIKNGIQKAFDFFGDILVQPGYDPSKKGDGEWRYASVKFGKVTLD 120
            NQYGLISHQINSYNDFIK+GIQKAFD+FG+ILVQPGYDPSKKGDGEWRYASVKFGKVTLD
Sbjct: 61   NQYGLISHQINSYNDFIKSGIQKAFDYFGEILVQPGYDPSKKGDGEWRYASVKFGKVTLD 120

Query: 121  KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVD 180
            KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISLE+YTQ+LVSSDKFKTGKD+YVD
Sbjct: 121  KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISLEVYTQRLVSSDKFKTGKDKYVD 180

Query: 181  KEPVEGASDNRDVFIGRLPVMVNSDLCWMKDEQKRDCEFDRG---------------EQI 240
            KE V+   DNRDVFIGRLPVMVNSDLCWMK+EQKRDCEFD G               EQI
Sbjct: 181  KEHVK--EDNRDVFIGRLPVMVNSDLCWMKEEQKRDCEFDHGGYFLIKGAEKIFIAQEQI 240

Query: 241  CLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWIY 300
            CLRRLWISN+QGWTVAYRSEVKRNRLIIRLVENSKSE+LKSKEKVLNVYFLSTEVPVWI 
Sbjct: 241  CLRRLWISNIQGWTVAYRSEVKRNRLIIRLVENSKSEELKSKEKVLNVYFLSTEVPVWIL 300

Query: 301  SLHL---------------VDDPTVLNILFASVREVDNDDKWKDFRRGKRALTFLDNEIR 360
               L                DDP+VLNILFASVREVDNDDKWKDFRRGKRAL FLDNE+R
Sbjct: 301  FFALGVSSDKEIVDLIDYGRDDPSVLNILFASVREVDNDDKWKDFRRGKRALNFLDNEVR 360

Query: 361  KTSFPPAEKIEDCLNLYLFASLKGLKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKRF 420
            KTSFPPAEKIEDCLNLYLFASLKGLKQKC FLGYMVKCLLQAYTGRRKCDNRDDFRNKRF
Sbjct: 361  KTSFPPAEKIEDCLNLYLFASLKGLKQKCRFLGYMVKCLLQAYTGRRKCDNRDDFRNKRF 420

Query: 421  ELAAELLERELKVHIAHARRRMEKALQRDLYGDRQVRPIEHYLDASIITNGLSRAFSTGA 480
            ELA ELLERE+KVHIAHARRRMEKALQRDLYGDR VRPIEHYLDASIITNGLSRAFSTGA
Sbjct: 421  ELAGELLEREIKVHIAHARRRMEKALQRDLYGDRDVRPIEHYLDASIITNGLSRAFSTGA 480

Query: 481  WAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFL 540
            WAH+FKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCF+
Sbjct: 481  WAHSFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFI 540

Query: 541  STPDGENCGLIKNLSGTGLVSLSTTKSIVPTLFRCGMENLVDNTSTSLSGKYKIFLDGEW 600
            STPDGENCGLIKNLS TGLVSL+T K IVPTLFRCGMENLVD+TSTSLSGKYKIFLDGEW
Sbjct: 541  STPDGENCGLIKNLSVTGLVSLNTLKPIVPTLFRCGMENLVDDTSTSLSGKYKIFLDGEW 600

Query: 601  VGVCEDSLSFVTKVRRKRRSNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRI 660
            VGVCEDSLSFVTKVRRKRR NP LHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRI
Sbjct: 601  VGVCEDSLSFVTKVRRKRRRNPLLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRI 660

Query: 661  DKSKGENYTFQSLLDKGIIELIGTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLLG 720
            DKSKGENYTFQSLLD+GIIELIGTEEEEDCR AWSIKHLMEDEGTTKYSHCELDMSFLLG
Sbjct: 661  DKSKGENYTFQSLLDRGIIELIGTEEEEDCRTAWSIKHLMEDEGTTKYSHCELDMSFLLG 720

Query: 721  LSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMTA 780
            LSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMTA
Sbjct: 721  LSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMTA 780

Query: 781  DCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHT 840
            DCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEH 
Sbjct: 781  DCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHI 840

Query: 841  RSYKAEVDNKESSEKRRKSDDAINFGKTQSKIGRVDSLDDDGFPYIGANLQSGDIVIGRC 900
            RSYKAEVDNKESSEKRRKSDDAINFGKTQSKIGRVDSLD+DGFPYIGANLQSGDIVIGRC
Sbjct: 841  RSYKAEVDNKESSEKRRKSDDAINFGKTQSKIGRVDSLDEDGFPYIGANLQSGDIVIGRC 900

Query: 901  AESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVL 960
            AESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVL
Sbjct: 901  AESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVL 960

Query: 961  GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAGGSLKYATPFSTP 1020
            GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIA+GGSLKYATPFSTP
Sbjct: 961  GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIASGGSLKYATPFSTP 1020

Query: 1021 SVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGP 1080
            SVDAIT+QLHRAGFSRWGSERVYNGRTGEMM+SLIFMGPTFYQRLIHMAEDKVKFRNTGP
Sbjct: 1021 SVDAITEQLHRAGFSRWGSERVYNGRTGEMMQSLIFMGPTFYQRLIHMAEDKVKFRNTGP 1080

Query: 1081 VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVA 1140
            VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVA
Sbjct: 1081 VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVA 1140

Query: 1141 SVIQRSVAGGRKIRGPYCRVCESVDDIVRVNVPYGAKLLCQELFSMGINLKFETQLC 1168
            SVIQRSVAGGRKIRGPYCRVCESVDDIVRVNVPYGAKLLCQELFSMGINLKFETQLC
Sbjct: 1141 SVIQRSVAGGRKIRGPYCRVCESVDDIVRVNVPYGAKLLCQELFSMGINLKFETQLC 1194

BLAST of PI0004379 vs. NCBI nr
Match: KAG7037651.1 (DNA-directed RNA polymerases IV and V subunit 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 2217.2 bits (5744), Expect = 0.0e+00
Identity = 1094/1197 (91.40%), Postives = 1137/1197 (94.99%), Query Frame = 0

Query: 1    MGTSGTKDDIEMNSEGEDLSPGMDLDTDDDDDYYSEPVNIHDLGEAFLKDFCKKSSMAFF 60
            MGTSG KDDIEMNSE EDLSPG D+DTDDDD  YSEPVNIHDLGE FLKDFCKKSSMAFF
Sbjct: 1    MGTSGAKDDIEMNSEPEDLSPGTDMDTDDDD--YSEPVNIHDLGETFLKDFCKKSSMAFF 60

Query: 61   NQYGLISHQINSYNDFIKNGIQKAFDFFGDILVQPGYDPSKKGDGEWRYASVKFGKVTLD 120
            N+YGLISHQ+NSYNDFIK+GIQK+FD+FG+I+VQPGYDPSKKGDGEWRYASVKFGKVTLD
Sbjct: 61   NEYGLISHQLNSYNDFIKSGIQKSFDYFGEIVVQPGYDPSKKGDGEWRYASVKFGKVTLD 120

Query: 121  KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVD 180
            KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMK+NI++E+YTQ+LV SDKFKTG+DQYVD
Sbjct: 121  KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKMNINVEVYTQRLVRSDKFKTGQDQYVD 180

Query: 181  KEPVEGASDNRDVFIGRLPVMVNSDLCWMKDEQKRDCEFDRG---------------EQI 240
            K+ +  + DNRD+FIGRLPVMVNSDLCWMKD+QKRDCEFDRG               EQI
Sbjct: 181  KDLL--SQDNRDIFIGRLPVMVNSDLCWMKDDQKRDCEFDRGGYFLIKGAEKIFIAQEQI 240

Query: 241  CLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWIY 300
            CLRRLWISN QGWTVAYRSEVKRNRLIIRLVENSKSE+LKSKEKVLNVYFLSTE+PVWI 
Sbjct: 241  CLRRLWISNNQGWTVAYRSEVKRNRLIIRLVENSKSEELKSKEKVLNVYFLSTEIPVWIL 300

Query: 301  -----------SLHLVD----DPTVLNILFASVREVDNDDKWKDFRRGKRALTFLDNEIR 360
                        + L+D    DPTVLNILFASVR VDNDDKWKDFRRGKRAL FL+NE++
Sbjct: 301  FFALGVSSDREIVDLIDFGREDPTVLNILFASVRVVDNDDKWKDFRRGKRALNFLENEVK 360

Query: 361  KTSFPPAEKIEDCLNLYLFASLKGLKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKRF 420
            KTSFPPAEKIEDCLNLYLFASLKGLKQKC FLGYMVKCLLQAYTGRRKCDNRDDFRNKRF
Sbjct: 361  KTSFPPAEKIEDCLNLYLFASLKGLKQKCRFLGYMVKCLLQAYTGRRKCDNRDDFRNKRF 420

Query: 421  ELAAELLERELKVHIAHARRRMEKALQRDLYGDRQVRPIEHYLDASIITNGLSRAFSTGA 480
            ELA ELLERE+KVHIAHARRRMEKALQRDLYGDR VRPIEHY DASIITNGLSRAFSTGA
Sbjct: 421  ELAGELLEREIKVHIAHARRRMEKALQRDLYGDRDVRPIEHYFDASIITNGLSRAFSTGA 480

Query: 481  WAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFL 540
            WAH+FKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFL
Sbjct: 481  WAHSFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFL 540

Query: 541  STPDGENCGLIKNLSGTGLVSLSTTKSIVPTLFRCGMENLVDNTSTSLSGKYKIFLDGEW 600
            STPDGENCGLIKNLS TGLVSL+T K +VPTLFRCGMEN+VD+TSTSLSGK++IFL+GEW
Sbjct: 541  STPDGENCGLIKNLSITGLVSLNTLKPVVPTLFRCGMENVVDDTSTSLSGKHRIFLNGEW 600

Query: 601  VGVCEDSLSFVTKVRRKRRSNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRI 660
            VGVCEDSLSFVTKVRRKRR N  LHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRI
Sbjct: 601  VGVCEDSLSFVTKVRRKRRRNLLLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRI 660

Query: 661  DKSKGENYTFQSLLDKGIIELIGTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLLG 720
            DKSKGE+YTFQSLLDKGIIELIGTEEEEDCR AWSIKHL ED+GT+KY+HCELD SFLLG
Sbjct: 661  DKSKGESYTFQSLLDKGIIELIGTEEEEDCRTAWSIKHLTEDQGTSKYTHCELDTSFLLG 720

Query: 721  LSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMTA 780
            LSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMTA
Sbjct: 721  LSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMTA 780

Query: 781  DCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHT 840
            DCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHT
Sbjct: 781  DCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHT 840

Query: 841  RSYKAEVDNKESSEKRRKSDDAINFGKTQSKIGRVDSLDDDGFPYIGANLQSGDIVIGRC 900
            RSYKAEVDNKESSEKRRKSDDAINFGKTQSKIGRVDSLDDDGFPYIGANLQSGDIVIGRC
Sbjct: 841  RSYKAEVDNKESSEKRRKSDDAINFGKTQSKIGRVDSLDDDGFPYIGANLQSGDIVIGRC 900

Query: 901  AESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVL 960
            AESGADHSIKLKHTEKGMVQKVVLSSNDDGKN+AVVSLRQVRSPCLGDKFSSMHGQKGVL
Sbjct: 901  AESGADHSIKLKHTEKGMVQKVVLSSNDDGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVL 960

Query: 961  GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAGGSLKYATPFSTP 1020
            GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIA+GGSLKYATPFSTP
Sbjct: 961  GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIASGGSLKYATPFSTP 1020

Query: 1021 SVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGP 1080
            SVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGP
Sbjct: 1021 SVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGP 1080

Query: 1081 VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVA 1140
            VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVA
Sbjct: 1081 VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVA 1140

Query: 1141 SVIQRSVAGGRKIRGPYCRVCESVDDIVRVNVPYGAKLLCQELFSMGINLKFETQLC 1168
            +VIQRSVAGGRKIRGPYCRVCESVDDIVRVNVPYGAKLLCQELFSMGINLKFETQ+C
Sbjct: 1141 NVIQRSVAGGRKIRGPYCRVCESVDDIVRVNVPYGAKLLCQELFSMGINLKFETQVC 1193

BLAST of PI0004379 vs. NCBI nr
Match: XP_023524029.1 (DNA-directed RNA polymerases IV and V subunit 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 2215.7 bits (5740), Expect = 0.0e+00
Identity = 1093/1197 (91.31%), Postives = 1136/1197 (94.90%), Query Frame = 0

Query: 1    MGTSGTKDDIEMNSEGEDLSPGMDLDTDDDDDYYSEPVNIHDLGEAFLKDFCKKSSMAFF 60
            MGTSG KDDIEMNSE EDLSPG D+DTDDDD  YSEPVNIHDLGE FLKDFCKKSSMAFF
Sbjct: 1    MGTSGAKDDIEMNSEPEDLSPGTDMDTDDDD--YSEPVNIHDLGETFLKDFCKKSSMAFF 60

Query: 61   NQYGLISHQINSYNDFIKNGIQKAFDFFGDILVQPGYDPSKKGDGEWRYASVKFGKVTLD 120
            N+YGLISHQ+NSYNDFIK+GIQK+FD+FG+I+VQPGYDPSKKGDGEWRYASVKFGKVTLD
Sbjct: 61   NEYGLISHQLNSYNDFIKSGIQKSFDYFGEIVVQPGYDPSKKGDGEWRYASVKFGKVTLD 120

Query: 121  KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVD 180
            KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMK+NI++E+YTQ+LV SDKFKTG+DQYVD
Sbjct: 121  KPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKMNINVEVYTQRLVRSDKFKTGQDQYVD 180

Query: 181  KEPVEGASDNRDVFIGRLPVMVNSDLCWMKDEQKRDCEFDRG---------------EQI 240
            K+ +  + DNRD+FIGRLPVMVNSDLCWMKD+QKRDCEFD G               EQI
Sbjct: 181  KDLL--SQDNRDIFIGRLPVMVNSDLCWMKDDQKRDCEFDHGGYFLIKGAEKIFIAQEQI 240

Query: 241  CLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWIY 300
            CLRRLWISN QGWTVAYRSEVKRNRLIIRLVENSKSE+LKSKEKVLNVYFLSTE+PVWI 
Sbjct: 241  CLRRLWISNNQGWTVAYRSEVKRNRLIIRLVENSKSEELKSKEKVLNVYFLSTEIPVWIL 300

Query: 301  -----------SLHLVD----DPTVLNILFASVREVDNDDKWKDFRRGKRALTFLDNEIR 360
                        + L+D    DPTVLNILFASVR VDNDDKWKDFRRGKRAL FL+NE++
Sbjct: 301  FFALGVSSDREIVDLIDFGREDPTVLNILFASVRVVDNDDKWKDFRRGKRALNFLENEVK 360

Query: 361  KTSFPPAEKIEDCLNLYLFASLKGLKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKRF 420
            KTSFPPAEKIEDCLNLYLFASLKGLKQKC FLGYMVKCLLQAYTGRRKCDNRDDFRNKRF
Sbjct: 361  KTSFPPAEKIEDCLNLYLFASLKGLKQKCRFLGYMVKCLLQAYTGRRKCDNRDDFRNKRF 420

Query: 421  ELAAELLERELKVHIAHARRRMEKALQRDLYGDRQVRPIEHYLDASIITNGLSRAFSTGA 480
            ELA ELLERE+KVHIAHARRRMEKALQRDLYGDR VRPIEHY DASIITNGLSRAFSTGA
Sbjct: 421  ELAGELLEREIKVHIAHARRRMEKALQRDLYGDRDVRPIEHYFDASIITNGLSRAFSTGA 480

Query: 481  WAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFL 540
            WAH+FKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFL
Sbjct: 481  WAHSFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFL 540

Query: 541  STPDGENCGLIKNLSGTGLVSLSTTKSIVPTLFRCGMENLVDNTSTSLSGKYKIFLDGEW 600
            STPDGENCGLIKNLS TGLVSL+T K +VPTLFRCGMEN+VD+TSTSLSGK++IFL+GEW
Sbjct: 541  STPDGENCGLIKNLSITGLVSLNTLKPVVPTLFRCGMENMVDDTSTSLSGKHRIFLNGEW 600

Query: 601  VGVCEDSLSFVTKVRRKRRSNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRI 660
            VGVCEDSLSFVTKVRRKRR N  LHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRI
Sbjct: 601  VGVCEDSLSFVTKVRRKRRRNLLLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRI 660

Query: 661  DKSKGENYTFQSLLDKGIIELIGTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLLG 720
            DKSKGE+YTFQSLLDKGIIELIGTEEEEDCR AWSIKHL ED+GT+KY+HCELD SFLLG
Sbjct: 661  DKSKGESYTFQSLLDKGIIELIGTEEEEDCRTAWSIKHLTEDQGTSKYTHCELDTSFLLG 720

Query: 721  LSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMTA 780
            LSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMTA
Sbjct: 721  LSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMTA 780

Query: 781  DCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHT 840
            DCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHT
Sbjct: 781  DCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHT 840

Query: 841  RSYKAEVDNKESSEKRRKSDDAINFGKTQSKIGRVDSLDDDGFPYIGANLQSGDIVIGRC 900
            RSYKAEVDNKESSEKRRKSDDAINFGKTQSKIGRVDSLDDDGFPYIGANLQSGDIVIGRC
Sbjct: 841  RSYKAEVDNKESSEKRRKSDDAINFGKTQSKIGRVDSLDDDGFPYIGANLQSGDIVIGRC 900

Query: 901  AESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVL 960
            AESGADHSIKLKHTEKGMVQKVVLSSNDDGKN+AVVSLRQVRSPCLGDKFSSMHGQKGVL
Sbjct: 901  AESGADHSIKLKHTEKGMVQKVVLSSNDDGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVL 960

Query: 961  GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAGGSLKYATPFSTP 1020
            GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIA+GGSLKYATPFSTP
Sbjct: 961  GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIASGGSLKYATPFSTP 1020

Query: 1021 SVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGP 1080
            SVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGP
Sbjct: 1021 SVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGP 1080

Query: 1081 VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVA 1140
            VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVA
Sbjct: 1081 VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVA 1140

Query: 1141 SVIQRSVAGGRKIRGPYCRVCESVDDIVRVNVPYGAKLLCQELFSMGINLKFETQLC 1168
            +VIQRSVAGGRKIRGPYCRVCESVDDIVRVNVPYGAKLLCQELFSMGINLKFETQ+C
Sbjct: 1141 NVIQRSVAGGRKIRGPYCRVCESVDDIVRVNVPYGAKLLCQELFSMGINLKFETQVC 1193

BLAST of PI0004379 vs. TAIR 10
Match: AT3G23780.1 (nuclear RNA polymerase D2A )

HSP 1 Score: 1567.0 bits (4056), Expect = 0.0e+00
Identity = 771/1195 (64.52%), Postives = 940/1195 (78.66%), Query Frame = 0

Query: 21   PGMDLDTDDDDDYYSE--PVNIHDLGEAFLKDFCKKSSMAFFNQYGLISHQINSYNDFIK 80
            P MD+D  D +++ +    +N+ +LGE FL+ FCKK++ +FF++YGLISHQ+NSYN FI+
Sbjct: 2    PDMDIDVKDLEEFEATTGEINLSELGEGFLQSFCKKAATSFFDKYGLISHQLNSYNYFIE 61

Query: 81   NGIQKAFDFFGDILVQPGYDPSKKGDGEWRYASVKFGKVTLDKPKFWGGAASGKEYNMLP 140
            +G+Q  F  FG++LV+P +D  KK D +WRYA+VKFG+VT++KP F+   +  KE   LP
Sbjct: 62   HGLQNVFQSFGEMLVEPSFDVVKKKDNDWRYATVKFGEVTVEKPTFF---SDDKELEFLP 121

Query: 141  RHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVDKEPVEGASDNRDVFIGRL 200
             HARLQNMTYS+R+K+N+ +E++   +V SDKFKTG+D YV+K+ ++     +D+ IG +
Sbjct: 122  WHARLQNMTYSARIKVNVQVEVFKNTVVKSDKFKTGQDNYVEKKILD--VKKQDILIGSI 181

Query: 201  PVMVNSDLCWMKDE-----QKRDCEFDRG---------------EQICLRRLWISNVQGW 260
            PVMV S LC   ++     +K DC FD+G               EQ+C +RLWISN   W
Sbjct: 182  PVMVKSILCKTSEKGKENCKKGDCAFDQGGYFVIKGAEKVFIAQEQMCTKRLWISN-SPW 241

Query: 261  TVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWIY-----------SL 320
            TV++RSE KRNR I+RL EN K+ED K +EKVL VYFLSTE+PVW+            ++
Sbjct: 242  TVSFRSENKRNRFIVRLSENEKAEDYKRREKVLTVYFLSTEIPVWLLFFALGVSSDKEAM 301

Query: 321  HLV----DDPTVLNILFASVREVDNDDKWKDFRRGKRALTFLDNEIRKTSFPPAEKIEDC 380
             L+    DD ++ N L AS+     D   + FR G  ALT+++ +I+ T FPPAE +++C
Sbjct: 302  DLIAFDGDDASITNSLIASIHVA--DAVCEAFRCGNNALTYVEQQIKSTKFPPAESVDEC 361

Query: 381  LNLYLFASLKGLKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKRFELAAELLERELKV 440
            L+LYLF  L+ LK+K  FLGYMVKCLL +Y G+RKC+NRD FRNKR ELA ELLERE++V
Sbjct: 362  LHLYLFPGLQSLKKKARFLGYMVKCLLNSYAGKRKCENRDSFRNKRIELAGELLEREIRV 421

Query: 441  HIAHARRRMEKALQRDLYGDRQVRPIEHYLDASIITNGLSRAFSTGAWAHAFKRMERISG 500
            H+AHARR+M +A+Q+ L GD  ++PIEHYLDAS+ITNGLSRAFSTGAW+H F++MER+SG
Sbjct: 422  HLAHARRKMTRAMQKHLSGDGDLKPIEHYLDASVITNGLSRAFSTGAWSHPFRKMERVSG 481

Query: 501  VVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLIKN 560
            VVA LGRANPLQT+ +LRRTRQQV YTGKVGDARYPHPSHWGRVCFLSTPDGENCGL+KN
Sbjct: 482  VVANLGRANPLQTLIDLRRTRQQVLYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLVKN 541

Query: 561  LSGTGLVSLSTTKSIVPTLFRCGMENLVDNTSTSLSGKYKIFLDGEWVGVCEDSLSFVTK 620
            +S  GLVS  + +S+V  LF CGME L+D+T T L GK+K+ L+G+WVG+C DS SFV +
Sbjct: 542  MSLLGLVSTQSLESVVEKLFACGMEELMDDTCTPLFGKHKVLLNGDWVGLCADSESFVAE 601

Query: 621  VRRKRRSNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRIDKSKGENYTFQSL 680
            ++ +RR +    ++E+KRD+   EVRIF+DAGR+LRPLLVVENL ++ + K   Y F  L
Sbjct: 602  LKSRRRQSELPREMEIKRDKDDNEVRIFTDAGRLLRPLLVVENLQKLKQEKPSQYPFDHL 661

Query: 681  LDKGIIELIGTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLLGLSCGLVPFANHDH 740
            LD GI+ELIG EEEEDC  AW IK L+++     Y+HCELD+SFLLG+SC +VPFANHDH
Sbjct: 662  LDHGILELIGIEEEEDCNTAWGIKQLLKEPKI--YTHCELDLSFLLGVSCAVVPFANHDH 721

Query: 741  ARRALFQSQKHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMTADCLGTPGYLSSHT 800
             RR L+QSQKH  QAIGFS+TN N R DTLS QL YPQ+PLF+T+ ++C           
Sbjct: 722  GRRVLYQSQKHCQQAIGFSSTNPNIRCDTLSQQLFYPQKPLFKTLASEC----------- 781

Query: 801  GILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHTRSYKAEVDNKESS 860
              L K   +NGQNAIVAVNVHLGYNQEDS+VMN+ASLERGMFRSE  RSYKAEVD K+ S
Sbjct: 782  --LKKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQIRSYKAEVDAKD-S 841

Query: 861  EKRRKSDDAINFGKTQSKIGRVDSLDDDGFPYIGANLQSGDIVIGRCAESGADHSIKLKH 920
            EKR+K D+ + FGKT SKIG+VDSL+DDGFP+IGAN+ +GDIVIGRC ESGADHSIKLKH
Sbjct: 842  EKRKKMDELVQFGKTHSKIGKVDSLEDDGFPFIGANMSTGDIVIGRCTESGADHSIKLKH 901

Query: 921  TEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTI 980
            TE+G+VQKVVLSSND+GKN+A VSLRQVRSPCLGDKFSSMHGQKGVLG+LE Q+NFPFTI
Sbjct: 902  TERGIVQKVVLSSNDEGKNFAAVSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTI 961

Query: 981  QGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAA-----GGSLKY------ATPFSTPSV 1040
            QGIVPDIVINPHAFPSRQTPGQLLEAAL KGIA      G S  Y      ATPFSTP V
Sbjct: 962  QGIVPDIVINPHAFPSRQTPGQLLEAALSKGIACPIQKEGSSAAYTKLTRHATPFSTPGV 1021

Query: 1041 DAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVH 1100
              IT+QLHRAGFSRWG+ERVYNGR+GEMMRS+IFMGPTFYQRL+HM+EDKVKFRNTGPVH
Sbjct: 1022 TEITEQLHRAGFSRWGNERVYNGRSGEMMRSMIFMGPTFYQRLVHMSEDKVKFRNTGPVH 1081

Query: 1101 PLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVASV 1160
            PLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMH+C+KCK  A+V
Sbjct: 1082 PLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHICRKCKTYANV 1141

Query: 1161 IQRSVAGGRKIRGPYCRVCESVDDIVRVNVPYGAKLLCQELFSMGINLKFETQLC 1168
            I+R+ + GRKIRGPYCRVC S D +VRV VPYGAKLLCQELFSMGI L F+T+LC
Sbjct: 1142 IERTPSSGRKIRGPYCRVCVSSDHVVRVYVPYGAKLLCQELFSMGITLNFDTKLC 1172

BLAST of PI0004379 vs. TAIR 10
Match: AT3G23780.2 (nuclear RNA polymerase D2A )

HSP 1 Score: 1567.0 bits (4056), Expect = 0.0e+00
Identity = 771/1195 (64.52%), Postives = 940/1195 (78.66%), Query Frame = 0

Query: 21   PGMDLDTDDDDDYYSE--PVNIHDLGEAFLKDFCKKSSMAFFNQYGLISHQINSYNDFIK 80
            P MD+D  D +++ +    +N+ +LGE FL+ FCKK++ +FF++YGLISHQ+NSYN FI+
Sbjct: 2    PDMDIDVKDLEEFEATTGEINLSELGEGFLQSFCKKAATSFFDKYGLISHQLNSYNYFIE 61

Query: 81   NGIQKAFDFFGDILVQPGYDPSKKGDGEWRYASVKFGKVTLDKPKFWGGAASGKEYNMLP 140
            +G+Q  F  FG++LV+P +D  KK D +WRYA+VKFG+VT++KP F+   +  KE   LP
Sbjct: 62   HGLQNVFQSFGEMLVEPSFDVVKKKDNDWRYATVKFGEVTVEKPTFF---SDDKELEFLP 121

Query: 141  RHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVDKEPVEGASDNRDVFIGRL 200
             HARLQNMTYS+R+K+N+ +E++   +V SDKFKTG+D YV+K+ ++     +D+ IG +
Sbjct: 122  WHARLQNMTYSARIKVNVQVEVFKNTVVKSDKFKTGQDNYVEKKILD--VKKQDILIGSI 181

Query: 201  PVMVNSDLCWMKDE-----QKRDCEFDRG---------------EQICLRRLWISNVQGW 260
            PVMV S LC   ++     +K DC FD+G               EQ+C +RLWISN   W
Sbjct: 182  PVMVKSILCKTSEKGKENCKKGDCAFDQGGYFVIKGAEKVFIAQEQMCTKRLWISN-SPW 241

Query: 261  TVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWIY-----------SL 320
            TV++RSE KRNR I+RL EN K+ED K +EKVL VYFLSTE+PVW+            ++
Sbjct: 242  TVSFRSENKRNRFIVRLSENEKAEDYKRREKVLTVYFLSTEIPVWLLFFALGVSSDKEAM 301

Query: 321  HLV----DDPTVLNILFASVREVDNDDKWKDFRRGKRALTFLDNEIRKTSFPPAEKIEDC 380
             L+    DD ++ N L AS+     D   + FR G  ALT+++ +I+ T FPPAE +++C
Sbjct: 302  DLIAFDGDDASITNSLIASIHVA--DAVCEAFRCGNNALTYVEQQIKSTKFPPAESVDEC 361

Query: 381  LNLYLFASLKGLKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKRFELAAELLERELKV 440
            L+LYLF  L+ LK+K  FLGYMVKCLL +Y G+RKC+NRD FRNKR ELA ELLERE++V
Sbjct: 362  LHLYLFPGLQSLKKKARFLGYMVKCLLNSYAGKRKCENRDSFRNKRIELAGELLEREIRV 421

Query: 441  HIAHARRRMEKALQRDLYGDRQVRPIEHYLDASIITNGLSRAFSTGAWAHAFKRMERISG 500
            H+AHARR+M +A+Q+ L GD  ++PIEHYLDAS+ITNGLSRAFSTGAW+H F++MER+SG
Sbjct: 422  HLAHARRKMTRAMQKHLSGDGDLKPIEHYLDASVITNGLSRAFSTGAWSHPFRKMERVSG 481

Query: 501  VVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLIKN 560
            VVA LGRANPLQT+ +LRRTRQQV YTGKVGDARYPHPSHWGRVCFLSTPDGENCGL+KN
Sbjct: 482  VVANLGRANPLQTLIDLRRTRQQVLYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLVKN 541

Query: 561  LSGTGLVSLSTTKSIVPTLFRCGMENLVDNTSTSLSGKYKIFLDGEWVGVCEDSLSFVTK 620
            +S  GLVS  + +S+V  LF CGME L+D+T T L GK+K+ L+G+WVG+C DS SFV +
Sbjct: 542  MSLLGLVSTQSLESVVEKLFACGMEELMDDTCTPLFGKHKVLLNGDWVGLCADSESFVAE 601

Query: 621  VRRKRRSNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRIDKSKGENYTFQSL 680
            ++ +RR +    ++E+KRD+   EVRIF+DAGR+LRPLLVVENL ++ + K   Y F  L
Sbjct: 602  LKSRRRQSELPREMEIKRDKDDNEVRIFTDAGRLLRPLLVVENLQKLKQEKPSQYPFDHL 661

Query: 681  LDKGIIELIGTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLLGLSCGLVPFANHDH 740
            LD GI+ELIG EEEEDC  AW IK L+++     Y+HCELD+SFLLG+SC +VPFANHDH
Sbjct: 662  LDHGILELIGIEEEEDCNTAWGIKQLLKEPKI--YTHCELDLSFLLGVSCAVVPFANHDH 721

Query: 741  ARRALFQSQKHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMTADCLGTPGYLSSHT 800
             RR L+QSQKH  QAIGFS+TN N R DTLS QL YPQ+PLF+T+ ++C           
Sbjct: 722  GRRVLYQSQKHCQQAIGFSSTNPNIRCDTLSQQLFYPQKPLFKTLASEC----------- 781

Query: 801  GILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHTRSYKAEVDNKESS 860
              L K   +NGQNAIVAVNVHLGYNQEDS+VMN+ASLERGMFRSE  RSYKAEVD K+ S
Sbjct: 782  --LKKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQIRSYKAEVDAKD-S 841

Query: 861  EKRRKSDDAINFGKTQSKIGRVDSLDDDGFPYIGANLQSGDIVIGRCAESGADHSIKLKH 920
            EKR+K D+ + FGKT SKIG+VDSL+DDGFP+IGAN+ +GDIVIGRC ESGADHSIKLKH
Sbjct: 842  EKRKKMDELVQFGKTHSKIGKVDSLEDDGFPFIGANMSTGDIVIGRCTESGADHSIKLKH 901

Query: 921  TEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTI 980
            TE+G+VQKVVLSSND+GKN+A VSLRQVRSPCLGDKFSSMHGQKGVLG+LE Q+NFPFTI
Sbjct: 902  TERGIVQKVVLSSNDEGKNFAAVSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTI 961

Query: 981  QGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAA-----GGSLKY------ATPFSTPSV 1040
            QGIVPDIVINPHAFPSRQTPGQLLEAAL KGIA      G S  Y      ATPFSTP V
Sbjct: 962  QGIVPDIVINPHAFPSRQTPGQLLEAALSKGIACPIQKEGSSAAYTKLTRHATPFSTPGV 1021

Query: 1041 DAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVH 1100
              IT+QLHRAGFSRWG+ERVYNGR+GEMMRS+IFMGPTFYQRL+HM+EDKVKFRNTGPVH
Sbjct: 1022 TEITEQLHRAGFSRWGNERVYNGRSGEMMRSMIFMGPTFYQRLVHMSEDKVKFRNTGPVH 1081

Query: 1101 PLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVASV 1160
            PLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMH+C+KCK  A+V
Sbjct: 1082 PLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHICRKCKTYANV 1141

Query: 1161 IQRSVAGGRKIRGPYCRVCESVDDIVRVNVPYGAKLLCQELFSMGINLKFETQLC 1168
            I+R+ + GRKIRGPYCRVC S D +VRV VPYGAKLLCQELFSMGI L F+T+LC
Sbjct: 1142 IERTPSSGRKIRGPYCRVCVSSDHVVRVYVPYGAKLLCQELFSMGITLNFDTKLC 1172

BLAST of PI0004379 vs. TAIR 10
Match: AT3G18090.1 (nuclear RNA polymerase D2B )

HSP 1 Score: 1437.9 bits (3721), Expect = 0.0e+00
Identity = 708/1073 (65.98%), Postives = 854/1073 (79.59%), Query Frame = 0

Query: 142  RLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVDKEPVEGASDNRDVFIGRLPVM 201
            RLQNMTYS+R+K+N  +E++ + ++  DKFKTG+D+YV+KE ++     +D+ IG +PVM
Sbjct: 4    RLQNMTYSARIKVNAQVEVFKKIVIKHDKFKTGQDEYVEKEILD--VKKQDILIGSIPVM 63

Query: 202  VNSDLCWMKDEQKRDCE-----FDRG---------------EQICLRRLWISNVQGWTVA 261
            V S LC   ++ K +C+     FD+G               EQ+C +RLWISN   WTV+
Sbjct: 64   VKSVLCKTSEKGKENCKKGNCAFDQGGYFVIKGAEKVFIAQEQMCTKRLWISN-SPWTVS 123

Query: 262  YRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWIY-----------SLHLV 321
            +RSE KRNR I+RL EN K+ED K  EKVL VYFLSTE+PVW+            ++ L+
Sbjct: 124  FRSETKRNRFIVRLSENEKAEDYKIMEKVLTVYFLSTEIPVWLLFFALGVSSDKEAMDLI 183

Query: 322  ----DDPTVLNILFASVREVDNDDKWKDFRRGKRALTFLDNEIRKTSFPPAEKIEDCLNL 381
                DD ++ N L AS+ E   D   + FR G  ALT+++++I+ T FPPAE ++DCL L
Sbjct: 184  AFDGDDASITNSLIASIHEA--DAVCEAFRCGNNALTYVEHQIKSTKFPPAESVDDCLRL 243

Query: 382  YLFASLKGLKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKRFELAAELLERELKVHIA 441
            YLF  L+GLK+K  FLGYMVKCLL AY G+RKC+NRD FRNKR ELA ELLERE++VH+A
Sbjct: 244  YLFPCLQGLKKKARFLGYMVKCLLSAYAGKRKCENRDSFRNKRIELAGELLEREIRVHLA 303

Query: 442  HARRRMEKALQRDLYGDRQVRPIEHYLDASIITNGLSRAFSTGAWAHAFKRMERISGVVA 501
            HARR+M +A+Q+ L GD  ++PIEHYLDAS+ITNGL+RAFSTGAW+H F++MER+SGVVA
Sbjct: 304  HARRKMTRAMQKQLSGDGDLKPIEHYLDASVITNGLNRAFSTGAWSHPFRKMERVSGVVA 363

Query: 502  TLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLIKNLSG 561
             LGRANPLQT+ +LRRTRQQV YTGKVGDAR+PHPSHWGRVCFLSTPDGENCGL+KN+S 
Sbjct: 364  NLGRANPLQTLIDLRRTRQQVLYTGKVGDARHPHPSHWGRVCFLSTPDGENCGLVKNMSL 423

Query: 562  TGLVSLSTTKSIVPTLFRCGMENLVDNTSTSLSGKYKIFLDGEWVGVCEDSLSFVTKVRR 621
             GLVS    +S+V  LF CGME L+++TST L GK+K+ L+G+WVG+C DS SFV +++ 
Sbjct: 424  LGLVSTQGLESVVEMLFTCGMEELMNDTSTPLCGKHKVLLNGDWVGLCADSESFVGELKS 483

Query: 622  KRRSNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRIDKSKGENYTFQSLLDK 681
            +RR +    ++E+KRD+   EVRIF+DAGR+LRPLLVVENL+++ + K   Y F+ LLD+
Sbjct: 484  RRRQSELPLEMEIKRDKDDNEVRIFTDAGRLLRPLLVVENLHKLKQDKPTQYPFKHLLDQ 543

Query: 682  GIIELIGTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLLGLSCGLVPFANHDHARR 741
            GI+ELIG EEEEDC  AW IK L+++     Y+HCELD+SFLLG+SC +VPFANHDH +R
Sbjct: 544  GILELIGIEEEEDCTTAWGIKQLLKE--PKNYTHCELDLSFLLGVSCAIVPFANHDHGKR 603

Query: 742  ALFQSQKHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMTADCLGTPGYLSSHTGIL 801
             L+QSQKH  QAIGFS+TN N R DTLS QL YPQ+PLF+T+ ++C             L
Sbjct: 604  VLYQSQKHCQQAIGFSSTNPNIRCDTLSQQLFYPQKPLFKTLASEC-------------L 663

Query: 802  PKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHTRSYKAEVDNKESSEKR 861
             K   +NGQNAIVAVNVHLGYNQEDS+VMN+ASLERGMFRSE  RSYKAEVD K+ SEKR
Sbjct: 664  EKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQIRSYKAEVDTKD-SEKR 723

Query: 862  RKSDDAINFGKTQSKIGRVDSLDDDGFPYIGANLQSGDIVIGRCAESGADHSIKLKHTEK 921
            +K D+ + FGKT SKIG+VDSL+DDGFP+IGAN+ +GDIVIGRC ESGADHSIKLKHTE+
Sbjct: 724  KKMDELVQFGKTYSKIGKVDSLEDDGFPFIGANMSTGDIVIGRCTESGADHSIKLKHTER 783

Query: 922  GMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGI 981
            G+VQKVVLSSND+GKN+A VSLRQVRSPCLGDKFSSMHGQKGVLG+LE Q+NFPFTIQGI
Sbjct: 784  GIVQKVVLSSNDEGKNFAAVSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGI 843

Query: 982  VPDIVINPHAFPSRQTPGQLLEAALGKGIAA------GGSLKY------ATPFSTPSVDA 1041
            VPDIVINPHAFPSRQTPGQLLEAAL KGIA       G S  Y      ATPFSTP V  
Sbjct: 844  VPDIVINPHAFPSRQTPGQLLEAALSKGIACPIQKKEGSSAAYTKLTRHATPFSTPGVTE 903

Query: 1042 ITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPL 1101
            IT+QLHRAGFSRWG+ERVYNGR+GEMMRSLIFMGPTFYQRL+HM+E+KVKFRNTGPVHPL
Sbjct: 904  ITEQLHRAGFSRWGNERVYNGRSGEMMRSLIFMGPTFYQRLVHMSENKVKFRNTGPVHPL 963

Query: 1102 TRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVASVIQ 1161
            TRQPVADRKRFGGI+FGEMERDCLIAHGASANLHERLFTLSDSSQMH+C+KCK  A+VI+
Sbjct: 964  TRQPVADRKRFGGIRFGEMERDCLIAHGASANLHERLFTLSDSSQMHICRKCKTYANVIE 1023

Query: 1162 RSVAGGRKIRGPYCRVCESVDDIVRVNVPYGAKLLCQELFSMGINLKFETQLC 1168
            R+ + GRKIRGPYCRVC S D +VRV VPYGAKLLCQELFSMGI L F+T+LC
Sbjct: 1024 RTPSSGRKIRGPYCRVCASSDHVVRVYVPYGAKLLCQELFSMGITLNFDTKLC 1055

BLAST of PI0004379 vs. TAIR 10
Match: AT4G21710.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 620.5 bits (1599), Expect = 2.7e-177
Identity = 410/1221 (33.58%), Postives = 632/1221 (51.76%), Query Frame = 0

Query: 31   DDYYSEPVNIH-DLGEAFLKDFCKKSSMAFFNQYGLISHQINSYNDFIKNGIQKAFDFFG 90
            ++Y  EP  +  D  E   ++       A+F + GL+  Q++S+++FI+N +Q+  D   
Sbjct: 4    NEYEPEPQYVEDDDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESA 63

Query: 91   DILVQP--GYDPSKKGDGEWRYASVKFGKVTLDKPKFWGGAASGKEYNMLPRHARLQNMT 150
            DI ++P   ++P  + D       + FG++ L KP      + G+   + P+ ARL+N+T
Sbjct: 64   DIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMM--TESDGETATLFPKAARLRNLT 123

Query: 151  YSSRMKINISLEIYTQKLVSSDKFKTGKDQYVDKEPVEGASDNRDVFIGRLPVMVNSDLC 210
            YS+ + ++++  +           K G     D E V    D   VFIG++P+M+ S  C
Sbjct: 124  YSAPLYVDVTKRV----------IKKGH----DGEEVTETQDFTKVFIGKVPIMLRSSYC 183

Query: 211  WMKDEQKRD------CEFDRG---------------EQICLRRLWI-SNVQGWTVAYRSE 270
             +    ++D      C +D+G               E++    +++    Q    AY  E
Sbjct: 184  TLFQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGE 243

Query: 271  VK-----RNR----LIIRLVENSKSEDLKSKEKV-LNVYFLSTEVPVWIY--SLHLVDDP 330
            V+     +NR    + +R++  + ++   S + +   + ++ TE+P+ I   +L  V D 
Sbjct: 244  VRSMAENQNRPPSTMFVRMLARASAKGGSSGQYIRCTLPYIRTEIPIIIVFRALGFVADK 303

Query: 331  TVL-------------NILFASVRE---VDNDDKWKDF--RRG-------KRALTFLDNE 390
             +L              +L  S+ E   + N     D+  +RG       ++ + +  + 
Sbjct: 304  DILEHICYDFADTQMMELLRPSLEEAFVIQNQLVALDYIGKRGATVGVTKEKRIKYARDI 363

Query: 391  IRKTSFPPAEKIEDCLNLYLFASLKGLKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNK 450
            ++K   P     E C             +K ++ GY++  LL    GRR  D+RD + NK
Sbjct: 364  LQKEMLPHVGIGEHCET-----------KKAYYFGYIIHRLLLCALGRRPEDDRDHYGNK 423

Query: 451  RFELAAELLERELKVHIAHARRRMEKALQRDLYGDRQVRPIEHYLDASIITNGLSRAFST 510
            R +LA  LL    ++      R +   +Q+ +   ++V  ++  + A  IT+GL  + +T
Sbjct: 424  RLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVN-LQFAIKAKTITSGLKYSLAT 483

Query: 511  GAWAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVC 570
            G W  A     R +GV   L R     T++ LRR    +   GK+   R  H S WG +C
Sbjct: 484  GNWGQANAAGTR-AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 543

Query: 571  FLSTPDGENCGLIKNLSGTGLVSL-STTKSIVPTLFRCGMENLVDNTSTSLSGKYKIFLD 630
               TP+G+ CGL+KNL+    +++ S    I+  L   G EN  + + + +    KIF++
Sbjct: 544  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPSVIPQATKIFVN 603

Query: 631  GEWVGVCEDSLSFVTKVRRKRRSNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENL 690
            G WVGV  D    V  +RR RR      +V V RD +LKE+RI++D GR  RPL +V+N 
Sbjct: 604  GMWVGVHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDNQ 663

Query: 691  NRIDKSK----------GENYTFQSLLDKGIIELIGTEEEEDCRVAWSIKHLM------E 750
              + K +           E   +  L+ KG IE I TEEEE   ++ +I  L+      E
Sbjct: 664  KLLIKKRDIYALQQRESAEEDGWHHLVAKGFIEYIDTEEEETTMISMTISDLVQARLRPE 723

Query: 751  DEGTTKYSHCELDMSFLLGLSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRVD 810
            +  T  Y+HCE+  S +LG+   ++PF +H+ + R  +QS     QA+G   TN  FR+D
Sbjct: 724  EAYTENYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM-GKQAMGIYVTNYQFRMD 783

Query: 811  TLSHQLHYPQRPLFRTMTADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGYNQED 870
            TL++ L+YPQ+PL  T   + L        H   LP      G NAIVA++ + GYNQED
Sbjct: 784  TLAYVLYYPQKPLVTTRAMEHL--------HFRQLPA-----GINAIVAISCYSGYNQED 843

Query: 871  SLVMNRASLERGMFRSEHTRSYKAEVDNKESSEKRRKSDDAINFGKTQS-KIGRVDSLDD 930
            S++MN++S++RG FRS   RSY+ E   K+     ++     + G T   + G  D LDD
Sbjct: 844  SVIMNQSSIDRGFFRSLFFRSYRDE--EKKMGTLVKEDFGRPDRGSTMGMRHGSYDKLDD 903

Query: 931  DGFPYIGANLQSGDIVIGRCAE-------------SGADHSIKLKHTEKGMVQKVVLSSN 990
            DG    G  +   D++IG+                +  DHSI L+H+E GMV +V+L++N
Sbjct: 904  DGLAPPGTRVSGEDVIIGKTTPISQDEAQGQSSRYTRRDHSISLRHSETGMVDQVLLTTN 963

Query: 991  DDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAF 1050
             DG  +  V +R VR P +GDKFSS HGQKG +G   +QE+ P+TI+G+ PDI++NPHA 
Sbjct: 964  ADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGVTPDIIVNPHAI 1023

Query: 1051 PSRQTPGQLLEAALGKGIAAGGSLKYATPFSTPSVDAITDQLHRAGFSRWGSERVYNGRT 1110
            PSR T GQL+E  +GK  A  G    ATPF+  +VD I+  LH+ G+   G ER+YNG T
Sbjct: 1024 PSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFERMYNGHT 1083

Query: 1111 GEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDC 1159
            G  + ++IF+GPT+YQRL HM +DK+  R  GPV  LTRQP   R R GG++FGEMERDC
Sbjct: 1084 GRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDC 1143

BLAST of PI0004379 vs. TAIR 10
Match: AT5G45140.1 (nuclear RNA polymerase C2 )

HSP 1 Score: 412.9 bits (1060), Expect = 8.4e-115
Identity = 345/1221 (28.26%), Postives = 566/1221 (46.36%), Query Frame = 0

Query: 24   DLDTDDDDDYYSEPVNIHDLGEAFLKDFCKKSSMA--FFNQYGLISHQINSYNDFIKNGI 83
            DLD  +DD +  +     +   A +K    K  +   F    GL+   ++S+N FI  GI
Sbjct: 7    DLDLTNDDHFIDK-----EKLSAPIKSTADKFQLVPEFLKVRGLVKQHLDSFNYFINVGI 66

Query: 84   QKAFDFFGDILVQPGYDPSKKGDGEWRYASVKFGKVTLDKPKFWGGAASGKEYNMLPRHA 143
             K      +  +    DPS           ++F KV + +P            N+ P   
Sbjct: 67   HKIVK--ANSRITSTVDPS---------IYLRFKKVRVGEPSI---INVNTVENINPHMC 126

Query: 144  RLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVDKEPVEGASDNRDVFIGRLPVM 203
            RL +MTY++ + +NI     +      +K K+ KD               +V IGR+P+M
Sbjct: 127  RLADMTYAAPIFVNIEYVHGSH----GNKAKSAKD---------------NVIIGRMPIM 186

Query: 204  VNSDLCWM--KDEQK----RDCEFDRGEQICLRRLWISNVQGWTVAYRSEVKRNRLII-- 263
            + S  C +  KDE++     +C  D G    ++           +  + ++ +NR+II  
Sbjct: 187  LRSCRCVLHGKDEEELARLGECPLDPGGYFIIKG------TEKVLLIQEQLSKNRIIIDS 246

Query: 264  -----------RLVENSKSEDLKSKEKVLNVYFLS---TEVPVWIY--SLHLVDDPTVLN 323
                          E +KS+ +   EK     FL     ++P+ I   ++ +  D  ++ 
Sbjct: 247  DKKGNINASVTSSTEMTKSKTVIQMEKEKIYLFLHRFVKKIPIIIVLKAMGMESDQEIVQ 306

Query: 324  IL------FASVREVDNDDKWKDFRRGKRALTFLDNEIRKTSF-PPAEK-------IEDC 383
            ++       AS+     +   +     K+AL +L+ +++K S+  P EK       + D 
Sbjct: 307  MVGRDPRFSASLLPSIEECVSEGVNTQKQALDYLEAKVKKISYGTPPEKDGRALSILRDL 366

Query: 384  LNLYLFASLKGLKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKRFELAAELL----ER 443
               ++       +QKC ++G M++ +++A   +   D++D   NKR EL+ +L+    E 
Sbjct: 367  FLAHVPVPDNNFRQKCFYVGVMLRRMIEAMLNKDAMDDKDYVGNKRLELSGQLISLLFED 426

Query: 444  ELKVHIAHARRRMEKALQRDLYGDR-QVRPIEHYLDASIITNGLSRAFSTGAWAHAFKRM 503
              K  ++ A + ++  L + +   R       +      I+ GL R  STG +     RM
Sbjct: 427  LFKTMLSEAIKNVDHILNKPIRASRFDFSQCLNKDSRYSISLGLERTLSTGNFDIKRFRM 486

Query: 504  ERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFLSTPDGENC 563
             R  G+   L R + + +M  + +   Q   + KV   R   PS WG +C   TP+GE+C
Sbjct: 487  HR-KGMTQVLTRLSFIGSMGFITKISPQFEKSRKVSGPRSLQPSQWGMLCPCDTPEGESC 546

Query: 564  GLIKNLS-GTGLVSLSTTKSIVPTLFRCGMENLVDNTSTSL--SGKYKIFLDGEWVGVCE 623
            GL+KNL+  T + +      +V   ++ G+ +L   ++  L     + + L+G  +G   
Sbjct: 547  GLVKNLALMTHVTTDEEEGPLVAMCYKLGVTDLEVLSAEELHTPDSFLVILNGLILGKHS 606

Query: 624  DSLSFVTKVRRKRRSNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVE-NLNRIDKSK 683
                F   +RR RR+      V V  +E+   V + SD GR+ RPL++ +  ++R+ +  
Sbjct: 607  RPQYFANSLRRLRRAGKIGEFVSVFTNEKQHCVYVASDVGRVCRPLVIADKGISRVKQHH 666

Query: 684  GENY-----TFQSLLDKGIIELIGTEEEEDCRVAWSIKHLMEDEGTTKY----------- 743
             +       TF   +  G+IE +   EE +  +A     L E +GTT+            
Sbjct: 667  MKELQDGVRTFDDFIRDGLIEYLDVNEENNALIA-----LYESDGTTELDEGAEAAKADT 726

Query: 744  SHCELDMSFLLGLSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRVDTLSHQLH 803
            +H E++   +LG+  GL+P+ +H+ + R  +Q      QA+G    N   R+DTL + L 
Sbjct: 727  THIEIEPFTILGVVAGLIPYPHHNQSPRNTYQCAM-GKQAMGNIAYNQLNRMDTLLYLLV 786

Query: 804  YPQRPLFRTMTADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRA 863
            YPQRPL  T T + +G               +   GQNA VAV    GY+ ED++VMN++
Sbjct: 787  YPQRPLLTTRTIELVG-------------YDKLGAGQNATVAVMSFSGYDIEDAIVMNKS 846

Query: 864  SLERGMFRSEHTRSYKAEVDNKESSEKRRKSDDAINFGKTQSKIGRVDSLDDDGFPYIGA 923
            SL+RG  R    +   A     ++      +D  +   +T     ++  LDDDG    G 
Sbjct: 847  SLDRGFGRCIVMKKIVAMSQKYDNC----TADRILIPQRTGPDAEKMQILDDDGLATPGE 906

Query: 924  NLQSGDIVIGR-----------CAESGADHS-----IKLKHTEKGMVQKVVLSSNDDGKN 983
             ++  DI I +            A S + +       K    E  +V +V L S+  G+ 
Sbjct: 907  IIRPNDIYINKQVPVDTVTKFTSALSDSQYRPAREYFKGPEGETQVVDRVALCSDKKGQL 966

Query: 984  YAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQT 1043
                 +R  R P LGDKFSS HGQKGV G +  QE+FPF+  GI PD+++NPH FPSR T
Sbjct: 967  CIKYIIRHTRRPELGDKFSSRHGQKGVCGIIIQQEDFPFSELGICPDLIMNPHGFPSRMT 1026

Query: 1044 PGQLLEAALGKGIAAGGSLKYATPFSTPS-----VDAITDQLHRAGFSRWGSERVYNGRT 1103
             G+++E    K   + G   Y + F   S     V+ I+  L   GFS  G + +Y+G +
Sbjct: 1027 VGKMIELLGSKAGVSCGRFHYGSAFGERSGHADKVETISATLVEKGFSYSGKDLLYSGIS 1086

Query: 1104 GEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDC 1159
            GE + + IFMGP +YQ+L HM  DK+  R +GP   +TRQP   + + GG++ GEMERDC
Sbjct: 1087 GEPVEAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMMTRQPTEGKSKNGGLRVGEMERDC 1146