PI0004350 (gene) Melon (PI 482460) v1

Overview


Name	PI0004350
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	DNA/RNA polymerases superfamily protein
Location	chr02: 10851995 .. 10852459 (+)
RNA-Seq Expression	PI0004350
Synteny	PI0004350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTTATAGGAAGCCATTACACCATGAGAAAGGGATGAAAGTGGCAATAGGTGTTCCGGCTACTAGGGACGCTAATAGAGCGTCAGAATCGAATGAAATGTCTAGTAATCCTCATAACGCCACTGAACAAAATGTGGAGGAAAGCATGTTTAATTGCTTTGCTCAGAGGGTAGAGGATCACTTTATGCCTACACACCCTACAGTAGACAAGAGGTTTAGCATCGAGAGATTGAAGGCATTGGGAGCAACGACTTTTGAAGAGACCACTTACCTAACCGACGCGGAGAAGCGGTTGAGCTTGATTAAAAAATGTTTTAGGGTGATGGAGTGCCCCAAAGAAAGGAAAGTGAAATTAGTAACATTTTTGTTGCAAGGAAGCACTGAAATTAGTGGACTCTCCATGCGACAAGCTCTATACGACGAGAACAGGCAGACTGAGTTTTGTTTCATGGGAAGAGTTTAG

mRNA sequence

ATGCGTTATAGGAAGCCATTACACCATGAGAAAGGGATGAAAGTGGCAATAGGTGTTCCGGCTACTAGGGACGCTAATAGAGCGTCAGAATCGAATGAAATGTCTAGTAATCCTCATAACGCCACTGAACAAAATGTGGAGGAAAGCATGTTTAATTGCTTTGCTCAGAGGGTAGAGGATCACTTTATGCCTACACACCCTACAGTAGACAAGAGGTTTAGCATCGAGAGATTGAAGGCATTGGGAGCAACGACTTTTGAAGAGACCACTTACCTAACCGACGCGGAGAAGCGGTTGAGCTTGATTAAAAAATGTTTTAGGGTGATGGAGTGCCCCAAAGAAAGGAAAGTGAAATTAGTAACATTTTTGTTGCAAGGAAGCACTGAAATTAGTGGACTCTCCATGCGACAAGCTCTATACGACGAGAACAGGCAGACTGAGTTTTGTTTCATGGGAAGAGTTTAG

Coding sequence (CDS)

ATGCGTTATAGGAAGCCATTACACCATGAGAAAGGGATGAAAGTGGCAATAGGTGTTCCGGCTACTAGGGACGCTAATAGAGCGTCAGAATCGAATGAAATGTCTAGTAATCCTCATAACGCCACTGAACAAAATGTGGAGGAAAGCATGTTTAATTGCTTTGCTCAGAGGGTAGAGGATCACTTTATGCCTACACACCCTACAGTAGACAAGAGGTTTAGCATCGAGAGATTGAAGGCATTGGGAGCAACGACTTTTGAAGAGACCACTTACCTAACCGACGCGGAGAAGCGGTTGAGCTTGATTAAAAAATGTTTTAGGGTGATGGAGTGCCCCAAAGAAAGGAAAGTGAAATTAGTAACATTTTTGTTGCAAGGAAGCACTGAAATTAGTGGACTCTCCATGCGACAAGCTCTATACGACGAGAACAGGCAGACTGAGTTTTGTTTCATGGGAAGAGTTTAG

Protein sequence

MRYRKPLHHEKGMKVAIGVPATRDANRASESNEMSSNPHNATEQNVEESMFNCFAQRVEDHFMPTHPTVDKRFSIERLKALGATTFEETTYLTDAEKRLSLIKKCFRVMECPKERKVKLVTFLLQGSTEISGLSMRQALYDENRQTEFCFMGRV

Homology

[Close]

BLAST of PI0004350 vs. ExPASy TrEMBL
Match: A0A5D3BUF6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00680 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 8.6e-31
Identity = 75/116 (64.66%), Postives = 92/116 (79.31%), Query Frame = 0


Query: 14  KVAIGVPATRDANRASESNEMSSNPHNATEQNVEESMFNCFAQRVEDHFMPTHPTVDKRF 73
           +V IGVPAT  AN+  ESNE+S+NP++  +QN E+SMF+ F QR+ DHFMPT   VDKRF
Sbjct: 12  QVTIGVPATESANKVQESNEISNNPYDPIKQNTEKSMFDRFGQRLVDHFMPTPFIVDKRF 71

Query: 74  SIERLKALGATTFEETTYLTDAEKRLSLIKKCFRVMECPKERKVKLVTFLLQGSTE 130
           +IERL+ALGATTFEET  L D +K L+LI+K F VME P+ERKVKL TFLLQGS +
Sbjct: 72  NIERLRALGATTFEETKNLADTKKWLNLIEKYFGVMEWPEERKVKLATFLLQGSVK 127

[Close]

BLAST of PI0004350 vs. ExPASy TrEMBL
Match: A0A5D3DVY7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold93G00280 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.0e-28
Identity = 72/127 (56.69%), Postives = 92/127 (72.44%), Query Frame = 0


Query: 13  MKVAIGVPATRDANRASESNEMSSNPHNATEQNVEESMFNCFAQRVEDHFMPTHPTVDKR 72
           M+VA+ V +   ANRA   +EMSSNPH+   QNVEESMFN FA+RV DH +P    V+KR
Sbjct: 1   MQVAMNVQSIGSANRAQGLDEMSSNPHSTIVQNVEESMFNRFAERVADHLIPIKSNVEKR 60

Query: 73  FSIERLKALGATTFEETTYLTDAEKRLSLIKKCFRVMECPKERKVKLVTFLLQGSTEISG 132
            +IER+KALGATTFE T   T+ +K LSL +KCF+VM+CPKERKVKL  F  + + +  G
Sbjct: 61  LTIERIKALGATTFEGTIGPTNVKKWLSLAEKCFQVMDCPKERKVKLAIFCYKATLKTDG 120

Query: 133 LSMRQAL 140
           LSM++ L
Sbjct: 121 LSMQRKL 127

[Close]

BLAST of PI0004350 vs. ExPASy TrEMBL
Match: A0A5A7UFQ1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1371G00020 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.8e-28
Identity = 72/127 (56.69%), Postives = 91/127 (71.65%), Query Frame = 0


Query: 13  MKVAIGVPATRDANRASESNEMSSNPHNATEQNVEESMFNCFAQRVEDHFMPTHPTVDKR 72
           M+VA+ V +   ANRA   +EMSSNPH+   QNVEESMFN FAQRV DH +P    V+KR
Sbjct: 1   MQVAMNVQSIGSANRAQGLDEMSSNPHSTIVQNVEESMFNRFAQRVADHLIPIKSNVEKR 60

Query: 73  FSIERLKALGATTFEETTYLTDAEKRLSLIKKCFRVMECPKERKVKLVTFLLQGSTEISG 132
            +IER+KALGAT FE T   T+ +K LSL +KCF+VM+CPKERKVKL  F  + + +  G
Sbjct: 61  LTIERIKALGATAFEGTIGPTNVKKWLSLAEKCFQVMDCPKERKVKLAIFCYKATLKADG 120

Query: 133 LSMRQAL 140
           LSM++ L
Sbjct: 121 LSMQRKL 127

[Close]

BLAST of PI0004350 vs. ExPASy TrEMBL
Match: A0A5A7TVM1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G00730 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 2.3e-28
Identity = 69/106 (65.09%), Postives = 82/106 (77.36%), Query Frame = 0


Query: 11  KGMKVAIGVPATRDANRASESNEMSSNPHNATEQNVEESMFNCFAQRVEDHFMPTHPTVD 70
           +G +VAI VP TR ANRA  S ++SSNPH++  QNVEESMF+ FAQR+ DHFMP   TVD
Sbjct: 29  RGRQVAISVPVTRKANRAQASGKISSNPHDSVRQNVEESMFDRFAQRLTDHFMPIPSTVD 88

Query: 71  KRFSIERLKALGATTFEETTYLTDAEKRLSLIKKCFRVMECPKERK 117
           KRF IERLKALGA TFE  T L DA K LSL++KCF VM+CPK+ +
Sbjct: 89  KRFGIERLKALGAMTFEGKTNLADANKCLSLVEKCFGVMKCPKKEE 134

[Close]

BLAST of PI0004350 vs. ExPASy TrEMBL
Match: A0A5D3DXF8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00110 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 2.3e-23
Identity = 70/123 (56.91%), Postives = 85/123 (69.11%), Query Frame = 0


Query: 17  IGVPATRDANRASESNEMSSNPHNATEQNVEESMFNCFAQRVEDHFMPTHPTVDKRFSIE 76
           +GV  T  ANR  ESN++SSNPH+   QN EE MF+ FAQR+ D FMPT  TVDKR  IE
Sbjct: 1   MGVFITTSANRVQESNDISSNPHDPVGQNAEERMFDRFAQRLVDCFMPTTSTVDKRLRIE 60

Query: 77  RLKALGATTFEETTYLTDAEKRLSLIKKCFRVMECPKERKVKLVTFLLQGSTEISGLSMR 136
            LKAL A TFE TT  TDA+K LSLI+   RVMECPK++KVKL  F  +   + +GL ++
Sbjct: 61  ILKALEAMTFEGTTNPTDAKKWLSLIENKIRVMECPKDKKVKL-AFCCKVVLKTNGLFIQ 120

Query: 137 QAL 140
           Q L
Sbjct: 121 QKL 122

[Close]

BLAST of PI0004350 vs. NCBI nr
Match: KAA0039561.1 (hypothetical protein E6C27_scaffold744G00310 [Cucumis melo var. makuwa] >TYK01739.1 hypothetical protein E5676_scaffold775G00680 [Cucumis melo var. makuwa])

HSP 1 Score: 143.3 bits (360), Expect = 1.8e-30
Identity = 75/116 (64.66%), Postives = 92/116 (79.31%), Query Frame = 0


Query: 14  KVAIGVPATRDANRASESNEMSSNPHNATEQNVEESMFNCFAQRVEDHFMPTHPTVDKRF 73
           +V IGVPAT  AN+  ESNE+S+NP++  +QN E+SMF+ F QR+ DHFMPT   VDKRF
Sbjct: 12  QVTIGVPATESANKVQESNEISNNPYDPIKQNTEKSMFDRFGQRLVDHFMPTPFIVDKRF 71

Query: 74  SIERLKALGATTFEETTYLTDAEKRLSLIKKCFRVMECPKERKVKLVTFLLQGSTE 130
           +IERL+ALGATTFEET  L D +K L+LI+K F VME P+ERKVKL TFLLQGS +
Sbjct: 72  NIERLRALGATTFEETKNLADTKKWLNLIEKYFGVMEWPEERKVKLATFLLQGSVK 127

[Close]

BLAST of PI0004350 vs. NCBI nr
Match: TYK27664.1 (uncharacterized protein E5676_scaffold93G00280 [Cucumis melo var. makuwa])

HSP 1 Score: 136.3 bits (342), Expect = 2.2e-28
Identity = 72/127 (56.69%), Postives = 92/127 (72.44%), Query Frame = 0


Query: 13  MKVAIGVPATRDANRASESNEMSSNPHNATEQNVEESMFNCFAQRVEDHFMPTHPTVDKR 72
           M+VA+ V +   ANRA   +EMSSNPH+   QNVEESMFN FA+RV DH +P    V+KR
Sbjct: 1   MQVAMNVQSIGSANRAQGLDEMSSNPHSTIVQNVEESMFNRFAERVADHLIPIKSNVEKR 60

Query: 73  FSIERLKALGATTFEETTYLTDAEKRLSLIKKCFRVMECPKERKVKLVTFLLQGSTEISG 132
            +IER+KALGATTFE T   T+ +K LSL +KCF+VM+CPKERKVKL  F  + + +  G
Sbjct: 61  LTIERIKALGATTFEGTIGPTNVKKWLSLAEKCFQVMDCPKERKVKLAIFCYKATLKTDG 120

Query: 133 LSMRQAL 140
           LSM++ L
Sbjct: 121 LSMQRKL 127

[Close]

BLAST of PI0004350 vs. NCBI nr
Match: KAA0054080.1 (hypothetical protein E6C27_scaffold1371G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 135.6 bits (340), Expect = 3.7e-28
Identity = 72/127 (56.69%), Postives = 91/127 (71.65%), Query Frame = 0


Query: 13  MKVAIGVPATRDANRASESNEMSSNPHNATEQNVEESMFNCFAQRVEDHFMPTHPTVDKR 72
           M+VA+ V +   ANRA   +EMSSNPH+   QNVEESMFN FAQRV DH +P    V+KR
Sbjct: 1   MQVAMNVQSIGSANRAQGLDEMSSNPHSTIVQNVEESMFNRFAQRVADHLIPIKSNVEKR 60

Query: 73  FSIERLKALGATTFEETTYLTDAEKRLSLIKKCFRVMECPKERKVKLVTFLLQGSTEISG 132
            +IER+KALGAT FE T   T+ +K LSL +KCF+VM+CPKERKVKL  F  + + +  G
Sbjct: 61  LTIERIKALGATAFEGTIGPTNVKKWLSLAEKCFQVMDCPKERKVKLAIFCYKATLKADG 120

Query: 133 LSMRQAL 140
           LSM++ L
Sbjct: 121 LSMQRKL 127

[Close]

BLAST of PI0004350 vs. NCBI nr
Match: KAA0047014.1 (hypothetical protein E6C27_scaffold230G002160 [Cucumis melo var. makuwa] >TYK04769.1 hypothetical protein E5676_scaffold68G00730 [Cucumis melo var. makuwa])

HSP 1 Score: 135.2 bits (339), Expect = 4.8e-28
Identity = 69/106 (65.09%), Postives = 82/106 (77.36%), Query Frame = 0


Query: 11  KGMKVAIGVPATRDANRASESNEMSSNPHNATEQNVEESMFNCFAQRVEDHFMPTHPTVD 70
           +G +VAI VP TR ANRA  S ++SSNPH++  QNVEESMF+ FAQR+ DHFMP   TVD
Sbjct: 29  RGRQVAISVPVTRKANRAQASGKISSNPHDSVRQNVEESMFDRFAQRLTDHFMPIPSTVD 88

Query: 71  KRFSIERLKALGATTFEETTYLTDAEKRLSLIKKCFRVMECPKERK 117
           KRF IERLKALGA TFE  T L DA K LSL++KCF VM+CPK+ +
Sbjct: 89  KRFGIERLKALGAMTFEGKTNLADANKCLSLVEKCFGVMKCPKKEE 134

[Close]

BLAST of PI0004350 vs. NCBI nr
Match: TYK28108.1 (hypothetical protein E5676_scaffold289G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 118.6 bits (296), Expect = 4.7e-23
Identity = 70/123 (56.91%), Postives = 85/123 (69.11%), Query Frame = 0


Query: 17  IGVPATRDANRASESNEMSSNPHNATEQNVEESMFNCFAQRVEDHFMPTHPTVDKRFSIE 76
           +GV  T  ANR  ESN++SSNPH+   QN EE MF+ FAQR+ D FMPT  TVDKR  IE
Sbjct: 1   MGVFITTSANRVQESNDISSNPHDPVGQNAEERMFDRFAQRLVDCFMPTTSTVDKRLRIE 60

Query: 77  RLKALGATTFEETTYLTDAEKRLSLIKKCFRVMECPKERKVKLVTFLLQGSTEISGLSMR 136
            LKAL A TFE TT  TDA+K LSLI+   RVMECPK++KVKL  F  +   + +GL ++
Sbjct: 61  ILKALEAMTFEGTTNPTDAKKWLSLIENKIRVMECPKDKKVKL-AFCCKVVLKTNGLFIQ 120

Query: 137 QAL 140
           Q L
Sbjct: 121 QKL 122

The following BLAST results are available for this feature:

BLAST of PI0004350 vs.


Match Name	E-value	Identity	Description

BLAST of PI0004350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BUF6	8.6e-31	64.66	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DVY7	1.0e-28	56.69	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UFQ1	1.8e-28	56.69	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TVM1	2.3e-28	65.09	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DXF8	2.3e-23	56.91	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0004350 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0039561.1	1.8e-30	64.66	hypothetical protein E6C27_scaffold744G00310 [Cucumis melo var. makuwa] >TYK0173...	[more]
TYK27664.1	2.2e-28	56.69	uncharacterized protein E5676_scaffold93G00280 [Cucumis melo var. makuwa]	[more]
KAA0054080.1	3.7e-28	56.69	hypothetical protein E6C27_scaffold1371G00020 [Cucumis melo var. makuwa]	[more]
KAA0047014.1	4.8e-28	65.09	hypothetical protein E6C27_scaffold230G002160 [Cucumis melo var. makuwa] >TYK047...	[more]
TYK28108.1	4.7e-23	56.91	hypothetical protein E5676_scaffold289G00110 [Cucumis melo var. makuwa]	[more]

BLAST of PI0004350 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0004350.1	PI0004350.1	mRNA