PI0004354 (gene) Melon (PI 482460) v1

Overview
NamePI0004354
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Locationchr09: 15545228 .. 15545542 (-)
RNA-Seq ExpressionPI0004354
SyntenyPI0004354
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAACCCGACGATGTACAGTCAGGGCCTGGACATGTCACCTGACGACATAATGACTCCACGATCGATTCGTATGTCTGAGGCTAGGCTTGGTTCGAGCGGGGCGAAGAGGAAACGGGGAGGGCAGGCATTGGAGGCGGTAGCAATTATTCGCAGTGCCATGGAATATGCTAATGACCAACTTAAGGCCATTGCAGAATGGCCCAAAGAACAACGGCAAGATGCAAGCGTGACACGTGTGGAAGTCGTTAGACAACTACAGGGAATCTCGGAGCTGAGTCGACTAGATAGGGCCGTTGTATGCACATATTGA

mRNA sequence

ATGGAGAACCCGACGATGTACAGTCAGGGCCTGGACATGTCACCTGACGACATAATGACTCCACGATCGATTCGTATGTCTGAGGCTAGGCTTGGTTCGAGCGGGGCGAAGAGGAAACGGGGAGGGCAGGCATTGGAGGCGGTAGCAATTATTCGCAGTGCCATGGAATATGCTAATGACCAACTTAAGGCCATTGCAGAATGGCCCAAAGAACAACGGCAAGATGCAAGCGTGACACGTGTGGAAGTCGTTAGACAACTACAGGGAATCTCGGAGCTGAGTCGACTAGATAGGGCCGTTGTATGCACATATTGA

Coding sequence (CDS)

ATGGAGAACCCGACGATGTACAGTCAGGGCCTGGACATGTCACCTGACGACATAATGACTCCACGATCGATTCGTATGTCTGAGGCTAGGCTTGGTTCGAGCGGGGCGAAGAGGAAACGGGGAGGGCAGGCATTGGAGGCGGTAGCAATTATTCGCAGTGCCATGGAATATGCTAATGACCAACTTAAGGCCATTGCAGAATGGCCCAAAGAACAACGGCAAGATGCAAGCGTGACACGTGTGGAAGTCGTTAGACAACTACAGGGAATCTCGGAGCTGAGTCGACTAGATAGGGCCGTTGTATGCACATATTGA

Protein sequence

MENPTMYSQGLDMSPDDIMTPRSIRMSEARLGSSGAKRKRGGQALEAVAIIRSAMEYANDQLKAIAEWPKEQRQDASVTRVEVVRQLQGISELSRLDRAVVCTY
Homology
[Close]
BLAST of PI0004354 vs. ExPASy TrEMBL
Match: A0A5A7V469 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00340 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.6e-23
Identity = 64/98 (65.31%), Postives = 74/98 (75.51%), Query Frame = 0 

Query: 1   MENPTMYSQGLDMSPDDIMTPRSIRMSEARLGSSGAKRKRGGQALEAVAIIRSAMEYAND 60
           ME P MYSQG+DM  DDIM  R  R +E R GSSG+KRK+GGQA+E + IIR+ ME++ND
Sbjct: 30  MEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSND 89

Query: 61  QLKAIAEWPKEQRQDASVTRVEVVRQLQGISELSRLDR 99
           +LKAI EW   QRQDAS   VEVVRQLQ I ELSR DR
Sbjct: 90  RLKAIVEWLNVQRQDASARLVEVVRQLQRIPELSRYDR 127

[Close]
BLAST of PI0004354 vs. ExPASy TrEMBL
Match: A0A5D3CL79 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G00920 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 7.6e-23
Identity = 65/99 (65.66%), Postives = 74/99 (74.75%), Query Frame = 0 

Query: 1   MENPTMYSQGLDMSPDDIMTPRSIRMSEARLGSSGAKRKRGGQALEAVAIIRSAMEYAND 60
           ME PTMYS+GLDMS   I   R    +E R G S +K+K+GGQ++E V IIR+ MEYAND
Sbjct: 30  MEIPTMYSKGLDMSTYYIKGTRFGHTAEDRAGLSESKKKKGGQSIETVEIIRNVMEYAND 89

Query: 61  QLKAIAEWPKEQRQDASVTRVEVVRQLQGISELSRLDRA 100
           QLKAIAEWP  Q QDAS TR E VRQLQGI ELSRLD+A
Sbjct: 90  QLKAIAEWPNVQCQDASTTRFEFVRQLQGILELSRLDKA 128

[Close]
BLAST of PI0004354 vs. ExPASy TrEMBL
Match: A0A5D3C1M0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1317G00570 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 4.2e-21
Identity = 58/99 (58.59%), Postives = 74/99 (74.75%), Query Frame = 0 

Query: 4   PTMYSQGLDMSPDDIMTPRSIRMSEARLGSSGAKRKRGGQALEAVAIIRSAMEYANDQLK 63
           P MYS GL+MSPDD+M  R+ R+SE R  SSG+KRKR G A ++  I+R+A+EY N+QL 
Sbjct: 173 PPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLH 232

Query: 64  AIAEWPKEQRQDASVTRVEVVRQLQGISELSRLDRAVVC 103
            IAEWP  QRQDAS TR E+VRQL+ I EL+ +DR  +C
Sbjct: 233 RIAEWPILQRQDASQTRQEIVRQLEAIPELTLMDRCRLC 271

[Close]
BLAST of PI0004354 vs. ExPASy TrEMBL
Match: A0A5A7VBC5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1290G00070 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.1e-20
Identity = 58/95 (61.05%), Postives = 72/95 (75.79%), Query Frame = 0 

Query: 4   PTMYSQGLDMSPDDIMTPRSIRMSEARLGSSGAKRKRGGQALEAVAIIRSAMEYANDQLK 63
           P MYSQGL+MSPDD+M  R+ R+SE R  SSG+KRKR G A ++  I+R+A+EY N+QL 
Sbjct: 144 PPMYSQGLNMSPDDLMGTRTARVSERRNVSSGSKRKRAGHATDSGDIVRTAIEYRNEQLN 203

Query: 64  AIAEWPKEQRQDASVTRVEVVRQLQGISELSRLDR 99
            IAEWP  QRQ+AS TR EVVRQL+ I EL  +DR
Sbjct: 204 RIAEWPVLQRQNASQTRQEVVRQLEAIPELILMDR 238

[Close]
BLAST of PI0004354 vs. ExPASy TrEMBL
Match: A0A5D3E474 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G001250 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.5e-20
Identity = 56/95 (58.95%), Postives = 73/95 (76.84%), Query Frame = 0 

Query: 4   PTMYSQGLDMSPDDIMTPRSIRMSEARLGSSGAKRKRGGQALEAVAIIRSAMEYANDQLK 63
           P+MYS GL+MSPDD+M  R+ R+SE R  SSG+KRKR G A ++  I+R+A+EY N+QL 
Sbjct: 170 PSMYSSGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLH 229

Query: 64  AIAEWPKEQRQDASVTRVEVVRQLQGISELSRLDR 99
            IAEWP  QRQDAS TR E+VRQL+ I +L+ +DR
Sbjct: 230 RIAEWPILQRQDASQTRQEIVRQLEAIPKLTLMDR 264

[Close]
BLAST of PI0004354 vs. NCBI nr
Match: KAA0060529.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 117.9 bits (294), Expect = 5.4e-23
Identity = 64/98 (65.31%), Postives = 74/98 (75.51%), Query Frame = 0 

Query: 1   MENPTMYSQGLDMSPDDIMTPRSIRMSEARLGSSGAKRKRGGQALEAVAIIRSAMEYAND 60
           ME P MYSQG+DM  DDIM  R  R +E R GSSG+KRK+GGQA+E + IIR+ ME++ND
Sbjct: 30  MEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSND 89

Query: 61  QLKAIAEWPKEQRQDASVTRVEVVRQLQGISELSRLDR 99
           +LKAI EW   QRQDAS   VEVVRQLQ I ELSR DR
Sbjct: 90  RLKAIVEWLNVQRQDASARLVEVVRQLQRIPELSRYDR 127

[Close]
BLAST of PI0004354 vs. NCBI nr
Match: TYK11924.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 116.3 bits (290), Expect = 1.6e-22
Identity = 65/99 (65.66%), Postives = 74/99 (74.75%), Query Frame = 0 

Query: 1   MENPTMYSQGLDMSPDDIMTPRSIRMSEARLGSSGAKRKRGGQALEAVAIIRSAMEYAND 60
           ME PTMYS+GLDMS   I   R    +E R G S +K+K+GGQ++E V IIR+ MEYAND
Sbjct: 30  MEIPTMYSKGLDMSTYYIKGTRFGHTAEDRAGLSESKKKKGGQSIETVEIIRNVMEYAND 89

Query: 61  QLKAIAEWPKEQRQDASVTRVEVVRQLQGISELSRLDRA 100
           QLKAIAEWP  Q QDAS TR E VRQLQGI ELSRLD+A
Sbjct: 90  QLKAIAEWPNVQCQDASTTRFEFVRQLQGILELSRLDKA 128

[Close]
BLAST of PI0004354 vs. NCBI nr
Match: TYK05082.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 110.5 bits (275), Expect = 8.6e-21
Identity = 58/99 (58.59%), Postives = 74/99 (74.75%), Query Frame = 0 

Query: 4   PTMYSQGLDMSPDDIMTPRSIRMSEARLGSSGAKRKRGGQALEAVAIIRSAMEYANDQLK 63
           P MYS GL+MSPDD+M  R+ R+SE R  SSG+KRKR G A ++  I+R+A+EY N+QL 
Sbjct: 173 PPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLH 232

Query: 64  AIAEWPKEQRQDASVTRVEVVRQLQGISELSRLDRAVVC 103
            IAEWP  QRQDAS TR E+VRQL+ I EL+ +DR  +C
Sbjct: 233 RIAEWPILQRQDASQTRQEIVRQLEAIPELTLMDRCRLC 271

[Close]
BLAST of PI0004354 vs. NCBI nr
Match: KAA0063726.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 108.2 bits (269), Expect = 4.3e-20
Identity = 58/95 (61.05%), Postives = 72/95 (75.79%), Query Frame = 0 

Query: 4   PTMYSQGLDMSPDDIMTPRSIRMSEARLGSSGAKRKRGGQALEAVAIIRSAMEYANDQLK 63
           P MYSQGL+MSPDD+M  R+ R+SE R  SSG+KRKR G A ++  I+R+A+EY N+QL 
Sbjct: 144 PPMYSQGLNMSPDDLMGTRTARVSERRNVSSGSKRKRAGHATDSGDIVRTAIEYRNEQLN 203

Query: 64  AIAEWPKEQRQDASVTRVEVVRQLQGISELSRLDR 99
            IAEWP  QRQ+AS TR EVVRQL+ I EL  +DR
Sbjct: 204 RIAEWPVLQRQNASQTRQEVVRQLEAIPELILMDR 238

[Close]
BLAST of PI0004354 vs. NCBI nr
Match: KAA0035629.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK30913.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 107.5 bits (267), Expect = 7.3e-20
Identity = 56/95 (58.95%), Postives = 73/95 (76.84%), Query Frame = 0 

Query: 4   PTMYSQGLDMSPDDIMTPRSIRMSEARLGSSGAKRKRGGQALEAVAIIRSAMEYANDQLK 63
           P+MYS GL+MSPDD+M  R+ R+SE R  SSG+KRKR G A ++  I+R+A+EY N+QL 
Sbjct: 170 PSMYSSGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLH 229

Query: 64  AIAEWPKEQRQDASVTRVEVVRQLQGISELSRLDR 99
            IAEWP  QRQDAS TR E+VRQL+ I +L+ +DR
Sbjct: 230 RIAEWPILQRQDASQTRQEIVRQLEAIPKLTLMDR 264

The following BLAST results are available for this feature:
BLAST of PI0004354 vs.
Match NameE-valueIdentityDescription
BLAST of PI0004354 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V4692.6e-2365.31Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CL797.6e-2365.66Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3C1M04.2e-2158.59Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VBC52.1e-2061.05Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3E4743.5e-2058.95Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of PI0004354 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0060529.15.4e-2365.31retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon p... [more]
TYK11924.11.6e-2265.66retrotransposon protein [Cucumis melo var. makuwa][more]
TYK05082.18.6e-2158.59retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0063726.14.3e-2061.05retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0035629.17.3e-2058.95retrotransposon protein [Cucumis melo var. makuwa] >TYK30913.1 retrotransposon p... [more]
BLAST of PI0004354 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0004354.1PI0004354.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane