PI0004194 (gene) Melon (PI 482460) v1

Overview


Name	PI0004194
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	UBP-type domain-containing protein
Location	chr07: 505547 .. 508001 (+)
RNA-Seq Expression	PI0004194
Synteny	PI0004194

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTCTTTTTCTCTTTGAAATTTACTTCTCAAATTAGACGCTGCAGAGTCGAAGGTAGTCGTGAAATTCTGTGTGCTCATCAATGGCGGAAGAAGCCGGTTCATCCTCTTCCACTTCCAACCCACTGGTACTCTAATCAAACTTATTCCTTCAAGTTCTCTTTGATTGCCCCCAAAAATTCCCACTTCCTTCCTATATTTCTTTATCAATTTATTGAATCGCTGATCTTGGCTAATGTTGTTTTACGTCTTCTCTAGCCCCTCATAATCGAAGATGAAGTGGAGGAAGAACTCTTATACGGCGCCGGATCCGGATGGGTCCAAGCTCTAACTTCTTGCGATCATCTCGCTTCCTTATCTTCCGACCTCGCTCACATTCCGCCCCCTCATACTCCCTGTAGCCAGTCAGTTTTTCTTTTCCCTAAACTATGCCTTTAATTCTTATTTTGTTGTTCATCTTAATCTTCATTTCCATTTCTGCTGAAGGAAGATGTGCTAATTTGATGTTTTGATTCTTTGAGATATTGCTCCATCAATCGAATCCTAATTGTTTTGGCTGATAATTGGTTTAAACCCTATTTTAAAAGTTGAATTTTAATCCCTAAACTTTCAAGTTTGTCTCACTTTTAAAATGTCTACTTTGGTTTGTTAACTTTCAAAATATTATTTCTTTTGGTCCTCAAATATTTTGAATTTTTAGGGACGAAAATAGTTCTAACATAAAAATTTAAAGAAGGTTATAGGTACTAAAATGAGATTAAGTCTTGATAAATTTATCTTTGACAAACTAGAATGGTCGACTTGAGAGTTGAGCATCGTTTTTATGGTTAGATAATAGTAGTTGATGTCTTTTATTTTGTGTCGTGGGTTTGAATCTCCTTACCTCATTTGGTACTGTGTGAATGAAAAGTTGTCTTTTGTGGACTTCAGGCGTTTAGGAAGATTCTAAAATATGGTTATTGTCACCCTCTTCTCCTATGAGATTCTATATAGAACCCAGACATATTGAAATATAAATGGTAAGAATTTATAAGATTAATAAATAACAAGTACGTCACCTCCCTTCCTGAGATCTCTCTTAAGCTATAATTCACTCACCAAACTATTGTCTATCTTCCTCCTTTCCCTTCTATCTTTTTTTAATTTTTTTTTACATACCCATAAGAGTCAACCAGGACTAGCTTACGTCACTTTGATTAATCTTACGAGACAACCAACGTGCCCCTACAACAGTTAAGTGTCAATGAAACTTGTGGGGTGGTCGTCATGGATTGAACTCATAACCTATTAGCCCTTTATCAAAGTCATGTGGTATTTACTATTAGGCCAACTCACGATGATTATCTGAAAGATTCAGTCTTTTCAATTACGTTGACAGTAAAGATTTAAAATTAAGTTTTTTTATTGGAGGCTTTTAAGCTCAAGAACTCGAAGGATATATTTCAAGATCTCAAGTCTTTACCACTAAGGCTATCCTATGAAGTTAGTGTTCCATTGATATCATGCAAAAAAATTGAAGTTCTTTCATTTCAGCTAGACATCTTCTTTCGGTGGCTCTATATGAGTATAACGTTCGTAGATGTTTTAGCATCATAACAACCACATCAATGTTAGGTTCTTTTCTGTCAATTTGGTATGAATTGTAATTGGTGTATTATTGCGTCTAATTTTATTAGTGCTTTCAGATCGATTTTCGTGTTTTTGTTTGGTTTTAGTTTCATGATTTGGATAAACGCATTTCTATTTGGTTTATTAATCCATGGAACAATCTACATATGCAAGATGCCAGAATCCCACGGAGAACTGGCTGTGTTTATGCTGTAAGGATGTCTTTTGTAGTCGTTTTGTGAATAAGCACATGCTTCAACATTATGAGCAATCAACTCATTGCCTTGCACTCAGCTACAGGTGAATGTAAAATGGTTCTTTAGATTCTACTCTAATTTCTGCTTTCTATAGTCCTAATAAATTATGAACATAGGTTTGTGATGTTCATTAATAATTTGCATTTGGAAACAGTGATTTGTCAGTTTGGTGTTTCTCCTGCGACGCATATTTAGATGCACAAGTGATTCAGGAATTACGACCAGTACACGAAGTTGCCTACATACTGAAATTTGGCGAGGCCCCACCATTTCGATAGTATTAATTCATCCTGCACTGGGGGAACTGAAATATCTGATTATTAGTGTTATAACTTTTCTAGTATCTACATGTTAGATGTTTTGATTTCTTGGTTTGTACATTTCAAGCAAATGGCTTATGATCTTCACATGAATTGGGTTGGGTTGTCAAACGTTCATGGTAAGTTGGTTGTTCACTTTACAGAAGTGAGGGATAGATTAGAATCTCATATCTTGTTCAAGAAAATTATAAGAAGCTTTTACTTGAAACTGACAAACTTCTTGTCAAACCTTGATGATAACATTTATGAAATTGGTTCCCCATCTTTGTCA

mRNA sequence

GTTTCTTTTTCTCTTTGAAATTTACTTCTCAAATTAGACGCTGCAGAGTCGAAGGTAGTCGTGAAATTCTGTGTGCTCATCAATGGCGGAAGAAGCCGGTTCATCCTCTTCCACTTCCAACCCACTGCCCCTCATAATCGAAGATGAAGTGGAGGAAGAACTCTTATACGGCGCCGGATCCGGATGGGTCCAAGCTCTAACTTCTTGCGATCATCTCGCTTCCTTATCTTCCGACCTCGCTCACATTCCGCCCCCTCATACTCCCTGTAGCCAATGCCAGAATCCCACGGAGAACTGGCTGTGTTTATGCTGTAAGGATGTCTTTTGTAGTCGTTTTGTGAATAAGCACATGCTTCAACATTATGAGCAATCAACTCATTGCCTTGCACTCAGCTACAGTGATTTGTCAGTTTGGTGTTTCTCCTGCGACGCATATTTAGATGCACAAGTGATTCAGGAATTACGACCAGTACACGAAGTTGCCTACATACTGAAATTTGGCGAGGCCCCACCATTTCGATAGTATTAATTCATCCTGCACTGGGGGAACTGAAATATCTGATTATTAGTGTTATAACTTTTCTAGTATCTACATGTTAGATGTTTTGATTTCTTGGTTTGTACATTTCAAGCAAATGGCTTATGATCTTCACATGAATTGGGTTGGGTTGTCAAACGTTCATGGTAAGTTGGTTGTTCACTTTACAGAAGTGAGGGATAGATTAGAATCTCATATCTTGTTCAAGAAAATTATAAGAAGCTTTTACTTGAAACTGACAAACTTCTTGTCAAACCTTGATGATAACATTTATGAAATTGGTTCCCCATCTTTGTCA

Coding sequence (CDS)

ATGGCGGAAGAAGCCGGTTCATCCTCTTCCACTTCCAACCCACTGCCCCTCATAATCGAAGATGAAGTGGAGGAAGAACTCTTATACGGCGCCGGATCCGGATGGGTCCAAGCTCTAACTTCTTGCGATCATCTCGCTTCCTTATCTTCCGACCTCGCTCACATTCCGCCCCCTCATACTCCCTGTAGCCAATGCCAGAATCCCACGGAGAACTGGCTGTGTTTATGCTGTAAGGATGTCTTTTGTAGTCGTTTTGTGAATAAGCACATGCTTCAACATTATGAGCAATCAACTCATTGCCTTGCACTCAGCTACAGTGATTTGTCAGTTTGGTGTTTCTCCTGCGACGCATATTTAGATGCACAAGTGATTCAGGAATTACGACCAGTACACGAAGTTGCCTACATACTGAAATTTGGCGAGGCCCCACCATTTCGATAG

Protein sequence

MAEEAGSSSSTSNPLPLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPHTPCSQCQNPTENWLCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPPFR

Homology

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BLAST of PI0004194 vs. ExPASy Swiss-Prot
Match: Q9UBN7 (Histone deacetylase 6 OS=Homo sapiens OX=9606 GN=HDAC6 PE=1 SV=2)

HSP 1 Score: 92.0 bits (227), Expect = 5.8e-18
Identity = 46/109 (42.20%), Postives = 59/109 (54.13%), Query Frame = 0


Query: 36   VQALTSCDHLASLSSDLAHIPPPHTPCSQCQNPTENWLCLCCKDVFCSRFVNKHMLQHYE 95
            V  L  C HL ++    A       PC  C    ENW+CL C  V+C R++N HMLQH+ 
Sbjct: 1107 VTPLPWCPHLVAVCPIPAAGLDVTQPCGDCGTIQENWVCLSCYQVYCGRYINGHMLQHHG 1166

Query: 96   QSTHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPP 145
             S H L LSY DLS WC+ C AY+  Q + +   V  +A+  KFGE  P
Sbjct: 1167 NSGHPLVLSYIDLSAWCYYCQAYVHHQALLD---VKNIAHQNKFGEDMP 1212

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BLAST of PI0004194 vs. ExPASy Swiss-Prot
Match: Q9Z2V5 (Histone deacetylase 6 OS=Mus musculus OX=10090 GN=Hdac6 PE=1 SV=3)

HSP 1 Score: 90.5 bits (223), Expect = 1.7e-17
Identity = 53/144 (36.81%), Postives = 71/144 (49.31%), Query Frame = 0


Query: 1    MAEEAGSSSSTSNPLPLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPHT 60
            + E AG     S  L     D   +++ Y      V  L+ C HL ++    A       
Sbjct: 1011 LGEAAGGQDMNSLMLTQGFGDFNTQDVFYA-----VTPLSWCPHLMAVCPIPAAGLDVSQ 1070

Query: 61   PCSQCQNPTENWLCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLD 120
            PC  C    ENW+CL C  V+CSR+VN HM+ H+E S H L LS  DLS WC+ C AY+ 
Sbjct: 1071 PCKTCGTVQENWVCLTCYQVYCSRYVNAHMVCHHEASEHPLVLSCVDLSTWCYVCQAYVH 1130

Query: 121  AQVIQELRPVHEVAYILKFGEAPP 145
                ++L+ V   A+  KFGE  P
Sbjct: 1131 H---EDLQDVKNAAHQNKFGEDMP 1146

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BLAST of PI0004194 vs. ExPASy Swiss-Prot
Match: Q20296 (Histone deacetylase 6 OS=Caenorhabditis elegans OX=6239 GN=hda-6 PE=3 SV=2)

HSP 1 Score: 88.2 bits (217), Expect = 8.4e-17
Identity = 52/147 (35.37%), Postives = 75/147 (51.02%), Query Frame = 0


Query: 2   AEEAGSSSSTSNPLPLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPP---- 61
           +  +GSSSS++ P   +       E++    +  V  L +C HL     ++  +PP    
Sbjct: 822 SSSSGSSSSSTRPSHNL-------EIMDSGPAHAVVPLATCPHL----KEVKPLPPAKIN 881

Query: 62  PHTPCSQCQNPTENWLCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDA 121
             T CS+CQ   E W CL C    C RFVN+H + H+  S+H +ALS +DLSVWC+ CD+
Sbjct: 882 ARTACSECQIGAEVWTCLTCYKYNCGRFVNEHAMMHHLSSSHPMALSMADLSVWCYPCDS 941

Query: 122 YLDAQVIQELRPVHEVAYILKFGEAPP 145
           Y+       L      A+  KFGE  P
Sbjct: 942 YVHNPA---LIGAKSAAHESKFGETMP 954

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BLAST of PI0004194 vs. ExPASy Swiss-Prot
Match: Q54QE6 (NAD-dependent deacetylase sir2A OS=Dictyostelium discoideum OX=44689 GN=sir2A PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 8.1e-12
Identity = 27/60 (45.00%), Postives = 40/60 (66.67%), Query Frame = 0


Query: 60  TPCSQCQNPTENWLCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYL 119
           T C  C + +ENW+C+ C  V CSR VN H  +H+E + H ++ S+SD S WC++CD Y+
Sbjct: 32  TKCHACNDESENWICMTCGVVSCSRHVNGHAGEHFENTKHPISASFSDHSFWCYTCDTYV 91

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BLAST of PI0004194 vs. ExPASy Swiss-Prot
Match: Q9H0E7 (Ubiquitin carboxyl-terminal hydrolase 44 OS=Homo sapiens OX=9606 GN=USP44 PE=1 SV=2)

HSP 1 Score: 67.4 bits (163), Expect = 1.5e-10
Identity = 27/84 (32.14%), Postives = 48/84 (57.14%), Query Frame = 0


Query: 38  ALTSCDHLA--SLSSDLAHIPPPHTPCSQCQNPTENWLCLCCKDVFCSRFVNKHMLQHYE 97
           A+ +C H+    L+ D + + P    C  C      W CL C  V C R++ +H L+H++
Sbjct: 3   AMDTCKHVGQLQLAQDHSSLNPQKWHCVDCNTTESIWACLSCSHVACGRYIEEHALKHFQ 62

Query: 98  QSTHCLALSYSDLSVWCFSCDAYL 120
           +S+H +AL  +++ V+C+ CD Y+
Sbjct: 63  ESSHPVALEVNEMYVFCYLCDDYV 86

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BLAST of PI0004194 vs. ExPASy TrEMBL
Match: A0A0A0KT14 (UBP-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G000940 PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 1.4e-78
Identity = 141/146 (96.58%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 1   MAEEAGSSSSTSNPLPLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPHT 60
           MAE+AGSSSSTSNPL LIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP T
Sbjct: 1   MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQT 60

Query: 61  PCSQCQNPTENWLCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLD 120
           PCSQCQNP ENW+CLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLD
Sbjct: 61  PCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLD 120

Query: 121 AQVIQELRPVHEVAYILKFGEAPPFR 147
           AQVIQELRPVHEVAYILKFGEAPPFR
Sbjct: 121 AQVIQELRPVHEVAYILKFGEAPPFR 146

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BLAST of PI0004194 vs. ExPASy TrEMBL
Match: A0A1S3BZ94 (histone deacetylase 6 OS=Cucumis melo OX=3656 GN=LOC103494801 PE=4 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 6.8e-78
Identity = 143/148 (96.62%), Postives = 143/148 (96.62%), Query Frame = 0


Query: 1   MAEEAGSSSSTSNPLPLI--IEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60
           MAEEAGSSSSTSN LPLI  IEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP
Sbjct: 1   MAEEAGSSSSTSNQLPLIIEIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60

Query: 61  HTPCSQCQNPTENWLCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAY 120
            TPCSQCQNP ENWLCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAY
Sbjct: 61  QTPCSQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAY 120

Query: 121 LDAQVIQELRPVHEVAYILKFGEAPPFR 147
           LDAQVIQELRPVHEVAYILKFGEAPPFR
Sbjct: 121 LDAQVIQELRPVHEVAYILKFGEAPPFR 148

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BLAST of PI0004194 vs. ExPASy TrEMBL
Match: A0A5A7TNA2 (Histone deacetylase 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00740 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 2.0e-77
Identity = 142/148 (95.95%), Postives = 142/148 (95.95%), Query Frame = 0


Query: 1   MAEEAGSSSSTSNPLPLI--IEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60
           MAEEAGSSSSTSN LPLI  IEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP
Sbjct: 1   MAEEAGSSSSTSNQLPLIIEIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60

Query: 61  HTPCSQCQNPTENWLCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAY 120
            TPCSQCQNP ENWLCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAY
Sbjct: 61  QTPCSQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAY 120

Query: 121 LDAQVIQELRPVHEVAYILKFGEAPPFR 147
           LDAQVIQELRPVHEVAYILKFGE PPFR
Sbjct: 121 LDAQVIQELRPVHEVAYILKFGEVPPFR 148

[Close]

BLAST of PI0004194 vs. ExPASy TrEMBL
Match: A0A6J1D695 (histone deacetylase 6 OS=Momordica charantia OX=3673 GN=LOC111017700 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.2e-63
Identity = 121/146 (82.88%), Postives = 131/146 (89.73%), Query Frame = 0


Query: 1   MAEEAGSSSSTSNPLPLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPHT 60
           MA EAGSSS  SN  P IIE+E EE+ L+GA +GWV+ALT CDHLASLSSDLAHIP P T
Sbjct: 1   MANEAGSSS--SNLPPCIIEEEGEEQ-LFGAEAGWVEALTYCDHLASLSSDLAHIPTPDT 60

Query: 61  PCSQCQNPTENWLCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLD 120
            CS+CQNP ENWLCLCCK++ CSRFVNKHMLQHY+QSTHCLALSYSDLSVWCFSCDAYLD
Sbjct: 61  ACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCFSCDAYLD 120

Query: 121 AQVIQELRPVHEVAYILKFGEAPPFR 147
           AQVIQELRPV+EVAYILKFGEAPPFR
Sbjct: 121 AQVIQELRPVYEVAYILKFGEAPPFR 143

[Close]

BLAST of PI0004194 vs. ExPASy TrEMBL
Match: A0A061E839 (Regulator of Vps4 activity in the MVB pathway protein OS=Theobroma cacao OX=3641 GN=TCM_007207 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 4.4e-61
Identity = 109/146 (74.66%), Postives = 131/146 (89.73%), Query Frame = 0


Query: 1   MAEEAGSSSSTSNPLPLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPHT 60
           MA++AG+SSS    L +I+E+E + +L+YGA SGWV+A T CDHLASLSSDLAHIP P+T
Sbjct: 1   MADQAGASSS---HLKIILEEEDDYDLIYGAESGWVEARTQCDHLASLSSDLAHIPTPNT 60

Query: 61  PCSQCQNPTENWLCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLD 120
           PC++CQ+P+ENWLCLCCKDV CSRFVNKHML+HY+Q+THC+ALSYSDLSVWCF+CD YLD
Sbjct: 61  PCNRCQHPSENWLCLCCKDVLCSRFVNKHMLEHYKQTTHCIALSYSDLSVWCFACDTYLD 120

Query: 121 AQVIQELRPVHEVAYILKFGEAPPFR 147
           AQVI++LRPVHE AYILKFGEAPP R
Sbjct: 121 AQVIRQLRPVHETAYILKFGEAPPHR 143

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BLAST of PI0004194 vs. NCBI nr
Match: XP_004152271.1 (histone deacetylase 6 [Cucumis sativus] >KGN52775.1 hypothetical protein Csa_015084 [Cucumis sativus])

HSP 1 Score: 302.0 bits (772), Expect = 2.8e-78
Identity = 141/146 (96.58%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 1   MAEEAGSSSSTSNPLPLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPHT 60
           MAE+AGSSSSTSNPL LIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP T
Sbjct: 1   MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQT 60

Query: 61  PCSQCQNPTENWLCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLD 120
           PCSQCQNP ENW+CLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLD
Sbjct: 61  PCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLD 120

Query: 121 AQVIQELRPVHEVAYILKFGEAPPFR 147
           AQVIQELRPVHEVAYILKFGEAPPFR
Sbjct: 121 AQVIQELRPVHEVAYILKFGEAPPFR 146

[Close]

BLAST of PI0004194 vs. NCBI nr
Match: XP_008454385.1 (PREDICTED: histone deacetylase 6 [Cucumis melo])

HSP 1 Score: 299.7 bits (766), Expect = 1.4e-77
Identity = 143/148 (96.62%), Postives = 143/148 (96.62%), Query Frame = 0


Query: 1   MAEEAGSSSSTSNPLPLI--IEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60
           MAEEAGSSSSTSN LPLI  IEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP
Sbjct: 1   MAEEAGSSSSTSNQLPLIIEIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60

Query: 61  HTPCSQCQNPTENWLCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAY 120
            TPCSQCQNP ENWLCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAY
Sbjct: 61  QTPCSQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAY 120

Query: 121 LDAQVIQELRPVHEVAYILKFGEAPPFR 147
           LDAQVIQELRPVHEVAYILKFGEAPPFR
Sbjct: 121 LDAQVIQELRPVHEVAYILKFGEAPPFR 148

[Close]

BLAST of PI0004194 vs. NCBI nr
Match: KAA0044348.1 (histone deacetylase 6 [Cucumis melo var. makuwa])

HSP 1 Score: 298.1 bits (762), Expect = 4.1e-77
Identity = 142/148 (95.95%), Postives = 142/148 (95.95%), Query Frame = 0


Query: 1   MAEEAGSSSSTSNPLPLI--IEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60
           MAEEAGSSSSTSN LPLI  IEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP
Sbjct: 1   MAEEAGSSSSTSNQLPLIIEIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60

Query: 61  HTPCSQCQNPTENWLCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAY 120
            TPCSQCQNP ENWLCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAY
Sbjct: 61  QTPCSQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAY 120

Query: 121 LDAQVIQELRPVHEVAYILKFGEAPPFR 147
           LDAQVIQELRPVHEVAYILKFGE PPFR
Sbjct: 121 LDAQVIQELRPVHEVAYILKFGEVPPFR 148

[Close]

BLAST of PI0004194 vs. NCBI nr
Match: XP_038904979.1 (histone deacetylase 6 [Benincasa hispida])

HSP 1 Score: 276.9 bits (707), Expect = 9.7e-71
Identity = 131/146 (89.73%), Postives = 136/146 (93.15%), Query Frame = 0


Query: 1   MAEEAGSSSSTSNPLPLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPHT 60
           MA+EAGSSS  SNPLPLI+E+EVEEELLYGA SGWV+ALTSCDHLA LS DLAHIPPP  
Sbjct: 1   MAKEAGSSS--SNPLPLILEEEVEEELLYGAESGWVEALTSCDHLALLSPDLAHIPPPDI 60

Query: 61  PCSQCQNPTENWLCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLD 120
           PCS+CQNP ENWLCL CKDVFCSRFVNKHMLQHYEQ THCLALSYSDLSVWCFSCDAYLD
Sbjct: 61  PCSECQNPKENWLCLSCKDVFCSRFVNKHMLQHYEQVTHCLALSYSDLSVWCFSCDAYLD 120

Query: 121 AQVIQELRPVHEVAYILKFGEAPPFR 147
           AQVIQELRPVHEVAYILKFGEAPPFR
Sbjct: 121 AQVIQELRPVHEVAYILKFGEAPPFR 144

[Close]

BLAST of PI0004194 vs. NCBI nr
Match: KAG6600290.1 (Histone deacetylase 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 261.5 bits (667), Expect = 4.2e-66
Identity = 122/146 (83.56%), Postives = 130/146 (89.04%), Query Frame = 0


Query: 1   MAEEAGSSSSTSNPLPLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPHT 60
           MA EAGSSS  SNP P +IE+EV EE LYGA SGWV+ALTSCDHL SL SDLAHIPPP T
Sbjct: 1   MANEAGSSS--SNPAPCVIEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDT 60

Query: 61  PCSQCQNPTENWLCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLD 120
            C +C+NP ENWLCLCCK+VFCSRFVNKHMLQHY+QS H LALSYSDLSVWCFSCDAYLD
Sbjct: 61  ACCECENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLD 120

Query: 121 AQVIQELRPVHEVAYILKFGEAPPFR 147
           AQ+IQELRPVHEVAYILKFGEAPPFR
Sbjct: 121 AQLIQELRPVHEVAYILKFGEAPPFR 144

[Close]

BLAST of PI0004194 vs. TAIR 10
Match: AT2G14830.2 (Regulator of Vps4 activity in the MVB pathway protein )

HSP 1 Score: 221.9 bits (564), Expect = 3.5e-58
Identity = 100/144 (69.44%), Postives = 122/144 (84.72%), Query Frame = 0


Query: 1   MAEEAGSSSSTSNPLPLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPHT 60
           MAE+A SSSS+S+P P  + DE ++ +L GAGSGWV+A  +CDHL +LS DL H+P P T
Sbjct: 1   MAEKAPSSSSSSSP-PKEVADETQDWIL-GAGSGWVEARKTCDHLNTLSPDLLHLPTPDT 60

Query: 61  PCSQCQNPTENWLCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLD 120
           PCS+CQNP ENWLCLCCK+V CSRFVN+HML H++Q+ HCLALSYSDLSVWCF C+AYLD
Sbjct: 61  PCSRCQNPVENWLCLCCKEVLCSRFVNRHMLMHHQQTGHCLALSYSDLSVWCFCCEAYLD 120

Query: 121 AQVIQELRPVHEVAYILKFGEAPP 145
           AQ+I +LRP+H+ AYILKFGEAPP
Sbjct: 121 AQIILQLRPIHQAAYILKFGEAPP 142

[Close]

BLAST of PI0004194 vs. TAIR 10
Match: AT2G14830.1 (Regulator of Vps4 activity in the MVB pathway protein )

HSP 1 Score: 72.8 bits (177), Expect = 2.6e-13
Identity = 40/76 (52.63%), Postives = 54/76 (71.05%), Query Frame = 0


Query: 1  MAEEAGSSSSTSNPLPLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPHT 60
          MAE+A SSSS+S+P P  + DE ++ +L GAGSGWV+A  +CDHL +LS DL H+P P T
Sbjct: 1  MAEKAPSSSSSSSP-PKEVADETQDWIL-GAGSGWVEARKTCDHLNTLSPDLLHLPTPDT 60

Query: 61 PCSQCQNPTENWLCLC 77
          PCS+ +  TE+    C
Sbjct: 61 PCSRYKR-TEHDTMFC 73

[Close]

BLAST of PI0004194 vs. TAIR 10
Match: AT2G26000.1 (zinc finger (C3HC4-type RING finger) family protein )

HSP 1 Score: 50.8 bits (120), Expect = 1.1e-06
Identity = 20/63 (31.75%), Postives = 33/63 (52.38%), Query Frame = 0


Query: 57  PPHTPCSQCQNPTENWLCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCD 116
           P ++ C  CQ     W+C+ C  V C R+   H  +H+E++ HC +L      VW ++ D
Sbjct: 213 PENSVCCVCQTTENLWMCVICGVVGCGRYKEGHARRHWEETEHCYSLELETQRVWDYAGD 272

Query: 117 AYL 120
            Y+
Sbjct: 273 NYV 275

[Close]

BLAST of PI0004194 vs. TAIR 10
Match: AT2G26000.2 (zinc finger (C3HC4-type RING finger) family protein )

HSP 1 Score: 50.8 bits (120), Expect = 1.1e-06
Identity = 20/63 (31.75%), Postives = 33/63 (52.38%), Query Frame = 0


Query: 57  PPHTPCSQCQNPTENWLCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCD 116
           P ++ C  CQ     W+C+ C  V C R+   H  +H+E++ HC +L      VW ++ D
Sbjct: 213 PENSVCCVCQTTENLWMCVICGVVGCGRYKEGHARRHWEETEHCYSLELETQRVWDYAGD 272

Query: 117 AYL 120
            Y+
Sbjct: 273 NYV 275

The following BLAST results are available for this feature:

BLAST of PI0004194 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9UBN7	5.8e-18	42.20	Histone deacetylase 6 OS=Homo sapiens OX=9606 GN=HDAC6 PE=1 SV=2	[more]
Q9Z2V5	1.7e-17	36.81	Histone deacetylase 6 OS=Mus musculus OX=10090 GN=Hdac6 PE=1 SV=3	[more]
Q20296	8.4e-17	35.37	Histone deacetylase 6 OS=Caenorhabditis elegans OX=6239 GN=hda-6 PE=3 SV=2	[more]
Q54QE6	8.1e-12	45.00	NAD-dependent deacetylase sir2A OS=Dictyostelium discoideum OX=44689 GN=sir2A PE...	[more]
Q9H0E7	1.5e-10	32.14	Ubiquitin carboxyl-terminal hydrolase 44 OS=Homo sapiens OX=9606 GN=USP44 PE=1 S...	[more]

BLAST of PI0004194 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KT14	1.4e-78	96.58	UBP-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G000940 PE...	[more]
A0A1S3BZ94	6.8e-78	96.62	histone deacetylase 6 OS=Cucumis melo OX=3656 GN=LOC103494801 PE=4 SV=1	[more]
A0A5A7TNA2	2.0e-77	95.95	Histone deacetylase 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46...	[more]
A0A6J1D695	1.2e-63	82.88	histone deacetylase 6 OS=Momordica charantia OX=3673 GN=LOC111017700 PE=4 SV=1	[more]
A0A061E839	4.4e-61	74.66	Regulator of Vps4 activity in the MVB pathway protein OS=Theobroma cacao OX=3641...	[more]

BLAST of PI0004194 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152271.1	2.8e-78	96.58	histone deacetylase 6 [Cucumis sativus] >KGN52775.1 hypothetical protein Csa_015...	[more]
XP_008454385.1	1.4e-77	96.62	PREDICTED: histone deacetylase 6 [Cucumis melo]	[more]
KAA0044348.1	4.1e-77	95.95	histone deacetylase 6 [Cucumis melo var. makuwa]	[more]
XP_038904979.1	9.7e-71	89.73	histone deacetylase 6 [Benincasa hispida]	[more]
KAG6600290.1	4.2e-66	83.56	Histone deacetylase 6, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of PI0004194 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G14830.2	3.5e-58	69.44	Regulator of Vps4 activity in the MVB pathway protein	[more]
AT2G14830.1	2.6e-13	52.63	Regulator of Vps4 activity in the MVB pathway protein	[more]
AT2G26000.1	1.1e-06	31.75	zinc finger (C3HC4-type RING finger) family protein	[more]
AT2G26000.2	1.1e-06	31.75	zinc finger (C3HC4-type RING finger) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001607	Zinc finger, UBP-type	SMART	SM00290	Zf_UBP_1	coord: 61..110 e-value: 2.6E-9 score: 47.0
IPR001607	Zinc finger, UBP-type	PFAM	PF02148	zf-UBP	coord: 62..120 e-value: 6.5E-18 score: 64.8
IPR001607	Zinc finger, UBP-type	PROSITE	PS50271	ZF_UBP	coord: 60..121 score: 17.365543
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 36..143 e-value: 2.0E-29 score: 103.5
None	No IPR available	PANTHER	PTHR47665	HISTONE DEACETYLASE-LIKE PROTEIN	coord: 1..146
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 40..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0004194.1	PI0004194.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009958	positive gravitropism
biological_process	GO:0016567	protein ubiquitination
molecular_function	GO:0008270	zinc ion binding