PI0004253 (gene) Melon (PI 482460) v1

Overview


Name	PI0004253
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	protein THYLAKOID ASSEMBLY 8, chloroplastic
Location	chr01: 27786782 .. 27787690 (-)
RNA-Seq Expression	PI0004253
Synteny	PI0004253

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATGAATGGGCCAAGCCCAAAGTTCCGATAATATTCGATTTTTCCCCCAAATCTCAGCAAGGGTATTACAGTCATTGCAAAAAAAAAAACCCAATCTCCACACCGCCATGGCCTCTTCTCTTCACTCCACATTTCTCAAATCCCAAATCTCAATTCCGATCCCCGTCTCCACCGCTGCTGCCGCGGTCGCCGTTTCCTTTCCGGTACGGTGCGGCCCACGGGACAACCGAGGACCGCTAGTGAAAGGCAGAACCCTAAGCATCGAAGCAATCCAAGCAATTCAAACCCTAAAACGGGCCGAGAGATCCGACCCGACGAAGCTCCAACAAGTCCTCTCCACTACGCTCTCCCGATTGCTCAAAGCCGACCTCGTCGCCGCCTTAAAGGAGCTCCTCCGGCAGGAACGGTGCGCCCTAGCCTTGGAGGTTTTCGCCGTAATCAGATCGGAGTACCGCGCCGAATTGGGGCTATACGCGGAGGTGGCGGCGGCGCTGTCAAGGAACGGTGCGGCGGAGGAAATCGACCGGCTGGTTTGCGATTTAGACGGTGGAGATGGGGTGATTGAGTGGGAGGATGATAAGGGTTTGGTTAAGTTGATTAAGGCGGTGATTAGTGGGGATAGAAGGGAATCGACGGTCAGGATTTATCGAATGATGAGGAGAAACGGGTGGGGATCGATCATTAAAGCTGATGATTATATGATTAGGGTTTTGAGTAAGGGTTTAAGGAGGCTTGGGGAAATAGAGTTGGCTGATGAGATAAATAGGGAATTTCAAGATTTAGTTGGCAGTTTTTGAAATTTTTGTAAAATGTTTAATTATAATGTATTATTACATTTATATTTCTATTTAGTTAATCTAATTTGCTAAAGTTTGATATATAACATAAAGTTTTTTTTTTGTGATGTGA

mRNA sequence

CATGAATGGGCCAAGCCCAAAGTTCCGATAATATTCGATTTTTCCCCCAAATCTCAGCAAGGGTATTACAGTCATTGCAAAAAAAAAAACCCAATCTCCACACCGCCATGGCCTCTTCTCTTCACTCCACATTTCTCAAATCCCAAATCTCAATTCCGATCCCCGTCTCCACCGCTGCTGCCGCGGTCGCCGTTTCCTTTCCGGTACGGTGCGGCCCACGGGACAACCGAGGACCGCTAGTGAAAGGCAGAACCCTAAGCATCGAAGCAATCCAAGCAATTCAAACCCTAAAACGGGCCGAGAGATCCGACCCGACGAAGCTCCAACAAGTCCTCTCCACTACGCTCTCCCGATTGCTCAAAGCCGACCTCGTCGCCGCCTTAAAGGAGCTCCTCCGGCAGGAACGGTGCGCCCTAGCCTTGGAGGTTTTCGCCGTAATCAGATCGGAGTACCGCGCCGAATTGGGGCTATACGCGGAGGTGGCGGCGGCGCTGTCAAGGAACGGTGCGGCGGAGGAAATCGACCGGCTGGTTTGCGATTTAGACGGTGGAGATGGGGTGATTGAGTGGGAGGATGATAAGGGTTTGGTTAAGTTGATTAAGGCGGTGATTAGTGGGGATAGAAGGGAATCGACGGTCAGGATTTATCGAATGATGAGGAGAAACGGGTGGGGATCGATCATTAAAGCTGATGATTATATGATTAGGGTTTTGAGTAAGGGTTTAAGGAGGCTTGGGGAAATAGAGTTGGCTGATGAGATAAATAGGGAATTTCAAGATTTAGTTGGCAGTTTTTGAAATTTTTGTAAAATGTTTAATTATAATGTATTATTACATTTATATTTCTATTTAGTTAATCTAATTTGCTAAAGTTTGATATATAACATAAAGTTTTTTTTTTGTGATGTGA

Coding sequence (CDS)

ATGGGCCAAGCCCAAAGTTCCGATAATATTCGATTTTTCCCCCAAATCTCAGCAAGGGTATTACAGTCATTGCAAAAAAAAAAACCCAATCTCCACACCGCCATGGCCTCTTCTCTTCACTCCACATTTCTCAAATCCCAAATCTCAATTCCGATCCCCGTCTCCACCGCTGCTGCCGCGGTCGCCGTTTCCTTTCCGGTACGGTGCGGCCCACGGGACAACCGAGGACCGCTAGTGAAAGGCAGAACCCTAAGCATCGAAGCAATCCAAGCAATTCAAACCCTAAAACGGGCCGAGAGATCCGACCCGACGAAGCTCCAACAAGTCCTCTCCACTACGCTCTCCCGATTGCTCAAAGCCGACCTCGTCGCCGCCTTAAAGGAGCTCCTCCGGCAGGAACGGTGCGCCCTAGCCTTGGAGGTTTTCGCCGTAATCAGATCGGAGTACCGCGCCGAATTGGGGCTATACGCGGAGGTGGCGGCGGCGCTGTCAAGGAACGGTGCGGCGGAGGAAATCGACCGGCTGGTTTGCGATTTAGACGGTGGAGATGGGGTGATTGAGTGGGAGGATGATAAGGGTTTGGTTAAGTTGATTAAGGCGGTGATTAGTGGGGATAGAAGGGAATCGACGGTCAGGATTTATCGAATGATGAGGAGAAACGGGTGGGGATCGATCATTAAAGCTGATGATTATATGATTAGGGTTTTGAGTAAGGGTTTAAGGAGGCTTGGGGAAATAGAGTTGGCTGATGAGATAAATAGGGAATTTCAAGATTTAGTTGGCAGTTTTTGA

Protein sequence

MGQAQSSDNIRFFPQISARVLQSLQKKKPNLHTAMASSLHSTFLKSQISIPIPVSTAAAAVAVSFPVRCGPRDNRGPLVKGRTLSIEAIQAIQTLKRAERSDPTKLQQVLSTTLSRLLKADLVAALKELLRQERCALALEVFAVIRSEYRAELGLYAEVAAALSRNGAAEEIDRLVCDLDGGDGVIEWEDDKGLVKLIKAVISGDRRESTVRIYRMMRRNGWGSIIKADDYMIRVLSKGLRRLGEIELADEINREFQDLVGSF

Homology

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BLAST of PI0004253 vs. ExPASy Swiss-Prot
Match: Q9LVW6 (Protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8 PE=2 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 5.0e-44
Identity = 102/192 (53.12%), Postives = 140/192 (72.92%), Query Frame = 0


Query: 67  VRCGPRDNRGPLVKGRTLSIEAIQAIQTLKRAERSDPTKLQQVLSTT---LSRLLKADLV 126
           +RCGPRDNRGPL+KGR LS EAIQ+IQ+LKRA R+  +     LS T   L RL+K+DL+
Sbjct: 31  IRCGPRDNRGPLLKGRILSTEAIQSIQSLKRAHRTGVS-----LSLTLRPLRRLIKSDLI 90

Query: 127 AALKELLRQERCALALEVFAVIRSEY-RAELGLYAEVAAALSRNGAAEEIDRLVCDLDGG 186
           + L+ELLRQ+ C LA+ V + +R+EY   +L LYA++  AL+RN   +EIDRL+ ++DG 
Sbjct: 91  SVLRELLRQDYCTLAVHVLSTLRTEYPPLDLVLYADIVNALTRNKEFDEIDRLIGEIDGI 150

Query: 187 DGVIEWEDDKGLVKLIKAVISGDRRESTVRIYRMMRRNGWGS-IIKADDYMIRVLSKGLR 246
           D   +  DDK L KLI+AV+  +RRES VR+Y +MR +GWGS   +AD+Y+  VLSKGL 
Sbjct: 151 D---QRSDDKALAKLIRAVVGAERRESVVRVYTLMRESGWGSESWEADEYVAEVLSKGLL 210

Query: 247 RLGEIELADEIN 254
           RLGE +LA +++
Sbjct: 211 RLGEPDLASQVS 214

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BLAST of PI0004253 vs. ExPASy Swiss-Prot
Match: Q9STF9 (Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8L PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.4e-06
Identity = 67/252 (26.59%), Postives = 122/252 (48.41%), Query Frame = 0


Query: 11  RFFPQISARVLQSLQKKKPNLHTAMASSLHSTFLKSQISIPIPVSTAAAAVAVSFPVRCG 70
           R FP  ++   Q++  + P++H    S+L    L      PIP       V+     R  
Sbjct: 9   RKFPTFASIFFQNI-TRNPSIHRISFSNLKPKTLLH----PIPPKPFTVFVS-----RFH 68

Query: 71  PRDNRGPLVKGRTL-SIEAIQAIQTLKRAERSDPTKLQQVLSTTLSRLLKADLVAALKEL 130
               RGPL +G+ L   EA+  I  LKR  + D  KL + + T + RLLK D++A + EL
Sbjct: 69  DGRPRGPLWRGKKLIGKEALFVILGLKRL-KEDDEKLDKFIKTHVFRLLKLDMLAVIGEL 128

Query: 131 LRQERCALALEVFAVIRSE--YRAELGLYAEVAAALSRNGAAEEIDRLVCDLDGGDGVIE 190
            RQE  ALA+++F VI+ +  Y+ ++ +Y ++  +L+++   +E   L   +   +    
Sbjct: 129 ERQEETALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKEN---L 188

Query: 191 WEDDKGLVKLIKAVISGDRRESTVRIYRMMRRNGWGSIIKADDYMIRVLSKGLRRLGEIE 250
           + D +   ++I+  +        + +Y  M +    S    ++   RVL KGL  L    
Sbjct: 189 FPDSQTYTEVIRGFLRDGCPADAMNVYEDMLK----SPDPPEELPFRVLLKGL--LPHPL 240

Query: 251 LADEINREFQDL 260
           L +++ ++F++L
Sbjct: 249 LRNKVKKDFEEL 240

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BLAST of PI0004253 vs. ExPASy Swiss-Prot
Match: Q1PFH7 (Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX=3702 GN=At1g62350 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.2e-05
Identity = 48/178 (26.97%), Postives = 90/178 (50.56%), Query Frame = 0


Query: 84  LSIEAIQAIQTLKRAERSDPTKLQQVLSTTLSRLLKADLVAALKELLRQERCALALEVFA 143
           +S E + A + LKR + +   +L + + + +SRLLK+DLV+ L E  RQ +  L ++++ 
Sbjct: 1   MSKEGLIAAKELKRLQ-TQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYE 60

Query: 144 VIRSE--YRAELGLYAEVAAALSRNGAAEEIDRLVCDLDGGDGVIEWEDDKGLVKLIKAV 203
           V+R E  YR ++  Y ++   L+RN   +E  ++  DL   + +    D      L++  
Sbjct: 61  VVRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLF---DQHTFGDLVRGF 120

Query: 204 ISGDRRESTVRIYRMMRRNGWGSIIKADDYMIRVLSKGLRRLGEIELADEINREFQDL 260
           +  +     +R+Y  MR     S  +      RV+ KGL  +   EL +++  +F +L
Sbjct: 121 LDNELPLEAMRLYGEMRE----SPDRPLSLPFRVILKGL--VPYPELREKVKDDFLEL 168

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BLAST of PI0004253 vs. ExPASy TrEMBL
Match: A0A1S3CGD3 (uncharacterized protein LOC103500597 OS=Cucumis melo OX=3656 GN=LOC103500597 PE=4 SV=1)

HSP 1 Score: 422.9 bits (1086), Expect = 9.6e-115
Identity = 226/252 (89.68%), Postives = 236/252 (93.65%), Query Frame = 0


Query: 12  FFPQISARVLQSLQKKKPNLHTAMASSLHSTFLKSQISIPIPVSTAAAAVAVSFPVRCGP 71
           F P +S       +KKKPNLHTAMASSLHSTFLKSQISIPIP STA AAVAVSF VRCGP
Sbjct: 5   FPPNLSKGYYSHCEKKKPNLHTAMASSLHSTFLKSQISIPIPTSTATAAVAVSFRVRCGP 64

Query: 72  RDNRGPLVKGRTLSIEAIQAIQTLKRAERSDPTKLQQVLSTTLSRLLKADLVAALKELLR 131
           RDNRGPLVKGRTLSIEAIQAIQ+LKRAERSDPTKLQQVLSTTLSRLLKADLVA LKELLR
Sbjct: 65  RDNRGPLVKGRTLSIEAIQAIQSLKRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLR 124

Query: 132 QERCALALEVFAVIRSEYRAELGLYAEVAAALSRNGAAEEIDRLVCDLDGGDGVIEW-ED 191
           QERCALALEVFAVIRSEYRAELGLYAEVAAALSRNGAAEEIDRLVCDLDG DGVIEW +D
Sbjct: 125 QERCALALEVFAVIRSEYRAELGLYAEVAAALSRNGAAEEIDRLVCDLDGRDGVIEWGDD 184

Query: 192 DKGLVKLIKAVISGDRRESTVRIYRMMRRNGWGSIIKADDYMIRVLSKGLRRLGEIELAD 251
           DKGL+KLIKAVISG+RRESTVRIYRMMRRNGWGS+IK DDYMI+V+SKGLRR+GEIELAD
Sbjct: 185 DKGLIKLIKAVISGNRRESTVRIYRMMRRNGWGSMIKGDDYMIKVMSKGLRRVGEIELAD 244

Query: 252 EINREFQDLVGS 263
           EINREFQDLVGS
Sbjct: 245 EINREFQDLVGS 256

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BLAST of PI0004253 vs. ExPASy TrEMBL
Match: A0A0A0K6N6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G447050 PE=4 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 3.3e-107
Identity = 213/230 (92.61%), Postives = 222/230 (96.52%), Query Frame = 0


Query: 35  MASSLHSTFLKSQISIPIPVSTAAAAVAVSFPVRCGPRDNRGPLVKGRTLSIEAIQAIQT 94
           MASSLHSTFLKSQISIPIP STA + VAVSF VRCGPRDNRGPLVKGRTLSIEAIQAIQ+
Sbjct: 1   MASSLHSTFLKSQISIPIPASTATSPVAVSFRVRCGPRDNRGPLVKGRTLSIEAIQAIQS 60

Query: 95  LKRAERSDPTKLQQVLSTTLSRLLKADLVAALKELLRQERCALALEVFAVIRSEYRAELG 154
           LKRAERSDPTKLQQVLSTTLSRLLKADLVA LKELLRQERCALALEVFAVI+SEYRAELG
Sbjct: 61  LKRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFAVIKSEYRAELG 120

Query: 155 LYAEVAAALSRNGAAEEIDRLVCDLDGGDGVIEW-EDDKGLVKLIKAVISGDRRESTVRI 214
           LYAEVAAALSRNGAAEEIDRLV DLDGGDGVIEW +DDKGL+KLIKAVISG+RRESTVRI
Sbjct: 121 LYAEVAAALSRNGAAEEIDRLVSDLDGGDGVIEWGDDDKGLIKLIKAVISGNRRESTVRI 180

Query: 215 YRMMRRNGWGSIIKADDYMIRVLSKGLRRLGEIELADEINREFQDLVGSF 264
           YRMMRR GWGS+IKADDYMI+VLSKGLRRLGEIELADEINREF+DLVGSF
Sbjct: 181 YRMMRRKGWGSMIKADDYMIKVLSKGLRRLGEIELADEINREFEDLVGSF 230

[Close]

BLAST of PI0004253 vs. ExPASy TrEMBL
Match: A0A5A7V0E2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G002110 PE=4 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 7.3e-107
Identity = 212/229 (92.58%), Postives = 221/229 (96.51%), Query Frame = 0


Query: 35  MASSLHSTFLKSQISIPIPVSTAAAAVAVSFPVRCGPRDNRGPLVKGRTLSIEAIQAIQT 94
           MASSL STFLKSQISIPIP STA AAVAVSF VRCGPRDNRGPLVKGRTLSIEAIQAIQ+
Sbjct: 1   MASSLRSTFLKSQISIPIPTSTATAAVAVSFRVRCGPRDNRGPLVKGRTLSIEAIQAIQS 60

Query: 95  LKRAERSDPTKLQQVLSTTLSRLLKADLVAALKELLRQERCALALEVFAVIRSEYRAELG 154
           LKRAERSDPTKLQQVLSTTLSRLLKADLVA LKELLRQERCALALEVFAVIRSEYRAELG
Sbjct: 61  LKRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFAVIRSEYRAELG 120

Query: 155 LYAEVAAALSRNGAAEEIDRLVCDLDGGDGVIEW-EDDKGLVKLIKAVISGDRRESTVRI 214
           LYAEVAAALSRNGAAEEIDRLVCDLDG DGVIEW +DDKGL+KLIKAVISG+RRESTVRI
Sbjct: 121 LYAEVAAALSRNGAAEEIDRLVCDLDGRDGVIEWGDDDKGLIKLIKAVISGNRRESTVRI 180

Query: 215 YRMMRRNGWGSIIKADDYMIRVLSKGLRRLGEIELADEINREFQDLVGS 263
           YRMMRRNGWGS+IK DDYMI+V+SKGLRR+GE+ELADEINREFQDLVGS
Sbjct: 181 YRMMRRNGWGSMIKGDDYMIKVMSKGLRRVGELELADEINREFQDLVGS 229

[Close]

BLAST of PI0004253 vs. ExPASy TrEMBL
Match: A0A6J1GQS0 (protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111456620 PE=4 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 1.3e-95
Identity = 192/229 (83.84%), Postives = 210/229 (91.70%), Query Frame = 0


Query: 35  MASSLHSTFLKSQISIPIPVSTAAAAVAVSFPVRCGPRDNRGPLVKGRTLSIEAIQAIQT 94
           MA SLHSTFLKSQI IPIP+S AAA V VS PVRCGPRDNRGPLVKGRTLS EAIQAIQ+
Sbjct: 1   MAFSLHSTFLKSQIPIPIPIS-AAATVVVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQS 60

Query: 95  LKRAERSDPTKLQQVLSTTLSRLLKADLVAALKELLRQERCALALEVFAVIRSEYRAELG 154
           LKRAE+SDPTKL+QVLSTTLSRLLKADLVA LKELLRQ+RCALALEVFAV+RSEY A+LG
Sbjct: 61  LKRAEKSDPTKLEQVLSTTLSRLLKADLVATLKELLRQDRCALALEVFAVVRSEYGADLG 120

Query: 155 LYAEVAAALSRNGAAEEIDRLVCDLDGGDGVIEWEDDKGLVKLIKAVISGDRRESTVRIY 214
           +YAEVAAALSRNGA EEIDRLVCDL+  D VI+  DDKGL+KLIKAVI GDRRESTVRIY
Sbjct: 121 MYAEVAAALSRNGAMEEIDRLVCDLEDEDRVIQC-DDKGLIKLIKAVIGGDRRESTVRIY 180

Query: 215 RMMRRNGWGSIIKADDYMIRVLSKGLRRLGEIELADEINREFQDLVGSF 264
           RMM+R+GWGS IKADDY +RVLSKGLRRLGE+E+ADE+N +FQDLVGSF
Sbjct: 181 RMMKRSGWGSTIKADDYTVRVLSKGLRRLGEMEMADEVNMQFQDLVGSF 227

[Close]

BLAST of PI0004253 vs. ExPASy TrEMBL
Match: A0A6J1JTE8 (protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111488709 PE=4 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 1.7e-95
Identity = 192/229 (83.84%), Postives = 209/229 (91.27%), Query Frame = 0


Query: 35  MASSLHSTFLKSQISIPIPVSTAAAAVAVSFPVRCGPRDNRGPLVKGRTLSIEAIQAIQT 94
           MA SLHSTFLKSQI IPIP+S A A V VS PVRCGPRDNRGPLVKGRTLS EAIQAIQ+
Sbjct: 1   MAFSLHSTFLKSQIPIPIPIS-ATATVVVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQS 60

Query: 95  LKRAERSDPTKLQQVLSTTLSRLLKADLVAALKELLRQERCALALEVFAVIRSEYRAELG 154
           LKRAE+SDPTKL+QVLSTTLSRLLKADLVA LKELLRQ+RCALALEVFAV+RSEY  +LG
Sbjct: 61  LKRAEKSDPTKLEQVLSTTLSRLLKADLVATLKELLRQDRCALALEVFAVVRSEYGVDLG 120

Query: 155 LYAEVAAALSRNGAAEEIDRLVCDLDGGDGVIEWEDDKGLVKLIKAVISGDRRESTVRIY 214
           +YAEVAAALSRNGA EEIDRLVCDL+  D VI+  DDKGL+KLIKAVI GDRRESTVRIY
Sbjct: 121 MYAEVAAALSRNGAMEEIDRLVCDLEDEDRVIQC-DDKGLIKLIKAVIGGDRRESTVRIY 180

Query: 215 RMMRRNGWGSIIKADDYMIRVLSKGLRRLGEIELADEINREFQDLVGSF 264
           RMM+R+GWGS IKADDYM+RVLSKGLRRLGE+E+ADEIN +FQDLVGSF
Sbjct: 181 RMMKRSGWGSTIKADDYMVRVLSKGLRRLGEMEMADEINMQFQDLVGSF 227

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BLAST of PI0004253 vs. NCBI nr
Match: XP_008462172.1 (PREDICTED: uncharacterized protein LOC103500597 [Cucumis melo])

HSP 1 Score: 422.9 bits (1086), Expect = 2.0e-114
Identity = 226/252 (89.68%), Postives = 236/252 (93.65%), Query Frame = 0


Query: 12  FFPQISARVLQSLQKKKPNLHTAMASSLHSTFLKSQISIPIPVSTAAAAVAVSFPVRCGP 71
           F P +S       +KKKPNLHTAMASSLHSTFLKSQISIPIP STA AAVAVSF VRCGP
Sbjct: 5   FPPNLSKGYYSHCEKKKPNLHTAMASSLHSTFLKSQISIPIPTSTATAAVAVSFRVRCGP 64

Query: 72  RDNRGPLVKGRTLSIEAIQAIQTLKRAERSDPTKLQQVLSTTLSRLLKADLVAALKELLR 131
           RDNRGPLVKGRTLSIEAIQAIQ+LKRAERSDPTKLQQVLSTTLSRLLKADLVA LKELLR
Sbjct: 65  RDNRGPLVKGRTLSIEAIQAIQSLKRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLR 124

Query: 132 QERCALALEVFAVIRSEYRAELGLYAEVAAALSRNGAAEEIDRLVCDLDGGDGVIEW-ED 191
           QERCALALEVFAVIRSEYRAELGLYAEVAAALSRNGAAEEIDRLVCDLDG DGVIEW +D
Sbjct: 125 QERCALALEVFAVIRSEYRAELGLYAEVAAALSRNGAAEEIDRLVCDLDGRDGVIEWGDD 184

Query: 192 DKGLVKLIKAVISGDRRESTVRIYRMMRRNGWGSIIKADDYMIRVLSKGLRRLGEIELAD 251
           DKGL+KLIKAVISG+RRESTVRIYRMMRRNGWGS+IK DDYMI+V+SKGLRR+GEIELAD
Sbjct: 185 DKGLIKLIKAVISGNRRESTVRIYRMMRRNGWGSMIKGDDYMIKVMSKGLRRVGEIELAD 244

Query: 252 EINREFQDLVGS 263
           EINREFQDLVGS
Sbjct: 245 EINREFQDLVGS 256

[Close]

BLAST of PI0004253 vs. NCBI nr
Match: XP_004141838.1 (protein THYLAKOID ASSEMBLY 8, chloroplastic [Cucumis sativus] >KGN45390.1 hypothetical protein Csa_016867 [Cucumis sativus])

HSP 1 Score: 397.9 bits (1021), Expect = 6.8e-107
Identity = 213/230 (92.61%), Postives = 222/230 (96.52%), Query Frame = 0


Query: 35  MASSLHSTFLKSQISIPIPVSTAAAAVAVSFPVRCGPRDNRGPLVKGRTLSIEAIQAIQT 94
           MASSLHSTFLKSQISIPIP STA + VAVSF VRCGPRDNRGPLVKGRTLSIEAIQAIQ+
Sbjct: 1   MASSLHSTFLKSQISIPIPASTATSPVAVSFRVRCGPRDNRGPLVKGRTLSIEAIQAIQS 60

Query: 95  LKRAERSDPTKLQQVLSTTLSRLLKADLVAALKELLRQERCALALEVFAVIRSEYRAELG 154
           LKRAERSDPTKLQQVLSTTLSRLLKADLVA LKELLRQERCALALEVFAVI+SEYRAELG
Sbjct: 61  LKRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFAVIKSEYRAELG 120

Query: 155 LYAEVAAALSRNGAAEEIDRLVCDLDGGDGVIEW-EDDKGLVKLIKAVISGDRRESTVRI 214
           LYAEVAAALSRNGAAEEIDRLV DLDGGDGVIEW +DDKGL+KLIKAVISG+RRESTVRI
Sbjct: 121 LYAEVAAALSRNGAAEEIDRLVSDLDGGDGVIEWGDDDKGLIKLIKAVISGNRRESTVRI 180

Query: 215 YRMMRRNGWGSIIKADDYMIRVLSKGLRRLGEIELADEINREFQDLVGSF 264
           YRMMRR GWGS+IKADDYMI+VLSKGLRRLGEIELADEINREF+DLVGSF
Sbjct: 181 YRMMRRKGWGSMIKADDYMIKVLSKGLRRLGEIELADEINREFEDLVGSF 230

[Close]

BLAST of PI0004253 vs. NCBI nr
Match: KAA0059315.1 (uncharacterized protein E6C27_scaffold242G00390 [Cucumis melo var. makuwa] >TYK04013.1 uncharacterized protein E5676_scaffold347G002110 [Cucumis melo var. makuwa])

HSP 1 Score: 396.7 bits (1018), Expect = 1.5e-106
Identity = 212/229 (92.58%), Postives = 221/229 (96.51%), Query Frame = 0


Query: 35  MASSLHSTFLKSQISIPIPVSTAAAAVAVSFPVRCGPRDNRGPLVKGRTLSIEAIQAIQT 94
           MASSL STFLKSQISIPIP STA AAVAVSF VRCGPRDNRGPLVKGRTLSIEAIQAIQ+
Sbjct: 1   MASSLRSTFLKSQISIPIPTSTATAAVAVSFRVRCGPRDNRGPLVKGRTLSIEAIQAIQS 60

Query: 95  LKRAERSDPTKLQQVLSTTLSRLLKADLVAALKELLRQERCALALEVFAVIRSEYRAELG 154
           LKRAERSDPTKLQQVLSTTLSRLLKADLVA LKELLRQERCALALEVFAVIRSEYRAELG
Sbjct: 61  LKRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFAVIRSEYRAELG 120

Query: 155 LYAEVAAALSRNGAAEEIDRLVCDLDGGDGVIEW-EDDKGLVKLIKAVISGDRRESTVRI 214
           LYAEVAAALSRNGAAEEIDRLVCDLDG DGVIEW +DDKGL+KLIKAVISG+RRESTVRI
Sbjct: 121 LYAEVAAALSRNGAAEEIDRLVCDLDGRDGVIEWGDDDKGLIKLIKAVISGNRRESTVRI 180

Query: 215 YRMMRRNGWGSIIKADDYMIRVLSKGLRRLGEIELADEINREFQDLVGS 263
           YRMMRRNGWGS+IK DDYMI+V+SKGLRR+GE+ELADEINREFQDLVGS
Sbjct: 181 YRMMRRNGWGSMIKGDDYMIKVMSKGLRRVGELELADEINREFQDLVGS 229

[Close]

BLAST of PI0004253 vs. NCBI nr
Match: XP_038898717.1 (protein THYLAKOID ASSEMBLY 8, chloroplastic [Benincasa hispida])

HSP 1 Score: 389.4 bits (999), Expect = 2.4e-104
Identity = 208/228 (91.23%), Postives = 221/228 (96.93%), Query Frame = 0


Query: 35  MASSLHSTFLKSQISIPIPVSTAAAAVAVSFPVRCGPRDNRGPLVKGRTLSIEAIQAIQT 94
           MASS+HSTFLKSQISIPIPVS AAAAVAVS PVRCGPRDNRGPLVKGRTLSIEAIQAIQ+
Sbjct: 1   MASSIHSTFLKSQISIPIPVS-AAAAVAVSLPVRCGPRDNRGPLVKGRTLSIEAIQAIQS 60

Query: 95  LKRAERSDPTKLQQVLSTTLSRLLKADLVAALKELLRQERCALALEVFAVIRSEYRAELG 154
           LKRAERSDPTKLQQVLSTTLSRLLKADLVA+LKELLRQ+RCALALEVFAVIRSEY A+LG
Sbjct: 61  LKRAERSDPTKLQQVLSTTLSRLLKADLVASLKELLRQDRCALALEVFAVIRSEYGADLG 120

Query: 155 LYAEVAAALSRNGAAEEIDRLVCDLDGGDGVIEWEDDKGLVKLIKAVISGDRRESTVRIY 214
           +YAEVAAALSRNGAAEEIDRLVCDLDGGD +I+W DDKGL+KLIKAVISGDRRESTVRIY
Sbjct: 121 MYAEVAAALSRNGAAEEIDRLVCDLDGGDVLIQW-DDKGLIKLIKAVISGDRRESTVRIY 180

Query: 215 RMMRRNGWGSIIKADDYMIRVLSKGLRRLGEIELADEINREFQDLVGS 263
           RMMRRNGWGS IKADDY++RVLSKGLRR GE+ELADEINREFQDLVG+
Sbjct: 181 RMMRRNGWGSTIKADDYLVRVLSKGLRRFGEMELADEINREFQDLVGN 226

[Close]

BLAST of PI0004253 vs. NCBI nr
Match: XP_022954347.1 (protein THYLAKOID ASSEMBLY 8, chloroplastic [Cucurbita moschata])

HSP 1 Score: 359.4 bits (921), Expect = 2.7e-95
Identity = 192/229 (83.84%), Postives = 210/229 (91.70%), Query Frame = 0


Query: 35  MASSLHSTFLKSQISIPIPVSTAAAAVAVSFPVRCGPRDNRGPLVKGRTLSIEAIQAIQT 94
           MA SLHSTFLKSQI IPIP+S AAA V VS PVRCGPRDNRGPLVKGRTLS EAIQAIQ+
Sbjct: 1   MAFSLHSTFLKSQIPIPIPIS-AAATVVVSLPVRCGPRDNRGPLVKGRTLSTEAIQAIQS 60

Query: 95  LKRAERSDPTKLQQVLSTTLSRLLKADLVAALKELLRQERCALALEVFAVIRSEYRAELG 154
           LKRAE+SDPTKL+QVLSTTLSRLLKADLVA LKELLRQ+RCALALEVFAV+RSEY A+LG
Sbjct: 61  LKRAEKSDPTKLEQVLSTTLSRLLKADLVATLKELLRQDRCALALEVFAVVRSEYGADLG 120

Query: 155 LYAEVAAALSRNGAAEEIDRLVCDLDGGDGVIEWEDDKGLVKLIKAVISGDRRESTVRIY 214
           +YAEVAAALSRNGA EEIDRLVCDL+  D VI+  DDKGL+KLIKAVI GDRRESTVRIY
Sbjct: 121 MYAEVAAALSRNGAMEEIDRLVCDLEDEDRVIQC-DDKGLIKLIKAVIGGDRRESTVRIY 180

Query: 215 RMMRRNGWGSIIKADDYMIRVLSKGLRRLGEIELADEINREFQDLVGSF 264
           RMM+R+GWGS IKADDY +RVLSKGLRRLGE+E+ADE+N +FQDLVGSF
Sbjct: 181 RMMKRSGWGSTIKADDYTVRVLSKGLRRLGEMEMADEVNMQFQDLVGSF 227

[Close]

BLAST of PI0004253 vs. TAIR 10
Match: AT3G27750.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: Vacuolar sorting protein 9 (VPS9) domain (TAIR:AT5G09320.1); Has 106 Blast hits to 106 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 179.5 bits (454), Expect = 3.5e-45
Identity = 102/192 (53.12%), Postives = 140/192 (72.92%), Query Frame = 0


Query: 67  VRCGPRDNRGPLVKGRTLSIEAIQAIQTLKRAERSDPTKLQQVLSTT---LSRLLKADLV 126
           +RCGPRDNRGPL+KGR LS EAIQ+IQ+LKRA R+  +     LS T   L RL+K+DL+
Sbjct: 31  IRCGPRDNRGPLLKGRILSTEAIQSIQSLKRAHRTGVS-----LSLTLRPLRRLIKSDLI 90

Query: 127 AALKELLRQERCALALEVFAVIRSEY-RAELGLYAEVAAALSRNGAAEEIDRLVCDLDGG 186
           + L+ELLRQ+ C LA+ V + +R+EY   +L LYA++  AL+RN   +EIDRL+ ++DG 
Sbjct: 91  SVLRELLRQDYCTLAVHVLSTLRTEYPPLDLVLYADIVNALTRNKEFDEIDRLIGEIDGI 150

Query: 187 DGVIEWEDDKGLVKLIKAVISGDRRESTVRIYRMMRRNGWGS-IIKADDYMIRVLSKGLR 246
           D   +  DDK L KLI+AV+  +RRES VR+Y +MR +GWGS   +AD+Y+  VLSKGL 
Sbjct: 151 D---QRSDDKALAKLIRAVVGAERRESVVRVYTLMRESGWGSESWEADEYVAEVLSKGLL 210

Query: 247 RLGEIELADEIN 254
           RLGE +LA +++
Sbjct: 211 RLGEPDLASQVS 214

[Close]

BLAST of PI0004253 vs. TAIR 10
Match: AT5G09320.1 (Vacuolar sorting protein 9 (VPS9) domain )

HSP 1 Score: 86.7 bits (213), Expect = 3.1e-17
Identity = 68/207 (32.85%), Postives = 105/207 (50.72%), Query Frame = 0


Query: 74  NRGPLVKGRTLSIEAIQAIQTLKRAE--------------RSDPTKLQQVLSTTLSRLLK 133
           NR PL +GR LSIEAIQA+Q LKRA                S    L +V+ +   RLLK
Sbjct: 495 NRKPLQRGRMLSIEAIQAVQALKRANPLLPPPPVPSTSTTSSSSALLDRVIISKFRRLLK 554

Query: 134 ADLVAALKELLRQERCALALEVFAVIRSE--YRAELGLYAEVAAALSRNGAAEEIDRLVC 193
            D+VA L+ELLRQ  C+LAL+VF  IR E  Y+ ++ +Y ++   ++ N   EE++ L  
Sbjct: 555 FDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTDMITVMADNSLMEEVNYLYS 614

Query: 194 DLDGGDGV---IEWEDDKGLVKLIKAVISGDRRESTVRIYRMMRRNGWGSIIKADDYMIR 253
            +    G+   IEW +      L+  +++    +  +  Y  M+  G+    + D    R
Sbjct: 615 AMKSEKGLMAEIEWFN-----TLLTILLNHKLFDLVMDCYAFMQSIGY----EPDRASFR 674

Query: 254 VLSKGLRRLGEIELADEINREFQDLVG 262
           VL  GL   GE+ L+  + ++  +  G
Sbjct: 675 VLVLGLESNGEMGLSAIVRQDAHEYYG 692

[Close]

BLAST of PI0004253 vs. TAIR 10
Match: AT3G46870.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 55.1 bits (131), Expect = 1.0e-07
Identity = 67/252 (26.59%), Postives = 122/252 (48.41%), Query Frame = 0


Query: 11  RFFPQISARVLQSLQKKKPNLHTAMASSLHSTFLKSQISIPIPVSTAAAAVAVSFPVRCG 70
           R FP  ++   Q++  + P++H    S+L    L      PIP       V+     R  
Sbjct: 9   RKFPTFASIFFQNI-TRNPSIHRISFSNLKPKTLLH----PIPPKPFTVFVS-----RFH 68

Query: 71  PRDNRGPLVKGRTL-SIEAIQAIQTLKRAERSDPTKLQQVLSTTLSRLLKADLVAALKEL 130
               RGPL +G+ L   EA+  I  LKR  + D  KL + + T + RLLK D++A + EL
Sbjct: 69  DGRPRGPLWRGKKLIGKEALFVILGLKRL-KEDDEKLDKFIKTHVFRLLKLDMLAVIGEL 128

Query: 131 LRQERCALALEVFAVIRSE--YRAELGLYAEVAAALSRNGAAEEIDRLVCDLDGGDGVIE 190
            RQE  ALA+++F VI+ +  Y+ ++ +Y ++  +L+++   +E   L   +   +    
Sbjct: 129 ERQEETALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKEN---L 188

Query: 191 WEDDKGLVKLIKAVISGDRRESTVRIYRMMRRNGWGSIIKADDYMIRVLSKGLRRLGEIE 250
           + D +   ++I+  +        + +Y  M +    S    ++   RVL KGL  L    
Sbjct: 189 FPDSQTYTEVIRGFLRDGCPADAMNVYEDMLK----SPDPPEELPFRVLLKGL--LPHPL 240

Query: 251 LADEINREFQDL 260
           L +++ ++F++L
Sbjct: 249 LRNKVKKDFEEL 240

[Close]

BLAST of PI0004253 vs. TAIR 10
Match: AT1G62350.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 52.0 bits (123), Expect = 8.5e-07
Identity = 48/178 (26.97%), Postives = 90/178 (50.56%), Query Frame = 0


Query: 84  LSIEAIQAIQTLKRAERSDPTKLQQVLSTTLSRLLKADLVAALKELLRQERCALALEVFA 143
           +S E + A + LKR + +   +L + + + +SRLLK+DLV+ L E  RQ +  L ++++ 
Sbjct: 1   MSKEGLIAAKELKRLQ-TQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYE 60

Query: 144 VIRSE--YRAELGLYAEVAAALSRNGAAEEIDRLVCDLDGGDGVIEWEDDKGLVKLIKAV 203
           V+R E  YR ++  Y ++   L+RN   +E  ++  DL   + +    D      L++  
Sbjct: 61  VVRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLF---DQHTFGDLVRGF 120

Query: 204 ISGDRRESTVRIYRMMRRNGWGSIIKADDYMIRVLSKGLRRLGEIELADEINREFQDL 260
           +  +     +R+Y  MR     S  +      RV+ KGL  +   EL +++  +F +L
Sbjct: 121 LDNELPLEAMRLYGEMRE----SPDRPLSLPFRVILKGL--VPYPELREKVKDDFLEL 168

The following BLAST results are available for this feature:

BLAST of PI0004253 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LVW6	5.0e-44	53.13	Protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=T...	[more]
Q9STF9	1.4e-06	26.59	Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
Q1PFH7	1.2e-05	26.97	Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX...	[more]

BLAST of PI0004253 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CGD3	9.6e-115	89.68	uncharacterized protein LOC103500597 OS=Cucumis melo OX=3656 GN=LOC103500597 PE=...	[more]
A0A0A0K6N6	3.3e-107	92.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G447050 PE=4 SV=1	[more]
A0A5A7V0E2	7.3e-107	92.58	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1GQS0	1.3e-95	83.84	protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1JTE8	1.7e-95	83.84	protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]

BLAST of PI0004253 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008462172.1	2.0e-114	89.68	PREDICTED: uncharacterized protein LOC103500597 [Cucumis melo]	[more]
XP_004141838.1	6.8e-107	92.61	protein THYLAKOID ASSEMBLY 8, chloroplastic [Cucumis sativus] >KGN45390.1 hypoth...	[more]
KAA0059315.1	1.5e-106	92.58	uncharacterized protein E6C27_scaffold242G00390 [Cucumis melo var. makuwa] >TYK0...	[more]
XP_038898717.1	2.4e-104	91.23	protein THYLAKOID ASSEMBLY 8, chloroplastic [Benincasa hispida]	[more]
XP_022954347.1	2.7e-95	83.84	protein THYLAKOID ASSEMBLY 8, chloroplastic [Cucurbita moschata]	[more]

BLAST of PI0004253 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27750.1	3.5e-45	53.13	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT5G09320.1	3.1e-17	32.85	Vacuolar sorting protein 9 (VPS9) domain	[more]
AT3G46870.1	1.0e-07	26.59	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G62350.1	8.5e-07	26.97	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 83..259 e-value: 1.1E-28 score: 102.1
None	No IPR available	PANTHER	PTHR47594:SF3	PROTEIN THYLAKOID ASSEMBLY 8, CHLOROPLASTIC	coord: 34..260
IPR044190	Protein THYLAKOID ASSEMBLY 8-like	PANTHER	PTHR47594	PPR CONTAINING PLANT-LIKE PROTEIN	coord: 34..260

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0004253.1	PI0004253.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0000373	Group II intron splicing
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003723	RNA binding