PI0004243 (gene) Melon (PI 482460) v1

Overview
NamePI0004243
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Locationchr11: 23010451 .. 23014964 (-)
RNA-Seq ExpressionPI0004243
SyntenyPI0004243
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGTAAAATTTTAGGAACTTAGAACTAAACACACACATCCTTGAAAATTTGTAGACTAAAAACGTAATTGTTCTATAACACTTTTTAATCTTGATTGTCTACACATTACAAAATCAACTTAATAAATGTAATTTTTGTTATTTGTTTAAAAAAAAAAAATTTTGTTCCCATCTTGTTTCCTTGTGAAATAAAACATTCTTTGGTAACGACCTATTTGATTCTTTGTTTCTTTGTGAAATAAAAAATTTGTAGACTAAAAAAGTTCACTATCATTTCCACAAACTTGTAGCATAACGACCTATAAACTTGTAACATAAGGATATATATATATAGACCATAATCTTCTATTTGGAAAGAAAAATCAAAATGTCAATGAATTTAAAGAGAAAATTTAAAAGGTGCATACTTGGAAAAAAAAAGAGTACAAACTAAATATGAAAAAACACATGTACGATTAGGAAAATAATCATCTTTGTTTAGAAAACACTATAAATTGTAACACTTTAGTCCCCATTTTATTTGTAAACATATACTCTCAAGTATTTTCCAATTCGTAGGTACTTTTAAACTACATTAAAAATATGATAATACTGTAGTCCCCATTTCATCCGTACTTTTAAACTACACTAAATCAATTTCCAAAAAAATTAACTTTAAATATATTGATTTTCACAATATGCTTTAAAAATTTACCAAAACATACACTAATGGGAGGTAACTTTTTTTCAATGTTAAAAATAACATAAGAGCGGTACGAGTTTAATGGTACCACATTTTCAAGTCATCAGTTGTCTTCAGTAAATGGATACACAAGAACTAGTTACGATACTCACAGTATTTACAACTTCCCAACGTCAGTTACTTGAGATAATAGAATTCTTACTGATTGATCGTAGGAGGATAGGACATACACCACATGATAGTAGACATCGTATTAGACAATTAGCATATTTTCATCTAATCCATGAGTCTGATCTTTGCTGTCGTCAAAGTACAATAATGGATAGAAGGTGTTTTGACATTTTATGCCATTTACTTAGGACGAGTGTTGGATTAGTCGGAACAGAAGTTATAGATGTGGAGGAGATGGTGGCAATGTTCCTACACATAGTAGCTCGTGACGTAAAAAATCGAATGATACAAAGGGGATTTGTCCGGTTCGATGAGACTGTTTCTAGACATTTCAACCTCGTCTTGTTAGCGATTTTACGGTTACACGACGAGTTGTTGAAAAAATCTCAACCAGTAACGAACTCCTGTACGGACCCGAAATGAAAATGGTTCGAGGTAAACATCGTTTGTCTGGACGATTGGTCGGACATGCGTACGAATAATTGTAATTTTTTTGTACCGCAGAATTGTCTTGGCACGTACATTAAGGTAAATGTTAGTGCAACCGATTGACCATGATATAGGACACGGAAGGGTGAAGTTGCAACAAATGTGTTGGGTGTTTGCGATACAAAAGGCGATTTCGTGTTTGTTTTAACTGGGTGGGAAGGATCAACAACTGATTTCTGAATTCTTCGAGATGCAATATCAAGAAATAACGGACTGAAGCTCTCGAAGGGTAAATATGTGGACGTATTATCGATTTCATATGTTTATATTTTGGAGTTGGGAATCGAAATAATTATGTCCTTAACAGGGTATTATTATCTATGTGATGCTGGATACCCAAATGTCGAGGGTTTCTTAGCCCTATATAAAGGAGAAAGATATCATCTTTTAGAGTGACGTAGAGGTAATGCACCAACAATGGTCCGAGAGTTCTTTAACATGAAACATTCTTCGGCACAGAATGTCATCGAAAGAGCTTTCGGGTTGTTGAAGAGTCGATGGGCTATTTTAAGAGGAAAGTCGTACTACCCAATCGAAGTCCAATGTCGAACTATCATGGCGTGTTGTCTCTACATAATCTTATCAACAGAGAGATGACTAACAATGAGATGAACGACGATTTGGATGAGGGTGATTCGACCCACGCTACAATGGAAGGTGACGATATTAGTTATATTGAGACCTCAAACGAATGGAGTTAATGGAAGGATCAATTGGCTAAGACGATGTACAGTGATTGGGAGTTACGTAACCAATAGTGCCTAATACTCTTTCAATTACTGGAGGGATAAATTTATGTTGTCCTGTTCTTATTGTGATGTTCCCTAAGTACATAATTTACATTGTGATGTTCTTATTGTAATGTTCCCTAAGCACATAATTTTCGTTGTCTATGTTTAATGTTGTTGAATACTAATATCGCTTTTTTCACTTTATTCAATTGTGTACATATGTACGTTAGAATAGCAAGTTTTTCAAGAGCACCCAAACACACATGGACTAAAGAGGAAGAAGCGAAGTTGGTTGAGTGTTTGGTGGAATTGGTTTCATCTGACGAGTGGAGGTCAGATAATGGGACATTTCGACCTGGATATTTAGCACAATTACAACGGATGATGGCGGAAAAGTTGCCCGACACTAACATCTAAGGATCACCGACTATTGATTGTCGTATGAAATCCCTTAAGAAAACTTATCAGGCAATTGCAGAAATGAGGGGGCCATCCTGTAGTGAGTTTGGGTAGAATGAAGAATACCAATGCATCATTGCAGAACGAGATTTGTTTGATAGTTGGGTCAAGGTACAATTTTCATAATGTGAATTTTAATTTATATACTTTCAAAATCACAACCATCAACTAATCTGTCTGTTTCATGTTTGTACAGAGTCATCCTGAGGCCAAAGGACTTTTACACAAATCATTTCCATATTATGACAATCTGTCGTATGTGTTCGGTAGAGATCGGGCAACAGGAGCACATGCGGAGACCTTTGCTGACGTGGGATCTAAATGCCAAACAGTTTTAATGAAGATGTTCCACTTGATGATCTACATGATGAAGACATCCCGACGATGTATAGCCAAAGAGTGAATATGTCCCCAGATGACATGGTGTTGGAATAAATGATATGTCTCATGAAAGGATGTGTCATTTCATGAGAATAACCAACAATGAGAAAATACATGGTATCTCTCATGAAGGTATCTCATGAAAGGTTGCTTCTCTTCATGAGAATAACCAATCATGAGAGCATGGCTATAAATAAATGCCCTATTCCATTTGAAAAAGATATAATGTAATATTGGTTTCCATAATCAATTTCTAAAAAATAAACATCTCTCTCTATCGTTGAGATTCGGTACTTCTTCAAGGTTTCGTTCGTTGATCTTCTGGACGTGGTGCTACTTCTAGAAGAAAGGTGATCTGTTCTATCCTGGGAGACAATTACTCTCGAAACTCTGGCACTAGGGTGAGTAAAATTGGCTTAAGGAGACAACGTGAATTCGTTGGGCTCAGATCTAGATTACATGTGATTTCCTGTTTGATATGATTATGTATCCAATAACACATGGTAGGAACATGTGGAGGTCGATCAAGTGAAGGACGAAATTGTTCAAGTGGGAGTAAGAGGAAACGGGGTGGCCAACATAATGAAACAGTGGAGGTGATCAGGAATGCAATGGACTTTGCAAGATCAATTGAAGGCAATTGTCGATTGGCCAAAAGAGAAGCGTGCAACAGAGGTCGAATTGTGAAGTCATGAAACAACTAGATGATCCCTGAACTACGGAGCTGAGATAGGATATCATATAAAAAGATTTTGTTACACGATCTTGAACAAAAATCTACACGTTTAGATTTGGCTACAACAAAATCTAACAAATATACAAAAATCTTTAAAAAAATTGTTGGATATTGGTACACGATCAAATCTAAAGTCAAATCTAGTCTAACAAATAATCTTGAAAAAATATTTAAAAAAATCATTGGATATTACATGTAGCCAAATCTAAAGTAAAATCTAGTCTAACAAATAATCTTGAAAAAAATAGTTTAGATTTGGGTTTTAAACAATTGTAATCATAAAAAACAAATTGTCTACCAAATTTAAACGATGATGGTGTAGCAAATCTAAACGTGGACCAAATATATTAGGTCCGGGGCCAGTTTTGGTATTTTGCGGCTTTGTTATTTTTTTTTTGAAAAAAACCTTTTTTTTTTCTAATTTATTTCAGAACAACATGTTTTGTTTTGTTTATGTTTTTTTTTTTTTGAACAGATGAACTAATCTCAGTTAACGCTTCACGCGATCTCGCCCTTTTCGTTTTCGCCTCACTCCCTTCTCCCACCTGCCGTCTCTGTTTCCCTTTCACCTCGCCGTCGCCGTCTCCCTCAGCTCGCCGTTACGGTCTACATCTCCATCTCAGATTGTCAGCTCTTCTCACACCATCTTCACACCTCAGTGTTTGGCCTACCTCCTTAGTCGAGGTGCTTCTTTATTTTTTCCTTAATGCAACAAATCTGATTCTAAATCATGTTTATTAGGTCAACAAATCTTATGTTCTTCTTTCAATGCGACACTTTGATTTTGCTTCATTTTTTGTATCTAAGTCTCTTCTGTCCAATCTGACCCTTGTGGATTGTATTTGGTTATGCGACAGGTTGA

mRNA sequence

ATGAAGAGTCATCCTGAGGCCAAAGGACTTTTACACAAATCATTTCCATATTATGACAATCTGTCGTATGTGTTCGGTAGAGATCGGGCAACAGGAGCACATGCGGAGACCTTTGCTGACGTGGGATCTAAATGCCAAACAGTTTTAATGAAGATGTTCCACTTGATGATCTACATGATGAAGACATCCCGACGATGTATAGCCAAAGAAAGAAAGGTGATCTGTTCTATCCTGGGAGACAATTACTCTCGAAACTCTGGCACTAGGGAACATGTGGAGGTCGATCAAGTGAAGGACGAAATTGTTCAAGTGGGAGTAAGAGGAAACGGGGTGGCCAACATAATGAAACAGTGGAGCTCGCCGTTACGGTCTACATCTCCATCTCAGATTGTCAGCTCTTCTCACACCATCTTCACACCTCAGTGTTTGGCCTACCTCCTTAGTCGAGGTTGA

Coding sequence (CDS)

ATGAAGAGTCATCCTGAGGCCAAAGGACTTTTACACAAATCATTTCCATATTATGACAATCTGTCGTATGTGTTCGGTAGAGATCGGGCAACAGGAGCACATGCGGAGACCTTTGCTGACGTGGGATCTAAATGCCAAACAGTTTTAATGAAGATGTTCCACTTGATGATCTACATGATGAAGACATCCCGACGATGTATAGCCAAAGAAAGAAAGGTGATCTGTTCTATCCTGGGAGACAATTACTCTCGAAACTCTGGCACTAGGGAACATGTGGAGGTCGATCAAGTGAAGGACGAAATTGTTCAAGTGGGAGTAAGAGGAAACGGGGTGGCCAACATAATGAAACAGTGGAGCTCGCCGTTACGGTCTACATCTCCATCTCAGATTGTCAGCTCTTCTCACACCATCTTCACACCTCAGTGTTTGGCCTACCTCCTTAGTCGAGGTTGA

Protein sequence

MKSHPEAKGLLHKSFPYYDNLSYVFGRDRATGAHAETFADVGSKCQTVLMKMFHLMIYMMKTSRRCIAKERKVICSILGDNYSRNSGTREHVEVDQVKDEIVQVGVRGNGVANIMKQWSSPLRSTSPSQIVSSSHTIFTPQCLAYLLSRG
Homology
[Close]
BLAST of PI0004243 vs. ExPASy TrEMBL
Match: A0A5D3DG22 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold523G00290 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 6.6e-12
Identity = 35/43 (81.40%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 1   MKSHPEAKGLLHKSFPYYDNLSYVFGRDRATGAHAETFADVGS 44
           +KSHP  KGLLHKSFPYYD+LSYVFG+DRATGA +ETF DVGS
Sbjct: 394 VKSHPATKGLLHKSFPYYDDLSYVFGKDRATGARSETFVDVGS 436

[Close]
BLAST of PI0004243 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.1e-11
Identity = 35/43 (81.40%), Postives = 40/43 (93.02%), Query Frame = 0 

Query: 1   MKSHPEAKGLLHKSFPYYDNLSYVFGRDRATGAHAETFADVGS 44
           +KSHP AKGLLHKSFPYYD+LSYVFG+DRATGA +ETF +VGS
Sbjct: 112 IKSHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGS 154

[Close]
BLAST of PI0004243 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.1e-11
Identity = 35/43 (81.40%), Postives = 40/43 (93.02%), Query Frame = 0 

Query: 1   MKSHPEAKGLLHKSFPYYDNLSYVFGRDRATGAHAETFADVGS 44
           +KSHP AKGLLHKSFPYYD+LSYVFG+DRATGA +ETF +VGS
Sbjct: 112 IKSHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGS 154

[Close]
BLAST of PI0004243 vs. ExPASy TrEMBL
Match: A0A5A7TK19 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G00210 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.5e-11
Identity = 43/70 (61.43%), Postives = 49/70 (70.00%), Query Frame = 0 

Query: 1   MKSHPEAKGLLHKSFPYYDNLSYVFGRDRATGAHAETFADVGSKCQTVLMKMFHLMIYMM 60
           ++SHP AKGLL+KSFPYYD L+YVFGRDRATG  AETFADVGS         F  M    
Sbjct: 85  VRSHPAAKGLLNKSFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFD-MGMET 144

Query: 61  KTSRRCIAKE 71
           +TSR C A+E
Sbjct: 145 RTSRPCTARE 153

[Close]
BLAST of PI0004243 vs. ExPASy TrEMBL
Match: A0A5D3BZU3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00280 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.9e-11
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 0 

Query: 2   KSHPEAKGLLHKSFPYYDNLSYVFGRDRATGAHAETFADVGS 44
           +SHP AKGLLHKSFPYYD+LSYVFG D ATGAH+ETFAD GS
Sbjct: 70  RSHPAAKGLLHKSFPYYDDLSYVFGNDGATGAHSETFADGGS 111

[Close]
BLAST of PI0004243 vs. NCBI nr
Match: KAA0062747.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22546.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 1.4e-11
Identity = 35/43 (81.40%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 1   MKSHPEAKGLLHKSFPYYDNLSYVFGRDRATGAHAETFADVGS 44
           +KSHP  KGLLHKSFPYYD+LSYVFG+DRATGA +ETF DVGS
Sbjct: 394 VKSHPATKGLLHKSFPYYDDLSYVFGKDRATGARSETFVDVGS 436

[Close]
BLAST of PI0004243 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 2.3e-11
Identity = 35/43 (81.40%), Postives = 40/43 (93.02%), Query Frame = 0 

Query: 1   MKSHPEAKGLLHKSFPYYDNLSYVFGRDRATGAHAETFADVGS 44
           +KSHP AKGLLHKSFPYYD+LSYVFG+DRATGA +ETF +VGS
Sbjct: 112 IKSHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGS 154

[Close]
BLAST of PI0004243 vs. NCBI nr
Match: KAA0043158.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 3.1e-11
Identity = 43/70 (61.43%), Postives = 49/70 (70.00%), Query Frame = 0 

Query: 1   MKSHPEAKGLLHKSFPYYDNLSYVFGRDRATGAHAETFADVGSKCQTVLMKMFHLMIYMM 60
           ++SHP AKGLL+KSFPYYD L+YVFGRDRATG  AETFADVGS         F  M    
Sbjct: 85  VRSHPAAKGLLNKSFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFD-MGMET 144

Query: 61  KTSRRCIAKE 71
           +TSR C A+E
Sbjct: 145 RTSRPCTARE 153

[Close]
BLAST of PI0004243 vs. NCBI nr
Match: KAA0031678.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 4.0e-11
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 0 

Query: 2   KSHPEAKGLLHKSFPYYDNLSYVFGRDRATGAHAETFADVGS 44
           +SHP AKGLLHKSFPYYD+LSYVFG D ATGAH+ETFAD GS
Sbjct: 70  RSHPAAKGLLHKSFPYYDDLSYVFGNDGATGAHSETFADGGS 111

[Close]
BLAST of PI0004243 vs. NCBI nr
Match: KAA0050293.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 5.2e-11
Identity = 35/43 (81.40%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 1   MKSHPEAKGLLHKSFPYYDNLSYVFGRDRATGAHAETFADVGS 44
           ++SHPEAKGLL+K FPYYD L+YVFGRDRATG  AETFADVGS
Sbjct: 112 VRSHPEAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGS 154

The following BLAST results are available for this feature:
BLAST of PI0004243 vs.
Match NameE-valueIdentityDescription
BLAST of PI0004243 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DG226.6e-1281.40Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U0H71.1e-1181.40Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3B4L31.1e-1181.40uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=... [more]
A0A5A7TK191.5e-1161.43Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BZU31.9e-1183.33Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of PI0004243 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0062747.11.4e-1181.40retrotransposon protein [Cucumis melo var. makuwa] >TYK22546.1 retrotransposon p... [more]
XP_008441954.12.3e-1181.40PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret... [more]
KAA0043158.13.1e-1161.43retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0031678.14.0e-1183.33retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon p... [more]
KAA0050293.15.2e-1181.40retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of PI0004243 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 1..92
NoneNo IPR availablePANTHERPTHR46250:SF3MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEINcoord: 1..92

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0004243.1PI0004243.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding